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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0230800 |
| Transcript ID | LotjaGi6g1v0230800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT5G04600.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O74978|YQL5_SCHPO Uncharacterized RNA-binding protein C1827.05c; TrEMBL-Plants: tr|I1JG14|I1JG14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0230800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53947993..53950632) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAAACACCAGGGTCTCCCTTCTCGTGCAAGCTGCGGCGTAACCCTTTTCGGCACCATCTCTGCCTCCGTCGCAGAG TTTGCTCCGCCCTCTTCGTCCGGTTTTCGTTCTCGCCCACAGGTTCGCAGTCTCCATTTGAATACCATTCGTTTCTGTGT ACTTGTATTTCTTGGTTCATACTGCAACCTGTTTCTGTTACTGTGTTTATTTGAGCACACTCAGTGTTCAGCTCACACAA AACTTCTGTTCATCTATGCATTGTTGAAGTGAATATATGGTTTCATATACTAGGAAGATAGTGTAGAGTACTGAGGTTTT CTGTTTCCATGTTGTAGCAATTTCCTATCTGTTGCTAGATAGACTAGAATTTGTCATTCATGTTCATGTTCAGATTATTT TGTTGTTTTGTTAGGATTTGGATAGTGTGATGGCCAAGAAGGCGAACAAAGCGATGAACAAGAGTTTGAAAAGGGTCACT GCTATTAATAAACCATCTGAGGGTCCTGATTTTTTGGTATGTCAATGTTTATTATCACTTGATTTTTTTTGTTTTGTCAA TGGTGTTTTGATTTGACATTTAATTTTTGATTTTCCATTGTTGAAGCCTTTGGAAGGTGGTCCTGCTCGTAAACTTCCTG AACAGAAACCGTTGGAGAATAAGGGCAGGGTCTTGTATGTTGGTCGGATTCCGCATGGGTTCTATGAGAAGGAGATTGAA GGTTGAGTTCACTTCACCTATGTTTTGTTGTTTGTTCCTCAATTTTTTAATATTGTTTAGCTGGAATATGTGTTTATAAT TTGGTAATTGTAGGTTATTTTGGACAATTTGGAACCATCAAGAGATTGAGAATTGCCAGAAACAAAACGGTTTGGTTCCT AAACTTGTTTCCTGTATATCTGTTTTTTTGCTTACTCTTGTGCCAACTTAATTATTATTTTTGGCTTGGTTCACTTTTAT CCCGAAAATCGTAATTATAATTTCACTGGCTATTCGTCTGGAATGTTTCATTATTTTGTGTGTCTGTTCTCCAAATTTGA AAAAATTTCAGTTTCAAAATGAAAAATGTTCAGACATTATATGTTAATAGGTATCAGTTCCTCTTGCCTTTAGCCCTTTA GCATTCATTGCCTGGAAGACAATGCCGGTGTGGATCAATGTTTTGATCCTTTTTTGTTGTGACTGGTTCTTTTGGATGGA TGTTTGGCCTTTGAGCCATTATGTTACTTGGTTCAGAAAAATACATGCATTCAACAACATCTATTTACCGTTTAATTATC CTTTTCGCTGATAATTGATATTAGTTTTAGCTGATTGATATTGATCATACCTATTTCTTGATGTTTAACAGACTGGAAAA TCAAGACATTTTGGGTTCATAGAATTCGAATCTCCTGAGGTAGTTGTTGTTTCCTCTGACCGGTTGCTGTATTGTGACTT GTGGCTTTTATCTGTAATATAAACTTCTATTTCCCTGTGCTGATGACTTTTTTTCGTTTTGTAGGTAGCAAAAATTGTAG CTGATACTATGCACAATTATCTACTATTTGAACACCTTCTCCAGGTTCATGTGATACCTCCAGAGCATGTTCATTCAATG TTGTAAGTTATTAAATCTTAATCTTGCATTGGTTTTTAACCAAATACCCTACATGCCTAAAAGAAGAGCATAATTCCCAA TCATATTTCCAACCTTTCTATTATAGCCTATAAAATACTAGCATATCTAGTCAGTCACATTTGACTGGACTAATTGCATA CTAAATGTCTTGAGTCCAGTAAAAGAGTTAGTTTTGTGTCCTGAATATCTTCCAAGAGAATTACATGATGTGGGATTTTT