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LotjaGi6g1v0239600.1

Overview

Field Value
Gene ID LotjaGi6g1v0239600
Transcript ID LotjaGi6g1v0239600.1
Lotus japonicus genome version Gifu v1.2
Description DUF630 family protein (DUF630 and DUF632); TAIR: AT2G19090.1 DUF630 family protein (DUF630 and DUF632); Swiss-Prot: sp|Q8T5T1|MDN1_GIAIN Midasin; TrEMBL-Plants: tr|K7MBS2|K7MBS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0239600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:55070894..55075788) extracted from Lotus japonicus Gifu genome v1.2.

AATTTTGTCTCTTTTTTTTTGTGTTATGTGTTTTTTTTAATGTGTGTTGTTTTTTTCCTCCTTGTGTTTTGACCGTTGCT TTTTTTCTCTTTCTCTCTTCACACACAACCCTTTCTTTCTCACTGATTCCTTCTCCACTGTCCTTGATCAAAAGCACCCT CTTGTTCCATAACACCATTGTCAGGTATGGTTCTTCATTCTAAGCTTCAACTCTGAATAATACTTGTTGTTAACCATATT TATCATTTTGTTTCTTCTTTTGGCATTCTCTCCTTCATTTTCTCCAACTATCAGTTGTACAAACATAAATACTTGGTTTG GTTCTTAAAAGTAAGATATTGAGTAAAGGGGTGTGATGGAAATTTTTTGTCTTCCTCAAAATGGGTACTTTGTTTCTATG TTTAGCAGCTCAGTTCTGATTCTTCTTGAACATTTTCCTCACTTTTATCTGGTTTTTTTTTTCAGTACAACCACTTCAAT TTCTTGCTCTTTAGATTTTCCTAAACTTATATTGATCTGTTTTACACATTCTTAGCAATGTATCTCTTGATGTTTCTTTA TATTAACATGTATGTATGTGTTTAGTTTGTGGCATCCTTTCCTTTTATTATCATTTCTTTTTTCTTCCGAGACTTTAGTT GAATTATTTCCTCTTTTTTTGCCTAAAAAATTTTCCCAAATTCCTCTTTCCTCATGTATTCTGGTAGAGCATAGTTTGGT TTTTCTGGAAATCATAGAGGAAAAGCTTAGAAAGTTTTCCATTATTTGCTTCTGTTAAGCATTTCTGAATTCTCATTACC CTTCTTCTGGCTTGGAAACAAAGAGAAGTATCTAAATGCATCAACATTGTATAATATTGAATTTTTATTTCTATATTTGG TCTCATGTTTGGTGGAATTTTAGCAATACACTGAATTTTTCTATTTTTGGTGACAGATTTGTGATTCCTGTATGAATCTG GTGAGATATAAAGAAGGATTCTCCTTTGATTTCCATGCCAGTTCACGGTTGAGATATTCTTAAGGGAGCAAGAGATGGGA TGTTCACACTCAAAGCTGGAAGATGAAGAATCAGTTCAGCTTTGTAAAGATAGAAAGAAGTTCATCAAGCAGGCTGTTGA GCAAAGAACTCGATTCGCGACCGGACACATGGCCTACATTGAATCTCTGAGTAGGGTTTCAGCAGCTCTTCGTGATTACA TCGAGGGAGACGAGCCTCGCGAGTTCTCATTAGACTCGGTCATGAACCCGCCTTTCACACCTGTGAAGAAAACTGGCCCA GGCTTCATTCCCATCTCAGCAAAATCCTTCACACCTTCATCAACAATTGAGTTTGGAGTTGGACCAAATTCCACTTTGAA AGTGAATTACCTTAGGCCAGGTGGTAATCCAGCAATTTCGGTTGAGGAAAGGCCTCAGTCTCCTGAGATGATGAGGGTTG AATCATATTCTCCGATGCGGCATTATGGCATGGATGGTTTTTTTGCTATGCAACCCCCACCTGGGAACCCTTCAATTTTT GCTTACTCTCCCAATAATAGGCCTAGTATCCCTCCCCCTTCACCTCAAACTTCTCAATGGGACTTCTTTTGGAACCCATT TTCATCATTGGACAACTATGGTTACCCTACCCGAAGCAGCCTTGATCAGACCGCTATGGATGATGAGTACAGAGGACTGA GGCAGGTCCGAGAAGAGGAGGGAATACCAGACTTGGAAGAAGATGAAACTGAACAAGAAGTTTATGTTAGGAAAAGAAAA