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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0213200 |
| Transcript ID | LotjaGi6g1v0213200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT5G58130.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q3UHX0|NOL8_MOUSE Nucleolar protein 8; TrEMBL-Plants: tr|A2Q361|A2Q361_MEDTR RNA recognition motif; Found in the gene: LotjaGi6g1v0213200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51124579..51127747) extracted from Lotus japonicus Gifu genome v1.2.
TTCAAACGGCGTCGTTGAGCCCTGGTTCTAAACCCTAAATTATTACATTTGCCTGGGTAACAGAGAGTGAGGTTCAGTAG CCATGGAGGAAGAGGAACAAGAGCAAAGTGCAGTGAGAATCTTCGTCGGAGGATTGGGTGAAGCCGTCACCGGCGATGAT CTCCAGCGGCTATTCGCTTCTCTCGGCACCGTCCAATCAATCGACACAATCCGAACCAAAGGCCGCAGCTTCGCCTACCT CGACTTCATCCCCTCCCCCACCGATCCCAAATCGCTCACCAAGCTCTTCAGCAAGTACAATGGCTGCGCATGGAAGGGTG GAAGGCTCAGACTCGAGAAAGCCAAAGAGAATTACCTTGCACGGTTGAAGAAAGAATGGGAAGAAGAAGCTCTGGTTAAC AGTATCCAATCACCATCTGATGATGATGATGTTCCTGCTCAGAATAATGAATTGGAGGAAAACCCGAATGCGAGACGCGC TTCGAATATTCCAGACACGAAGCAGCTCAGGGTTTTCTTTCCCAGATTGAGAAAGGTCACTTTTTGAATATGACATAGCT AGCTTTATTTATTTATTTTTCATATTTTGTGCTAATGCATCTCAATTTGTGTGGTTATTACTCTTATTGTTAGTTTAGTT TCTGTTAGTCTGCTAGAGTTAAGTTATTGGACTGTAATTCATGTCACATGGTTGTGGAAATTAGTACATAGCCCTAGGAT TAAGATAATGTCTTATCTTGATTATGATCTATTGAGGAATCAGTACTATGGTTTTGCAAATCCTATTAGCTTTCGAGGCT GTCCACTGTGATTTTGGTTTGACTCTGGTTTTCACCGTGTATCGAAACAAGCACGGCGTTGGACATAAACAATTGTGAGA TTTCATAACTGTATTTCACATTACCCTATAAAAATCACATTTCTCATAAAAGTATCCAAACATAAATTAATTCACCTTTA CTATAGGCAATTTTACCAAAAACTGCCTCGTAGTTTTACGGATAAAAATGTTGTTTTATTAGTTATTTGAAGATGCATTT TCAATACTGTTGTATATCACTATGTATAAATATATTAGTGCTAAATCACATCTCAATATTTACGTGCTGCGTTTATATTA GTGCAGGTGAAATCTATACCATTCAGTGGATCTGGCAAGCACAAATATAGTTTCCAGAATATTAAAGTTCCTCCGATGCC CGTGCATTTTTGTGATTGTGAGGAACATTGTAGTCCTTTTGTCAAAGAAAGAGGAAAAGTGCCTTCTCATGGGACAGCAG AAATTGGTGGAATAAATGATGAAGAAATTAACATAATGAATGCTGTGATGAACAAGCTATTTGAAAAAGAAAAGGTTTCC AACACCAAGGATCTTGAAAAGGGGCAGGATTCCTTTAAATCACCTGATGCTTTACCTTTAAATGAATGTGAAGTAGATAG TGCAACCGATGATGATGATGACGGTCTCATTATTAATATTGAGACTAAGAAAAGTAAAGCAGCTTTATCTGGGAGCCATG AACTTGAAAGGATCATGGAAAATCCGGTTAGTTTTTTCTCTTTTTTTTGGGGGGGGGATTTCAATAAAAATCAGATTGGT ATAGTTTGTCTAAGTGGTAGTATCAGTTTCCTATAAGAATTGATAATCTATTTTATACAATTGTTGCTTTGGATCTTCAG GAATCATGGTCGAACAAAACAAGAATTGCCAAGGAAGAACCGAAGGAGAGTATGCTTCAAGTGCAGAAAAGGAGTGATGA CAGTCAGAACAAGGTCAAGAAGCGAAAACCACTTCCTGAATTGGAGAGCGAAAGCAATGGGTGTGTCTCTACAACCCCTG GTAGCAAAAGTAATACGAAGACCCTTCCAGATGAGCTGGGATCTGGTGCACATCCTGCAAAAGTTTCATGGATTCAGAAG