TCTCCGTAGATGGAGAGGATTCAATTACCGTTACAAGCCATTGGACTCGGTCCAAATGCAGCGGGAGCGACATGACAAGG TAACTAGTTCATTAAAGAAGATAGTATATCAGTCTGATTCTCAGTATAAAAGAAAACTTGTTATGTTCATTTTCAGGAAA AAACATTGGAAGAGCACAGGAAGTTGGTCGAAAAGATTTTGAGCCGTGATAAAAAACGACGTAAAAGTATAGTGGCTGCT GGCATTGATTATGAATGCCCTGAGATTGTGAGCTTTTTAACTTTGCCAATATGTGGTTGCTTTGGTGTTCTAAAGTCCAA ATCTTGAATTTCATTCTCATGTTGTGTGATTGTTGTTGCAGGTGGGTAACATCCAGCCTGCTCCAAAGAAATTGAAGTTT GAAGACTGAGAGACTACTGTTTTAGAAGTATTAGCAATGACTTGCAAGGTTTAGTGATGTTTTATTCTTGTGCCAAGTGT CTACCTAACTAGCAAATCATGTTATGGCCTCAGTATTTTCTCTACCACAGATTCCTAATAGATCTTATTGAAGAAAACTA AGAAACCAGATATTTTAATTAGTCTTCATTTTTTCCTGAACTTGATTTGGATCAATTGGTCTGAGGTGGACAGTCAAAAC CGCCGTCTCTATAAAGCTCCGAACCGATTTTCCACAAAGAATTTTTGAGTAACATTGGATTTCTAATGTATAGGTAATGT GTAGAAAATCAATTGTAGGTTATTATATAGTGACTTGTCATTTTGACCATATTTCAAGACTATATCCATCAAACTTTTCA
CDS sequence (LotjaGi6g1v0230800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGAAGGCGAACAAAGCGATGAACAAGAGTTTGAAAAGGGTCACTGCTATTAATAAACCATCTGAGGGTCCTGA TTTTTTGCCTTTGGAAGGTGGTCCTGCTCGTAAACTTCCTGAACAGAAACCGTTGGAGAATAAGGGCAGGGTCTTGTATG TTGGTCGGATTCCGCATGGGTTCTATGAGAAGGAGATTGAAGGTTATTTTGGACAATTTGGAACCATCAAGAGATTGAGA ATTGCCAGAAACAAAACGACTGGAAAATCAAGACATTTTGGGTTCATAGAATTCGAATCTCCTGAGGTAGCAAAAATTGT AGCTGATACTATGCACAATTATCTACTATTTGAACACCTTCTCCAGGTTCATGTGATACCTCCAGAGCATGTTCATTCAA TGTTATGGAGAGGATTCAATTACCGTTACAAGCCATTGGACTCGGTCCAAATGCAGCGGGAGCGACATGACAAGGAAAAA ACATTGGAAGAGCACAGGAAGTTGGTCGAAAAGATTTTGAGCCGTGATAAAAAACGACGTAAAAGTATAGTGGCTGCTGG CATTGATTATGAATGCCCTGAGATTGTGGGTAACATCCAGCCTGCTCCAAAGAAATTGAAGTTTGAAGACTGA
Protein sequence (LotjaGi6g1v0230800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKANKAMNKSLKRVTAINKPSEGPDFLPLEGGPARKLPEQKPLENKGRVLYVGRIPHGFYEKEIEGYFGQFGTIKRLR IARNKTTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVHVIPPEHVHSMLWRGFNYRYKPLDSVQMQRERHDKEK TLEEHRKLVEKILSRDKKRRKSIVAAGIDYECPEIVGNIQPAPKKLKFED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 42 | 42 | - | – | |
| Gene3D | 2 | 132 | 131 | 2.5E-23 | ||
| PANTHER | 3 | 210 | 208 | 2.6E-100 | – | |
| PANTHER | 3 | 210 | 208 | 2.6E-100 | – | |
| SUPERFAMILY | 49 | 196 | 148 | 2.82E-24 | ||
| ProSiteProfiles | 50 | 128 | 79 | 14.948 | ||
| CDD | 51 | 124 | 74 | 9.59454E-43 | – | |
| SMART | 51 | 124 | 74 | 1.2E-19 | ||
| Pfam | 52 | 118 | 67 | 1.8E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0230800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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