Transcript — View — Lotus Base

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LotjaGi6g1v0218700.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0218700
Transcript ID	LotjaGi6g1v0218700.1
Lotus japonicus genome version	Gifu v1.2
Description	Jasmonate ZIM domain-containing protein; TAIR: AT5G20900.1 jasmonate-zim-domain protein 12; Swiss-Prot: sp\|Q9C5K8\|TIF3B_ARATH Protein TIFY 3B; TrEMBL-Plants: tr\|I3T444\|I3T444_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0218700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:52084005..52086662) extracted from Lotus japonicus Gifu genome v1.2.

GGCATGTGTCATGGCGTTGTACTTTGTTGATTTTAAGAAGGAGACATAAATATTAAAATAAGCACAAGAAACACGTTTCT TAAAGATGCCGGCACTAAAATTATTCACGGTTGGTCACCTCAACACTACAGACAGGTGACAAGGAATCAAAATCTTCCTC CTTTCTCAGACCATTCAAATCTCTTTCAACACTTTGCAAATTCCGCAACAAAAACCATTTTTCCCTTCAACCATTCTCCT CTTCCTTAATTTCTGGTGTTGGGTTTTCTTCTCCAAACCATGGATGGTGTTACTGTTAAGCTTGAGCCAGAACAGCAGGT TTCAGCTCTAGAATCTTCACCTCATGGTGACAGTGTTGATGGGGTTGCTACTAACAAGTATGTCTTAAGATCCTTCTTTT TGTTGTTGTTTCCATTTATTGTTTTCCTTTCATGAATAGTTAATTACCCACTTGCTTGGTTAGTTTAATTTTGGTCAAAT TTTTGTTTTTTTTTTGTGGATGGAAAACATTGGATGCACAATAAGTTGTTCTTAATTAGTGTTTCCATTTGTGTGAGATG AGAGCCTGAGCTTGTAATTAATGAAAAGGTGGGGGGGGGGGGTATGTTATGTAAAAGGGGTTTTGGTTAACCTAAGAAAG CTATGAGATTGAGGGGGTTTGATTTGGGTAATGAATTTTTCTTGGCAAGAATCAAATTCTAGAAAATCCAGGAATGTCAG CAGTTTTTGTATCTCCAAAAAATATTCTGAGAGAAATAACAACTTAGCTTTATTCTAGTTTAGGTGGAATCTGCTATATT GATGCCATTTGACTTTATCAAAATCCAATTTTTTCAATTAAGTCATTTTGCTTAAGGTCTTAGTCAGTGGTTTCTCCAGA AGTGTTTATAATCAACTATTCTTATTGGAGCCTTTATTGATTTTCTTTTCACATGGTGAAGTCACCACATCAAGCAAGTT TCTGTTTTCTCCTCAATATGTGCTATTCCATGTTTGTATTAAATCTGATAATTTCTTGTATATACACTCATTTACCTCAA CATTTCCCATCTCTGCTACACTGATTTTTTGTTATGCCCTGGGTGTAACCTCAATACAACTTTTCTGTACTTTAGTTACA AGGTAAGGACTAAAAAGCCTGTTTGGATACCTAGGAAGTATGAAAACGGGAAAATAACACTTCCGGGACACTTTTTGTTG AAGTAGCAACTTGTTCGGGATGTGTTATTTTCCCGCTTTCATACTTCCTAACGAGTATCCAATCGGGCTCTAAGACCTCT TGAATCTTGATGGTTGGGGGCAAAAAAGCTGATGAATGTTCCAATACTTTAATGTGTGCTTGTGTGGTTTTTTATTTTTA TTGTTATTCTCTCTTTTAGGTCAGTGGCTGCATCTGGACTGAATGCTGTGATTCCTAATACAAGTAAGGTTACCATCTTC TATAATGGGAGTGTTCATATCTATGATGGAATACCGGCAGATAAGGTAATTATTGCTGCACTTAGATATGAATACTGAAT CTTGCAGCTGTTGTGCCTTCAATCCAAATCATATATTTACTTTCTCTTATTTACTCGCAGGTGCATGAAATAATGCTTAT TGCTGCTGCTGCCGCCAAGTCTGTTGAAACAAAGAAGATTGGAATGCAATCTCCCATCATTTCACCAGTTCCCTCAAGGC CTTCTTCTCCACATGGAACCACTAATAATATTGCTTCAACCCAGGAACTTTGCTTTCCTGCAAAGAAGAGTTCCATCTGC AGGCTGCAAGGTGGTAATTTCCCCAATACTTTTGCTAGATTTAGATGTCAATCTCAAACAATTTTGTCTTCTTTATCATT TACTACTTAGCCAATGTGTTGTCTGTTATTTTAATGTCATATGACAATTTAAGTATCTCTTGTGACTTTTGCTTGATTTC TCTCCAGAATTTCCAATAGCACGCCGTCATTCACTTCAAAGTTTTCTTGAGAAGCGGCGAAACAGGTACTATCTTCCTTC CATTTAATCTGTTTAGAGTTTCCAATTTTGTATATGATTGTCATATACTAGTTTTCTTATTTGCATCATTTTTGTTTGTT AAAGGCTGGGGAGCAAAGCCCCTTATTCTTCTTCATCAACAACAAAAGCGGCAGTGGCAGACAACATAGAAAACAACTTC TCTGCTGACAATGCACCAGATTTGGTTTCCTCGAAACGACCAGAGGAGAAATTTCAGCCAACTATATCTGCCTCTTGAGA GTGATCAGTGTTGGTTCTGCTTTATGTGTTGTGTTTATGTGGAAGGTAGTGTGCATGCATGTGACTTACAGGAGCTAGTG TAATTGTTACCATGTTCTGGAGTCTGTAACTTTATTTTATATGCAACTTAACTCTTGAACTCAGAATGTTCAAAAGTGTG ACTTGAAACTTGCATGTCAGGGTATGTCTAGAAAGAATGCATTGTGCTCAGATCACCCCAACTTTGAACTGTTTTTCATG TATCTGAATGTGTCTATGTACAACTGATTATTCGTTTTGTTAATGTTTGAACATCTACTCTTATGACAGCTTTTAGCCTT TCCATCTCTAGTTTTTCTTTGCAAATTGATCCTTATCCTCAAATTTTTCCGGATTTGTCTATATGCACCAGCTTTTACTG GTGCATTTTTGAATCATC

