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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0240500 |
Transcript ID | LotjaGi6g1v0240500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transcription factor protein; TAIR: AT2G18969.1 transcription factor/transcription regulator; Swiss-Prot: sp|Q9SUM5|Y4318_ARATH Uncharacterized protein At4g30180; TrEMBL-Plants: tr|I3SEP1|I3SEP1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0240500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55210380..55211680) extracted from Lotus japonicus Gifu genome v1.2.
GCAAGCAAAATTTATTTGGCTAACATGACTTCCTGAAGCCTTTATAACTTGAGCTTGCTTCATCAATAACTTCACCACTC CCTAAAAGCTTATTTTTGGCACCCCATAACTGACACAAAAGCAAACACCATACTCTGTGTCTCTCCCTAACTTTCACCAC ACCACACCCCATCACTTTGCTTTGTTTTTCCCTTTATCCTTCTTCTATTCTTCTTCCTCTCTTCTTTGTCATCATCACAT TGTTTGCTTCATTTCTTGGTTATATGGAGGGTCAACCAGCCAAACGTAGACGCGTTTACTCAGTTGAACCAAACAAAGTA GTAGAAGCAGCATTTGCTAGAAACTACATGAACTATTTAGTTCCAGCTTTGATGAAGATCAAGGAAATTAATACTTGTGG TGGTGATATTCAGAATGTTGTCAAGCATGAAGTGGACATGGCAATGGTGTCCTCAGCCCAAGGCTTTGCATGGAGTAATT CTCTCAAACTCAAGCTTCAAAATCAAAGGGAGGATATTGGAGTCAATGTAAATGGAAACACTAGTATCCCTCAAAGCCCT AGTTCAGAGTCACAGGCTAAGATTTTGGTGAGTAAGTCTAAGAACAATGACATGCCAACAATGAAAAGGGATTTAATTGA TGTTGAAGATGATGATGAGGTCATTAATGGGCAGTTGAAAAGCTTAAAAAGGTTGATACCTGGAGGAGAAAATATGTGTA ATGATGAAATGGTGGTAGAACTAGAGAGCTACATAGGTTGTTTGCAAATGCAGGTGAATATTCTTCAGTACCTTGCTGAT CAGACAAGTTGATATTCATATCTGCTTTTGCTTTTTCATCAAAAAGTTACTCTTGTTTTTCCTCAAGGTAAAGCAACTAT AGTATGTTAATTTATGTTCAATGTGTTGTACTATATATCGTTTTCAATATAGTTTTTTATTGGAAAATGTTTGGTGAAGC AGGGTGTAGAAACCTATAGACCAGAGTTACAGAAGAGTAATAAGTGATGAATGTGATATATGATTTAATGTGACAATAAG TGATATGGAGAGAAAAATGTGTTTTTTTGAAGGAGGTATGTATTGTTGATGATTCATCAATCATAACCCTTTTGTTATTT TATACATTTTTCAATCCTGCTTAGAGGGAACAAAGGGTAATGAAAGCTAGCTATAGAAGGAAGCAGCTAAAGGTTCTCCA TTCAATATTGCAATGAGGGAATATTTAGATTTTTTTTCTTCTTCTAATGTGTTTGTGTACCATGTATAAGGTGGAAGATA ATGCAGTTTGGTTAATTTGGA
CDS sequence (LotjaGi6g1v0240500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTCAACCAGCCAAACGTAGACGCGTTTACTCAGTTGAACCAAACAAAGTAGTAGAAGCAGCATTTGCTAGAAA CTACATGAACTATTTAGTTCCAGCTTTGATGAAGATCAAGGAAATTAATACTTGTGGTGGTGATATTCAGAATGTTGTCA AGCATGAAGTGGACATGGCAATGGTGTCCTCAGCCCAAGGCTTTGCATGGAGTAATTCTCTCAAACTCAAGCTTCAAAAT CAAAGGGAGGATATTGGAGTCAATGTAAATGGAAACACTAGTATCCCTCAAAGCCCTAGTTCAGAGTCACAGGCTAAGAT TTTGGTGAGTAAGTCTAAGAACAATGACATGCCAACAATGAAAAGGGATTTAATTGATGTTGAAGATGATGATGAGGTCA TTAATGGGCAGTTGAAAAGCTTAAAAAGGTTGATACCTGGAGGAGAAAATATGTGTAATGATGAAATGGTGGTAGAACTA GAGAGCTACATAGGTTGTTTGCAAATGCAGGTGAATATTCTTCAGTACCTTGCTGATCAGACAAGTTGA
Protein sequence (LotjaGi6g1v0240500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGQPAKRRRVYSVEPNKVVEAAFARNYMNYLVPALMKIKEINTCGGDIQNVVKHEVDMAMVSSAQGFAWSNSLKLKLQN QREDIGVNVNGNTSIPQSPSSESQAKILVSKSKNNDMPTMKRDLIDVEDDDEVINGQLKSLKRLIPGGENMCNDEMVVEL ESYIGCLQMQVNILQYLADQTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 178 | 176 | 2.4E-59 | – | |
PANTHER | 3 | 178 | 176 | 2.4E-59 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0240500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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