GTAGCAGAAGAAAGAACCAGACCTGATATGCATTCCTCCAAAGAACAAGTCATTGTTGAAGATGTTGATGAGGATGAGGA TGAGGATGATGATGATCATGATCATGACGAACATGATGTTGATGATGACGATGATGATGATGATGATGAGGAAGAGGACG AGGACGAGGACGAGGATGAGGAAGAGGAGGGAACAAATACTGAAGCTGAGCATGATGCCACAGGTTCGCAGGCCCATGGT AGTTCTAGTTTTGAAGTATCAAAATCTCAAGCTGCTGGTCATATTAAGTCCAGACATCGCGAAATGGCAATCGGTAAACA AGAAGCTAAGGAAGAAGCACCAGGTTTTACTGTTTATGTAAACCGAAGGCCAACAAGCATGGCGGAAGTTATCAATGATC TTGAAGCTCAATTCACAACTGTCTGCAATGCAGCCAATGATGTCTCAGCATTGTTAGAGGCCAAGAAAGCGCAGTACTTA TTGCCACCTAATGAACTTTCAGGTTTGATTGAGATATTCAATATATAATTTGATTTTGTTTTAAGTGTGCTTTCATGTTC ATGCATTCTATTATGAGCTTAACTCCTTATGAATAGGGGAACAAATTAATTAGCAGTCTCAAATTTGATAATAAACCCCA ATCAAAAGTTTGTTTATGGAGGGGGGATTACCATATAGAAAATATGCATGTTATGTATCCAGAAATCATCTTTTTCTTAT TCACAACTCCTCATTTAAATCTAGTAAATCTTTTTTTTTCACTCATTGGCATACCTATCTGTAAATTTTCAGGAATATGA ATTTGAATTATATTTCATTTGCAGCATCGAAGTTGCTAAACCCGGTAGCTCTGTTCCGGTCAGCTTCTTCACGGTCTACT TCATCAAGATTTTTAATGAATTGTACTAGCACTATAGAGGAAGGTTGTGAGGGCACTAAAAATATCACAGAGGAACATTG TATGGTTTCCGGTAGTCACCAAACCACATTGGACAGATTAAATGCATGGGAGAAGAAGCTGTATGAGGAAGTCAAGGTAT ATTATCAACTTTCTATCCATGATGAAGTCAAAGCTTTCTGAAAATATTTGAATAAACTTCTCTGTCCTGAAATTCTTAGA TACATATAATTGTTATTTGAAAAATAGCCTAGAAAACTGGCACTCATAACTGTTCCCGCTTGCCACCAGTTCAAAAAACT TTCTCTAGGCCCTTGGGTTTTTTTCTCAATTATGTATGTAAGATTCTTGGTAGACAATTCTTCGTAATCATAGATCCTTA GTGGATGAAGATAATGATTCACTGATGTTATGTACTCATCAATTACATATAAGCTGTTGAAATTCATTCAGTTATTGTAC TTGTTTATGAGTAAACATGAAATGGGTCCAACTTCAACATAATGTGAAAATTCACAATGCCTCTAACTTAGTATAAACCT TTCAGTTAGATGTTTAACAGGATTGGGAAAAGCCACTGACTGAGGTCAACTTCAACTGCTTATTTTTTGTTCAGTCATTT TTCAGTTGGTCTCTCATTTAAAAAAAAAATAGATTATCTATTATTGTTACAGGTCAATATGCTTATGATCACAGACAATT TTATTTTAATATTGGGAAACTTATCAGTTACTGAGTCCACTCTCTTCTTCAACAGTCTGGAGAACGTGTCCGAATTGCAT ATGAGAAAAAATGCAAGCAGCTAAGGAACCATGAAGTAAAAGGAGATGACCCCTCTTCTGCAGATAAAACAAGAGCAGCC ATTAGGGATCTAGATACCAAGATAACAGTTTCAATACACTCAGTTGAAGCTATTTGCAGGAGAATTGAAACTCTAAGGGA TGAAGAGTTGCATCCCCAACTTCTTGAATTGGTGCAAGGGTATGTATGAAAGTCATTATGATTATCCCCATATGTCTTAG TTTTCTAGATGAACAAAACCATTTTGTCTGTCAAACTTTGAAGTATTTTTAGATTTCAAACATACCTTAAGGACCGTTTT CTATACAGAAACTTTCCTAACTAAAAGAAATATTGGATTGCATTTAATAGCATTTATATGATTCTTGTTGATCCTTCAAT TATACAAATGACAGGCTGGAAAAGATGTGGAAAGTAATGGCAGAATGTCATCAGACACAGAAGAGAACCTTAGATGAAGC TAAGGTTCTTCTAGCTGGCACTCCTTCAAAATCACATGCCAGAAAACACTCTTCCATGTCAATGACTGATCCAAATAGAC TCGCACGTTCAGCCTCGAATCTCGAATTTGAGTTAAGGAACTGGCGAAACACCTTCGAGTCTTGGATCACTTCTCAAAGA