TCTTCATGGAAAGAACTTCTTGGTCAAGGAGGCAGCGCTGCTTTCAGTGCCTCTCTCATACTGCCGAAGCCCGATTCTGG TATAGATCAACAAAGAACTGATGATCCTTCGACACCCTCATCTGCAAGCGACGAAACTGAAAATAGTGAAAGCGATGATG AATACCCAGGGAGCGAACCTACCAATACACAAGTGATACAAGAGTCCGCTGAACCACAACCTACCAATAAACGAGTGATA AAGGAGCTTGCTAAAGCTCAGCCTACCGATAAAGGAGTGATAAATGAGCCTGCTGAAGTCCAGCCTATCAATAAAGGAGT GATGAATGAGCCTACTGAAGCCCATCCTACCCATAAACAAGTGACAAATGAGCTTGCTGAAACTCAGCATAATGTGGCAC CTAATAACACGGGTAGAGGTGCTTCGTGGCTGCGAAAGCAATCCTGGACACAACTGGTTAGTCCAAGTAATAATTCCTTC AGCATTTCGCAAATTTTGCCTGACATTACTTTCCCAGAGCCAATATTCAAGGAGCCTGTTGTGGATCCTGCCAATTCCGA TGATTGCAAGCATGGTGGTGTAAATATGGATACTACTAATGAAGCTTTCAACGGGGAGATTATACCAGAGAAGAGTCAGC ATACTGATGCCAGTGATACTGCTGCTCCAGTAGTGGAGCAAAAAACTGAAACAAGTCCAGGAGACGACGACACGTCCACT GCTGATATTGAAATAGGCGAAACTTGCTCATTTATGAGGAGTGCTGCTTCTTTGAAAGAGTGGGCAAAAGCTAAGGCTGC ACTTAGTGGATCACTCAAGCGAAAGCGTGGTGAGAAGTAAAGGCATTGAGCTGCATGATCTCATGGGTTTGAGCAGTATT ATGATTTATATACACTGTTGTTTTTTCAGTTCAATCAAGTGAAAATGCAAGGTAAAGAAAGGCAAATCCGTTTTCAGATA CTGTGAAAACAGGAAGACTATGTATGCACTTTGCAAAAGATTTATTCATACTTTTTTCTTTACACACTTGCAATGTTGTA TCTTTGTTGTTTTATTAACCAAAAACGAAGGAATTGGATTCTCTCAAGCAGGAATCCTCAGCAATCTGCATCTAGAAGAA CATATCCATTAGTCCTATCTCTATTTTAATTTGACGAAGTTATCTTGAAGTTCAAGTCTAAGATATTGATATCGTGACCA TTTTCTTTTTTTTGAGATGGTCAAATCATTTAATTTTTTTAGCTGTGAC
CDS sequence (LotjaGi6g1v0213200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGAGGAACAAGAGCAAAGTGCAGTGAGAATCTTCGTCGGAGGATTGGGTGAAGCCGTCACCGGCGATGATCT CCAGCGGCTATTCGCTTCTCTCGGCACCGTCCAATCAATCGACACAATCCGAACCAAAGGCCGCAGCTTCGCCTACCTCG ACTTCATCCCCTCCCCCACCGATCCCAAATCGCTCACCAAGCTCTTCAGCAAGTACAATGGCTGCGCATGGAAGGGTGGA AGGCTCAGACTCGAGAAAGCCAAAGAGAATTACCTTGCACGGTTGAAGAAAGAATGGGAAGAAGAAGCTCTGGTTAACAG TATCCAATCACCATCTGATGATGATGATGTTCCTGCTCAGAATAATGAATTGGAGGAAAACCCGAATGCGAGACGCGCTT CGAATATTCCAGACACGAAGCAGCTCAGGGTTTTCTTTCCCAGATTGAGAAAGGTGAAATCTATACCATTCAGTGGATCT GGCAAGCACAAATATAGTTTCCAGAATATTAAAGTTCCTCCGATGCCCGTGCATTTTTGTGATTGTGAGGAACATTGTAG TCCTTTTGTCAAAGAAAGAGGAAAAGTGCCTTCTCATGGGACAGCAGAAATTGGTGGAATAAATGATGAAGAAATTAACA TAATGAATGCTGTGATGAACAAGCTATTTGAAAAAGAAAAGGTTTCCAACACCAAGGATCTTGAAAAGGGGCAGGATTCC TTTAAATCACCTGATGCTTTACCTTTAAATGAATGTGAAGTAGATAGTGCAACCGATGATGATGATGACGGTCTCATTAT TAATATTGAGACTAAGAAAAGTAAAGCAGCTTTATCTGGGAGCCATGAACTTGAAAGGATCATGGAAAATCCGGAATCAT GGTCGAACAAAACAAGAATTGCCAAGGAAGAACCGAAGGAGAGTATGCTTCAAGTGCAGAAAAGGAGTGATGACAGTCAG AACAAGGTCAAGAAGCGAAAACCACTTCCTGAATTGGAGAGCGAAAGCAATGGGTGTGTCTCTACAACCCCTGGTAGCAA AAGTAATACGAAGACCCTTCCAGATGAGCTGGGATCTGGTGCACATCCTGCAAAAGTTTCATGGATTCAGAAGTCTTCAT