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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0224100 |
| Transcript ID | LotjaGi6g1v0224100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LURP-one-like protein; TAIR: AT2G05910.1 LURP-one-like protein (DUF567); Swiss-Prot: sp|Q9ZUF7|LOR6_ARATH Protein LURP-one-related 6; TrEMBL-Plants: tr|I1L1Q7|I1L1Q7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0224100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52900185..52902422) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAATTGAGCAATGTCACACAGTGAAATGCACAAGTTAACCCAAATTTACATCTTATCCAAAAAGCAACCTCTACCAA TGCAATATTCTTTCAATCTCCTACGTCAAACCTTGCCAAACCCTTCAGAGAAAGTCGAGTCACAGAAGCTAGAAAAAGTC ATTTCTTATTATTTAAGACATTCTTTCTTCCAATCAGAGACCTGAAAACTTTGTGTATAGTTTGTATATAAAAGTAGTTG TTACAGATTTGATGAGAGCATACAAGTTTTTATCTCTTGTGAAAGCCAAGAAAGTTCTAATTAGCAACAATCATCATAGA TTAGAGAAAGAAAGACAGCTCGAGATTTTGAACATGAACAGCAAGATGGCTATTGTTAGCAAACTCTATTGTTCATCTTC TCAGACGGTGTTAGGGGTCAGGAGGAGGCCACATGTGGTGAATGGAGGGGGTTTTGTGGTCACTGATTGCAGTTCCAAGA GGGTTATTTTCAAAGTTCATGGCTGTGGAGTTCATGGTAAACAGGAAGAGCTGATTCTTAGAGATGAGGACGAAGAGGCT TTACTTCTCATGCGTCGAAAGGTATACAAATCGCTACATTTACTTCATCTTTTAATGTATGTTTGCAAACTCGTTTGAAA ATCACAACAAAACCAAAATCACGGTAAATAAAAGCAAAAGCTGAGGAAATCTTGCTTCTACCCACCATAATTTTGCTTTA CTGTGGTTTTCGAAGGACTTTCCAAATACACCCTTCAACTATATGTATGTATATGTTGATTTCATTTGTTTTTGTTATGA GTTTGAATTTATAAGTAGACAGGGTTTGACATAAGGCAAAGGTAAAATTTTAAAACTTTTCAACTTTAATTGTTGTACAT GTGCAGGGAGGCATGGTTGAGGCCCTCAGCATTTACAAGAAGTGGAAAGGTTACCGAGTAGACTATGAAGGATTACAGAA CCTGGTTTTCAGCTTAAAAGAACCCAATTCCTGTTTGGCCAGGAACAATAGAATAAGAATCTCCATTGAGCCCAGTAACA AAGGTTGGGACTTTGAGATCAGGGGATATTTCCCTGATAAGCATTGTAGCATTGTTGACACTAAAGGCAATGTTGTAGCC CAGGTAAATAATTATACAAATATGGTAGCGGACCATATTAAAAACGGATCCACCAATTAACTATGTTTTTTACATTCTGT TATTTATAATGTGTAGCTTATGTGTTAAAATTAATTTGCAGAGAAATCATTTTAAGTAAAAAAAATTCTTATCCAAGGTA GACAAAATCCTAAATTATAGCATGTCATTGTAAACTAGTGTGGGCATGATCCATTGATATATATGTGCAGGTTGGTGTGA GTAAGGAAGTGGAGAAAATGATGGAAATCAAGGATCTGTATCATGTGGTGGTAAAACCAGGGATAGACCAAGCTTTTGTT GTTGGAGTAATTGCTGTCCTTGACAACATTTATGGCGAATCCACATACTGCTAATTTGCTGAATCTAAAATTGTGAATTG TGTGCTACATATGGTTTGCTGTTATTAATTACTATATAAAACGAATCATGGTTTTGTACTCCAATTATGAAGTTTGCAGC