TCCTATGCTCATGCACTAACCGGATGGCTTCTCCGGTGTGTGAGATCTGAGTCTAATGATGTATCGAAGCTACCATGCTC TCCGCATAGATCCAGTGGCACCCACCCTTTATTTGGACTCTGTGTTCAGTGGTCAAGGCACCTAGACGCCATACATGAGA AGGCAGTGCTTGATGGCTTGGATTTTTTTGCAGCTGGAATGGGGTCCCTCTATGCACATCAATTGAGACAAGATTCTAGG CCAAGACAAACCAATGGGGGCATGGAAATGGTGGAGTTTGGTCAGGTGGAAGAGGAGGTAATGGCACCGGAAAAACTGGC TGAGGTTGCTATTAAGGTACTTTGTGCTGGAATGTCTGTTGCTATGAGCTCATTGGCAGAGTTTGCTTTTGATTCTGCTG AGGGATACAGTGAAGTTATTAAGCAGTGGGAGAATGTGAAATCTCAAAATACTTCTAGTGAGACATAGAACATAGATGAT GTCTCACATTTTGTTCACTTAGTTCATTAGTTTAGGCTTGTTTAGCAACGGGTGTCCCTCAATGTAATTATGTATTTAAC TAATCAATATAGAGGTAGAATAGCAAGGGGAATAGCACCCTTTATTGTTCAAATGGACTTTTTTTCACTACTAAATCCTC CATTTCTGGAAACCACTTTGGTTCCTGCTAAATGGATTCATTTAATCAGAAGTTTAGAAGATAGACTACTGCATTTCAAG GCTGAAAAGATGTTAATCTAATTATACCAGAAAACTACACTCTACTAAAATTGTTTTGCACCGTTAGCCTTAATCCACTA TATGAATGATCTCTG 

CDS sequence (LotjaGi6g1v0239600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGATGTTCACACTCAAAGCTGGAAGATGAAGAATCAGTTCAGCTTTGTAAAGATAGAAAGAAGTTCATCAAGCAGGC TGTTGAGCAAAGAACTCGATTCGCGACCGGACACATGGCCTACATTGAATCTCTGAGTAGGGTTTCAGCAGCTCTTCGTG ATTACATCGAGGGAGACGAGCCTCGCGAGTTCTCATTAGACTCGGTCATGAACCCGCCTTTCACACCTGTGAAGAAAACT GGCCCAGGCTTCATTCCCATCTCAGCAAAATCCTTCACACCTTCATCAACAATTGAGTTTGGAGTTGGACCAAATTCCAC TTTGAAAGTGAATTACCTTAGGCCAGGTGGTAATCCAGCAATTTCGGTTGAGGAAAGGCCTCAGTCTCCTGAGATGATGA GGGTTGAATCATATTCTCCGATGCGGCATTATGGCATGGATGGTTTTTTTGCTATGCAACCCCCACCTGGGAACCCTTCA ATTTTTGCTTACTCTCCCAATAATAGGCCTAGTATCCCTCCCCCTTCACCTCAAACTTCTCAATGGGACTTCTTTTGGAA CCCATTTTCATCATTGGACAACTATGGTTACCCTACCCGAAGCAGCCTTGATCAGACCGCTATGGATGATGAGTACAGAG GACTGAGGCAGGTCCGAGAAGAGGAGGGAATACCAGACTTGGAAGAAGATGAAACTGAACAAGAAGTTTATGTTAGGAAA AGAAAAGTAGCAGAAGAAAGAACCAGACCTGATATGCATTCCTCCAAAGAACAAGTCATTGTTGAAGATGTTGATGAGGA TGAGGATGAGGATGATGATGATCATGATCATGACGAACATGATGTTGATGATGACGATGATGATGATGATGATGAGGAAG AGGACGAGGACGAGGACGAGGATGAGGAAGAGGAGGGAACAAATACTGAAGCTGAGCATGATGCCACAGGTTCGCAGGCC CATGGTAGTTCTAGTTTTGAAGTATCAAAATCTCAAGCTGCTGGTCATATTAAGTCCAGACATCGCGAAATGGCAATCGG TAAACAAGAAGCTAAGGAAGAAGCACCAGGTTTTACTGTTTATGTAAACCGAAGGCCAACAAGCATGGCGGAAGTTATCA ATGATCTTGAAGCTCAATTCACAACTGTCTGCAATGCAGCCAATGATGTCTCAGCATTGTTAGAGGCCAAGAAAGCGCAG TACTTATTGCCACCTAATGAACTTTCAGCATCGAAGTTGCTAAACCCGGTAGCTCTGTTCCGGTCAGCTTCTTCACGGTC TACTTCATCAAGATTTTTAATGAATTGTACTAGCACTATAGAGGAAGGTTGTGAGGGCACTAAAAATATCACAGAGGAAC