Transcript — View — Lotus Base

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LotjaGi6g1v0244000.3

Overview

Field	Value
Gene ID	LotjaGi6g1v0244000
Transcript ID	LotjaGi6g1v0244000.3
Related isoforms 2	LotjaGi6g1v0244000.1 LotjaGi6g1v0244000.2
Lotus japonicus genome version	Gifu v1.2
Description	Methyltransferase-like protein 13; TAIR: AT3G17365.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|Q8N6R0\|MET13_HUMAN Methyltransferase-like protein 13; TrEMBL-Plants: tr\|I3T085\|I3T085_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0244000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:55679403..55683370) extracted from Lotus japonicus Gifu genome v1.2.

TTCCCTGTTGAGATTTGAAACAAAACAAACTTGAGACACAACATATATTCATAGTCCTCAGGAATTACAATCATAGATTG ATACATATCCAACACAAACACCAACATACAAGTTGAATTGAAGGGAAGAAGAAGACAGTGATGGCAACAGGTACCCAAGC CTACGGTGAATCATGGTACTGGGACAACCGCTACACCAACGAACCTGGTCCCTTTGATTGGTACCAAAAGTACATCACTT TGGCTCCAATCATCAACCTCTATGTCCCTCAAAACCACTCCATCCTCGTTGTCGGTTCTGGCAACTCAGGCATGTTTTGT TGATCTCTCAGATCTCTATATGCAATTCAATCACAACCCCACCTACCCATTTTGCTTTGATTCAATAAAAATAAAATTTT TATGCTTTTTATAATCTTTTTCTTTGGTTGGTTCCTATATTCCATGACCCTTTTGTGAAATGTGTGTTTGTCAATATCAA GTTTTGTGTTGTTTGCAGCTTTCAGTGAAGGGTTGGTTGATGAGGGTGGTTACTCAGATGTTGTCAATGTTGATATATCT TCTGTTGTCATTGAAGCTATGCAGAATAAATACAAAGATCGTCCTCAATTGAAGTGTATCCTTTTGATATATTCATGTTA TAATGTCATGGTTTTCATTTTGTGGGTGTAACTTGTAATTATGGAACCATGAAACTATTGATTTTTTTGGTATTATGTTA TTGAGGGAGTGAACTATCCTTAATCAATAGGCAGATGTGAAAATGGATGTCAGAGACATGAGTGCTTTTGAATCAGGATC TTTTGGTTCTGTTATTGACAAAGGTGTGCTTATTTTTCATAGATTTTGATTTCTCTATTTTGTAATAATTATAGTATCTA TTGGGCAATGAATTCTGATGATACTGTTTGATTTTTTTTTTCAGGGACTCTTGACTCTATCTTGGTGAGTGATGATGCTC ATTCAAATACTTGTATGTTTAACAAGACTTACTGTGTTACAGGTTGCTCATTGCATATATTTTGTTTGTAGTGTGGAAGT AATTCAAGACAAAATGCTACTGAGATGCTTGAGGAAGTTTGGAGGTAAAATAAAACCATGAACAGAAGTCTATAGTTATT TACGCTTCTGTTTTGTTTAGGATCTTTTTTATTCTTGATCTGTTCACCATTATTGAAGCAGTTGATGACACACTATAGGG TCCTTAAGGATAAAGGAGTCTATATTCTGGTAATTGCACTTCATTCTCTTAGTTTTACTATCAATCTGCATTGAGATTTG CTCTCCAATAAAGGAAACTTGTCTTGGAATTTCACTTGATCAGCCTTGATTACCGCAGGTGACATATGGAGCTCCGCTAT ATCGCCTGCGCTTGCTAAAGGAATCATGCTCTTGGTCAATAAAACTCCATGTGATAGGTTGGCTAAATTCTAATGTCGAT