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LotjaGi6g1v0240400.1

Overview

Field Value
Gene ID LotjaGi6g1v0240400
Transcript ID LotjaGi6g1v0240400.1
Lotus japonicus genome version Gifu v1.2
Description Fe/S biogenesis protein nfuA; TAIR: AT4G25910.1 NFU domain protein 3; Swiss-Prot: sp|Q84RQ7|NIFU3_ARATH NifU-like protein 3, chloroplastic; TrEMBL-Plants: tr|I1MGZ6|I1MGZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0240400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:55203629..55205481) extracted from Lotus japonicus Gifu genome v1.2.

CTTTATCATCATACTATAATCAATGTCAGCCAATCAAGTAACACTTGCAATATATCAGAACTGAACTTCATCCAGAAACA AAAAATGAGAAAATATTTTGTACTTAGCCAAAATTTAAGTTTCTGGAACTGGTTTTCCCACTTACACTCAGATGTTGGGT GGTGCAATCTCAGCTCCAACAACTCAAAGCCTCAATGGAACAAGAAGAATTGCAATGCTTTATCCATCTCATAAGGTACT TCTCTACATTAATGTTCTGTTGTTTAATTTTTTTCTCTTCATATTATGATCCTTTAATTTGGTAATGGGCAAGTGTAAAA TTAAATTTTGTTGAATTTCTCAAGTTTTTGCTCTTGTTTTTCTAGAACCTAGCATCAAGTACCAGAGGATTTTCATCAAA GGAGAGCTGTTTTCTCAGAGGTCACCACATCAACATAAAGCAAATTTTTGGGCTTATCTCTAGTCATGCTCCACGAAGCA AAGCAGGTGCTACTGAATTGTCAAATTCATCAATTTGAATTTAATTTTATTGATTGCTAATTACCACTCTAACATCATGT CTCATCCTTTCTTGGATGAAAAAAAGTACTAGTAACACATCAATGTTTTCCTGAAATTTGCAATATTGCATGTTTTGTGC AAATCTTGTGTGTCGATTAGTGTGAATTATTGAAATGAATGTTTAATTTGCAAAAGATAAAAGAAAGTGTAGTTAGAGAG TGTGAGCACTGAGCAATACTATTTCATAATGATATACTCTTCAGTCTTCACTATATTTCCAATTGTATATCAAAATAGCT TGGAATTTGCAAAGGATGTGAGAAATTAGTTGAATGCAGCACTCGCATTCGTAACATTTCAATATTGTTGCAGGATTTGT TGTTTCTCCAACCTGTGTCCTGCCTCTGACAGAAGAGAATGTGGAGAAGGTTTTGGATGAGGTAAGGCCTGGTTTGATGG CTGATGGAGGGAATGTCGCATTGCATGAGATAGATGGGCTTGTTGTTGTCCTCAAGCTACAAGGAGCATGTGGGTCATGT CCTAGCTCAGCTATGACACTAAAGATGGGAATCGAACTTCGCCTCCGGGATAAGATTCCAGAAATCATGGAAGTGGAGCA GGTACTAGACACCGAGACCGGTCTTGAGCTAACCGAAGAAAATGTTGAAAATGTATGTACCTTAATGCATCATTTCCATT TTCCAGCATTTCCATAGTTTAATTATTATTTATTATGTATCATCATGGCCTTTCGGATTTTATATTTGTAGATATTATCT CCAAAACAAAGACAGACATGAATCCATAAGCTTGAGAATTCATGTTACTAGAGATAGCTTGATGTTGCTTCATATAGACC CTAAATCTTATAACATTGTTTATTTTTCAGGTTCTTTCTGAAATTAGACCTTACCTTGCTGGCACTGGGGGAGGAATATT AGAGCTTGTTCAGATCAATGATTATGTTGTCAAAGTTCGGTTAGGTGGACCAGCAGCTGGGGTTACGACAGTTCGTGTTG CCTTAACACAGAAGCTGAGAGACAAGATACCTTCTATTGCGGCTGTGCAGCTAATAGACTGATCATGTAATATAAAAGCT CTTTTATATTTTGACTTTTAATATGTTACAGGATGAAATGGAACTACTCAATAGAAAAAACATGTAAAGTATTGTCGAGA AATGAAATTAAGAGCCAATTACACAGTAATATTGAATTTCATGTTTGGCTGCTTCCTTTACTTCAGAAGATTACACTCTA TCAGATGCCATGATGTACTTACAATTCCTTATATCATCTCAGTAGTCAATGTTTGGATTTGCCTATTTGTGGTAAAATAG CTTGTTTTCTGCA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0240400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGGGTGGTGCAATCTCAGCTCCAACAACTCAAAGCCTCAATGGAACAAGAAGAATTGCAATGCTTTATCCATCTCA TAAGAACCTAGCATCAAGTACCAGAGGATTTTCATCAAAGGAGAGCTGTTTTCTCAGAGGTCACCACATCAACATAAAGC AAATTTTTGGGCTTATCTCTAGTCATGCTCCACGAAGCAAAGCAGGATTTGTTGTTTCTCCAACCTGTGTCCTGCCTCTG ACAGAAGAGAATGTGGAGAAGGTTTTGGATGAGGTAAGGCCTGGTTTGATGGCTGATGGAGGGAATGTCGCATTGCATGA GATAGATGGGCTTGTTGTTGTCCTCAAGCTACAAGGAGCATGTGGGTCATGTCCTAGCTCAGCTATGACACTAAAGATGG GAATCGAACTTCGCCTCCGGGATAAGATTCCAGAAATCATGGAAGTGGAGCAGGTACTAGACACCGAGACCGGTCTTGAG CTAACCGAAGAAAATGTTGAAAATGTTCTTTCTGAAATTAGACCTTACCTTGCTGGCACTGGGGGAGGAATATTAGAGCT TGTTCAGATCAATGATTATGTTGTCAAAGTTCGGTTAGGTGGACCAGCAGCTGGGGTTACGACAGTTCGTGTTGCCTTAA CACAGAAGCTGAGAGACAAGATACCTTCTATTGCGGCTGTGCAGCTAATAGACTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0240400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLGGAISAPTTQSLNGTRRIAMLYPSHKNLASSTRGFSSKESCFLRGHHINIKQIFGLISSHAPRSKAGFVVSPTCVLPL TEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSAMTLKMGIELRLRDKIPEIMEVEQVLDTETGLE LTEENVENVLSEIRPYLAGTGGGILELVQINDYVVKVRLGGPAAGVTTVRVALTQKLRDKIPSIAAVQLID
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11178
20 231 212 2.5E-119 –
PANTHER
PTHR11178:SF25
20 231 212 2.5E-119 –
Gene3D
G3DSA:3.30.300.130
77 158 82 8.7E-33
IPR034904
SUPERFAMILY
SSF117916
82 156 75 7.41E-24
IPR034904
Pfam
PF01106
85 150 66 7.3E-25
IPR001075
Gene3D
G3DSA:3.30.300.130
159 231 73 4.0E-27
IPR034904
SUPERFAMILY
SSF117916
160 230 71 1.42E-14
IPR034904
Pfam
PF01106
166 228 63 6.7E-11
IPR001075

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of
GO:0016226
Biological process Iron-sulfur cluster assembly The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
Subterm of
GO:0051536
Molecular function Iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0240400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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