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0218700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGGTGTTACTGTTAAGCTTGAGCCAGAACAGCAGGTTTCAGCTCTAGAATCTTCACCTCATGGTGACAGTGTTGA TGGGGTTGCTACTAACAAGTCAGTGGCTGCATCTGGACTGAATGCTGTGATTCCTAATACAAGTAAGGTTACCATCTTCT ATAATGGGAGTGTTCATATCTATGATGGAATACCGGCAGATAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCCGCC AAGTCTGTTGAAACAAAGAAGATTGGAATGCAATCTCCCATCATTTCACCAGTTCCCTCAAGGCCTTCTTCTCCACATGG AACCACTAATAATATTGCTTCAACCCAGGAACTTTGCTTTCCTGCAAAGAAGAGTTCCATCTGCAGGCTGCAAGAATTTC CAATAGCACGCCGTCATTCACTTCAAAGTTTTCTTGAGAAGCGGCGAAACAGGCTGGGGAGCAAAGCCCCTTATTCTTCT TCATCAACAACAAAAGCGGCAGTGGCAGACAACATAGAAAACAACTTCTCTGCTGACAATGCACCAGATTTGGTTTCCTC GAAACGACCAGAGGAGAAATTTCAGCCAACTATATCTGCCTCTTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0218700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDGVTVKLEPEQQVSALESSPHGDSVDGVATNKSVAASGLNAVIPNTSKVTIFYNGSVHIYDGIPADKVHEIMLIAAAAA KSVETKKIGMQSPIISPVPSRPSSPHGTTNNIASTQELCFPAKKSSICRLQEFPIARRHSLQSFLEKRRNRLGSKAPYSS SSTTKAAVADNIENNFSADNAPDLVSSKRPEEKFQPTISAS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	29	29	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	12	29	18	-	–
PANTHER	PTHR33077:SF78 View details on PTHR33077:SF78 Search for proteins/transripts with this domain View external data on PTHR33077:SF78	12	200	189	2.1E-63	–
PANTHER	PTHR33077 View details on PTHR33077 Search for proteins/transripts with this domain View external data on PTHR33077	12	200	189	2.1E-63	IPR040390 Show description in modal box View details on IPR040390 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00979 View details on SM00979 Search for proteins/transripts with this domain View external data on SM00979	43	78	36	8.9E-12	IPR010399 Show description in modal box View details on IPR010399 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51320 View details on PS51320 Search for proteins/transripts with this domain View external data on PS51320	43	78	36	14.116	IPR010399 Show description in modal box View details on IPR010399 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF06200 View details on PF06200 Search for proteins/transripts with this domain View external data on PF06200	45	77	33	2.9E-13	IPR010399 Show description in modal box View details on IPR010399 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF09425 View details on PF09425 Search for proteins/transripts with this domain View external data on PF09425	134	159	26	3.0E-11	IPR018467 Show description in modal box View details on IPR018467 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	171	201	31	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0218700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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