TAAATGGGGATTGAGAATTATGAAGGAATGGGATAATGTTCAACTAGTCAAGGAAATTTCCGTGTACATAATGGAAAGGA AGTTTGGCTGGTACTTAGGATAATTTGTTGTATTATATGTGTACGTTTTTGTTTCTGTATGGGATTTGCATGATATTTGA CAATGATGGACGTGAAAGGTATTTAATTTGATTATTGCCAGTGTTTTATGGAATCACTCTGTGAATTTGGATTGGTCATG AGGATAGGGAGTTAGCATTTTGAACTAAAGTACCACCTAATTGGACAAATTAGGCATATGGATATGACTTCTTTGTTGCT TGCTACGATACCATAACACTTAGTTGGGGTATGATACAAGACATGACGTGAACCAATGACATTTAAGTGAGTGTTCTTCT TTTTCCCATATATGTTTTAAAATTAAACAAAAATTCAAATACACTGTCAGATGTCAATTTCCTATTAGTACACGTCAAAT CTCATCAGTCATGGAGGTATGGTAGAATTCCCTGACTACTTTTGTTATAAAAGGTGACTTCGTCAATAAAATTTCTTGAT TGAATGCATTTTTTTTCTCAATCATGGGTGAACCAATAATTTACTGAAGAGGTTCTGGGCATAAAAGCTTAAAGGGAC
CDS sequence (LotjaGi6g1v0224100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGCATACAAGTTTTTATCTCTTGTGAAAGCCAAGAAAGTTCTAATTAGCAACAATCATCATAGATTAGAGAAAGA AAGACAGCTCGAGATTTTGAACATGAACAGCAAGATGGCTATTGTTAGCAAACTCTATTGTTCATCTTCTCAGACGGTGT TAGGGGTCAGGAGGAGGCCACATGTGGTGAATGGAGGGGGTTTTGTGGTCACTGATTGCAGTTCCAAGAGGGTTATTTTC AAAGTTCATGGCTGTGGAGTTCATGGTAAACAGGAAGAGCTGATTCTTAGAGATGAGGACGAAGAGGCTTTACTTCTCAT GCGTCGAAAGGGAGGCATGGTTGAGGCCCTCAGCATTTACAAGAAGTGGAAAGGTTACCGAGTAGACTATGAAGGATTAC AGAACCTGGTTTTCAGCTTAAAAGAACCCAATTCCTGTTTGGCCAGGAACAATAGAATAAGAATCTCCATTGAGCCCAGT AACAAAGGTTGGGACTTTGAGATCAGGGGATATTTCCCTGATAAGCATTGTAGCATTGTTGACACTAAAGGCAATGTTGT AGCCCAGGTTGGTGTGAGTAAGGAAGTGGAGAAAATGATGGAAATCAAGGATCTGTATCATGTGGTGGTAAAACCAGGGA TAGACCAAGCTTTTGTTGTTGGAGTAATTGCTGTCCTTGACAACATTTATGGCGAATCCACATACTGCTAA
Protein sequence (LotjaGi6g1v0224100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRAYKFLSLVKAKKVLISNNHHRLEKERQLEILNMNSKMAIVSKLYCSSSQTVLGVRRRPHVVNGGGFVVTDCSSKRVIF KVHGCGVHGKQEELILRDEDEEALLLMRRKGGMVEALSIYKKWKGYRVDYEGLQNLVFSLKEPNSCLARNNRIRISIEPS NKGWDFEIRGYFPDKHCSIVDTKGNVVAQVGVSKEVEKMMEIKDLYHVVVKPGIDQAFVVGVIAVLDNIYGESTYC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 235 | 199 | 9.2E-87 | – | |
| PANTHER | 37 | 235 | 199 | 9.2E-87 | ||
| SUPERFAMILY | 39 | 230 | 192 | 6.8E-37 | ||
| Gene3D | 39 | 234 | 196 | 8.1E-39 | ||
| Pfam | 40 | 225 | 186 | 3.2E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0224100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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