GGAAAGAACTTCTTGGTCAAGGAGGCAGCGCTGCTTTCAGTGCCTCTCTCATACTGCCGAAGCCCGATTCTGGTATAGAT CAACAAAGAACTGATGATCCTTCGACACCCTCATCTGCAAGCGACGAAACTGAAAATAGTGAAAGCGATGATGAATACCC AGGGAGCGAACCTACCAATACACAAGTGATACAAGAGTCCGCTGAACCACAACCTACCAATAAACGAGTGATAAAGGAGC TTGCTAAAGCTCAGCCTACCGATAAAGGAGTGATAAATGAGCCTGCTGAAGTCCAGCCTATCAATAAAGGAGTGATGAAT GAGCCTACTGAAGCCCATCCTACCCATAAACAAGTGACAAATGAGCTTGCTGAAACTCAGCATAATGTGGCACCTAATAA CACGGGTAGAGGTGCTTCGTGGCTGCGAAAGCAATCCTGGACACAACTGGTTAGTCCAAGTAATAATTCCTTCAGCATTT CGCAAATTTTGCCTGACATTACTTTCCCAGAGCCAATATTCAAGGAGCCTGTTGTGGATCCTGCCAATTCCGATGATTGC AAGCATGGTGGTGTAAATATGGATACTACTAATGAAGCTTTCAACGGGGAGATTATACCAGAGAAGAGTCAGCATACTGA TGCCAGTGATACTGCTGCTCCAGTAGTGGAGCAAAAAACTGAAACAAGTCCAGGAGACGACGACACGTCCACTGCTGATA TTGAAATAGGCGAAACTTGCTCATTTATGAGGAGTGCTGCTTCTTTGAAAGAGTGGGCAAAAGCTAAGGCTGCACTTAGT GGATCACTCAAGCGAAAGCGTGGTGAGAAGTAA
Protein sequence (LotjaGi6g1v0213200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEEQEQSAVRIFVGGLGEAVTGDDLQRLFASLGTVQSIDTIRTKGRSFAYLDFIPSPTDPKSLTKLFSKYNGCAWKGG RLRLEKAKENYLARLKKEWEEEALVNSIQSPSDDDDVPAQNNELEENPNARRASNIPDTKQLRVFFPRLRKVKSIPFSGS GKHKYSFQNIKVPPMPVHFCDCEEHCSPFVKERGKVPSHGTAEIGGINDEEINIMNAVMNKLFEKEKVSNTKDLEKGQDS FKSPDALPLNECEVDSATDDDDDGLIINIETKKSKAALSGSHELERIMENPESWSNKTRIAKEEPKESMLQVQKRSDDSQ NKVKKRKPLPELESESNGCVSTTPGSKSNTKTLPDELGSGAHPAKVSWIQKSSWKELLGQGGSAAFSASLILPKPDSGID QQRTDDPSTPSSASDETENSESDDEYPGSEPTNTQVIQESAEPQPTNKRVIKELAKAQPTDKGVINEPAEVQPINKGVMN EPTEAHPTHKQVTNELAETQHNVAPNNTGRGASWLRKQSWTQLVSPSNNSFSISQILPDITFPEPIFKEPVVDPANSDDC KHGGVNMDTTNEAFNGEIIPEKSQHTDASDTAAPVVEQKTETSPGDDDTSTADIEIGETCSFMRSAASLKEWAKAKAALS GSLKRKRGEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 92 | 92 | 1.7E-11 | ||
| PANTHER | 1 | 647 | 647 | 8.4E-120 | – | |
| SUPERFAMILY | 6 | 101 | 96 | 5.02E-11 | ||
| ProSiteProfiles | 11 | 89 | 79 | 12.475 | ||
| CDD | 12 | 88 | 77 | 6.12378E-24 | ||
| SMART | 12 | 85 | 74 | 2.0E-4 | ||
| Pfam | 13 | 55 | 43 | 2.7E-5 | ||
| MobiDBLite | 105 | 137 | 33 | - | – | |
| MobiDBLite | 105 | 136 | 32 | - | – | |
| MobiDBLite | 277 | 332 | 56 | - | – | |
| MobiDBLite | 277 | 364 | 88 | - | – | |
| MobiDBLite | 335 | 355 | 21 | - | – | |
| MobiDBLite | 389 | 488 | 100 | - | – | |
| MobiDBLite | 402 | 416 | 15 | - | – | |
| MobiDBLite | 426 | 445 | 20 | - | – | |
| MobiDBLite | 583 | 616 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0213200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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