ATTGTATGGTTTCCGGTAGTCACCAAACCACATTGGACAGATTAAATGCATGGGAGAAGAAGCTGTATGAGGAAGTCAAG TCTGGAGAACGTGTCCGAATTGCATATGAGAAAAAATGCAAGCAGCTAAGGAACCATGAAGTAAAAGGAGATGACCCCTC TTCTGCAGATAAAACAAGAGCAGCCATTAGGGATCTAGATACCAAGATAACAGTTTCAATACACTCAGTTGAAGCTATTT GCAGGAGAATTGAAACTCTAAGGGATGAAGAGTTGCATCCCCAACTTCTTGAATTGGTGCAAGGGCTGGAAAAGATGTGG AAAGTAATGGCAGAATGTCATCAGACACAGAAGAGAACCTTAGATGAAGCTAAGGTTCTTCTAGCTGGCACTCCTTCAAA ATCACATGCCAGAAAACACTCTTCCATGTCAATGACTGATCCAAATAGACTCGCACGTTCAGCCTCGAATCTCGAATTTG AGTTAAGGAACTGGCGAAACACCTTCGAGTCTTGGATCACTTCTCAAAGATCCTATGCTCATGCACTAACCGGATGGCTT CTCCGGTGTGTGAGATCTGAGTCTAATGATGTATCGAAGCTACCATGCTCTCCGCATAGATCCAGTGGCACCCACCCTTT ATTTGGACTCTGTGTTCAGTGGTCAAGGCACCTAGACGCCATACATGAGAAGGCAGTGCTTGATGGCTTGGATTTTTTTG CAGCTGGAATGGGGTCCCTCTATGCACATCAATTGAGACAAGATTCTAGGCCAAGACAAACCAATGGGGGCATGGAAATG GTGGAGTTTGGTCAGGTGGAAGAGGAGGTAATGGCACCGGAAAAACTGGCTGAGGTTGCTATTAAGGTACTTTGTGCTGG AATGTCTGTTGCTATGAGCTCATTGGCAGAGTTTGCTTTTGATTCTGCTGAGGGATACAGTGAAGTTATTAAGCAGTGGG AGAATGTGAAATCTCAAAATACTTCTAGTGAGACATAG 

Protein sequence (LotjaGi6g1v0239600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGCSHSKLEDEESVQLCKDRKKFIKQAVEQRTRFATGHMAYIESLSRVSAALRDYIEGDEPREFSLDSVMNPPFTPVKKT GPGFIPISAKSFTPSSTIEFGVGPNSTLKVNYLRPGGNPAISVEERPQSPEMMRVESYSPMRHYGMDGFFAMQPPPGNPS IFAYSPNNRPSIPPPSPQTSQWDFFWNPFSSLDNYGYPTRSSLDQTAMDDEYRGLRQVREEEGIPDLEEDETEQEVYVRK RKVAEERTRPDMHSSKEQVIVEDVDEDEDEDDDDHDHDEHDVDDDDDDDDDEEEDEDEDEDEEEEGTNTEAEHDATGSQA HGSSSFEVSKSQAAGHIKSRHREMAIGKQEAKEEAPGFTVYVNRRPTSMAEVINDLEAQFTTVCNAANDVSALLEAKKAQ YLLPPNELSASKLLNPVALFRSASSRSTSSRFLMNCTSTIEEGCEGTKNITEEHCMVSGSHQTTLDRLNAWEKKLYEEVK SGERVRIAYEKKCKQLRNHEVKGDDPSSADKTRAAIRDLDTKITVSIHSVEAICRRIETLRDEELHPQLLELVQGLEKMW KVMAECHQTQKRTLDEAKVLLAGTPSKSHARKHSSMSMTDPNRLARSASNLEFELRNWRNTFESWITSQRSYAHALTGWL LRCVRSESNDVSKLPCSPHRSSGTHPLFGLCVQWSRHLDAIHEKAVLDGLDFFAAGMGSLYAHQLRQDSRPRQTNGGMEM VEFGQVEEEVMAPEKLAEVAIKVLCAGMSVAMSSLAEFAFDSAEGYSEVIKQWENVKSQNTSSET 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam 1 59 59 3.1E-25
PANTHER 1 287 287 0.0
PANTHER 1 287 287 0.0
MobiDBLite 245 354 110 -
MobiDBLite 245 260 16 -
MobiDBLite 261 309 49 -
PANTHER 283 783 501 0.0
PANTHER 283 783 501 0.0
MobiDBLite 312 332 21 -
MobiDBLite 334 350 17 -
Pfam 369 697 329 1.5E-101

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0239600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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