GTCAATTTGTATGCCATGTTTTATGAAGCTATTACAATTATGATGTTCTCTCATGCATATTTCCAGGTTTTTAGTTTTTG CCTGATTTCCAGTTCTGTCATTTACTTTTGGGATTAAGAAAGTCTCATATAACAAATAAGTTGGAATACACCTGAACTCC GTATTAGCAGTGCTTGTAAACTAAAATGGATTATTGTTGTGGGAATTGGGGATTGCTGAATATATGGTTCCTGCCTTGCT GGTTAGATGTATGAGGCACCATCATGTGGCTTTAGATATTATCAAATTATCCAACAGCTTAAGTTGTTAGGTGAAAACAA TATGCCAGACGATACAGATACCCATTTATCTTGTGTTCAAATTCAACTTTTTTAAAGCCACTATCTCAAAAGCTTTGATA TCATGTCATGAACTTTAGACCAACAATCCCAAAAGCTTTAGACTACTTGGTCATAGAGGTTATGATACCATGTTATAAAT CAATTATTTCAAAAGTTTAAACTATTGAGTGAAAACACATGGATAACTTTTGTATTATAGCTTTATTTAACAATATGCTA GACAATGCACAAACCTATTTACCTTGTGTTGAAATTCAACTTTTTATCAAACCACTCTCTGAGAAGCTTTGATATTATGT CATAAACTTTAGACCAAGTATCCCCAAAGCTTTAGATTACTTGGCCATAGAGGTTGTGATCAATGTTGTCAGGATCGAGA TCGTACTCAGGATCGGAAAAGGGGGGTGAAAGATTGTAGATCGTAGGATCGGGATCAGATCATAAGATCCTACTAGAAAT GCAAAAACATACTTAATTAAATAACATATATAGAAAATTCCATAAATGATGAAAATAACCTGATTCACATGAACTTAGAC TAGAAAGAGGGCTAAACAGCCGCACGCGATGATCGATGGCAGAGGTCAGGCGTGGAGGTCGATGGGGAAGAAGATGGGAA GCAGTCATGGAGTTTAAAAGTTTGAGCGGGTCTCTCTTTTGGGGCTGAAACCCAGAAGCTCATTTCCAAAACCCTGGTCC TTGAATCGGATCGGGATCTTGATCTTACTATCCTGTCCACAAAGATTGGGGTCCTGGACAGATCATGCTCCCATGAGATC CTATGTGGGGTCCAGATCGTAAAGCACCAGAAAGATCGCAAGATTGTGGGATCCTAAGATCCGGATCAGGATCTTGACAA CACTGGTTATGATACCATGTTATGTATATTTAAAATAAAGGGAAGAGCTGAATATTATTTTCCAATGTTTCAAAACAATA TACAAGGTCTAGGAGATGCGATGCTTGCTATGTTAGTTGATGGTGCAAACAAGCAAATTTTCAGTGGTAGGTGGTGGTGG CTGAGTGCGATGGACGGTGCGATTAATACACAAATCAAGATATGTATCAGCAGGAATGAAGGCTGCTGTAGGAAGCTGCA ATGAAAACAGCCTCTGGTGTCGGCAATGAAGGCGGCTAGGTTTGACACAGAAGCAGAGTCTCCCAGATTGGAGCTTTGAT AAGAAGTTCAAATAAAGGGAAGAAAACTGAATATTATTTTCTGAATCTTTCTTAACTAAACATGGTAAAAATCTGTGCAA ATCAAAATAAACCAAATATGCCCTAAAAATAAAATTATACTAGTTACAGTATATTATACAACATGAGTCCATTATCCCAA AAGTTTAAACCCTTAACTGAAGACACATGAATGGTTTTTATACTGTGGCTTTAGCAATATGTACTTTTTTTTTTTAAATG TCCCCCCTTAAAGCATCCTATTTAACTGTTCCTTTATAAATTGTTAATTTGCTACTCTTTAATTGGGTATATATGCATTT TTAGCATTCAAATTTGGATTTTTTTTATAAGCCCTCGTCAATAACAGTTGGCATGCTATATTCAGAAAAACTTGCATCAG AAGAGAAATCTGATCATCCACTTTGGGAGCTGACAAAACCTGTTCCGCTGAATGACGATGGTAGCTCTGTGGAGGAAGCC CTTGGCCGGAATGCTGATGTCCATTACATATATATATGCACTAAGGTAATCGTATGTTTTGTGGTACCTATTGCTATATG TCCTTGGTCAATAGTACATGTTATAATATACCTCTCTCTTGAATAATTAATCGTCATGTTGTCAAAATCATATGCCTAGG TGATGTTGAGTGTAGCTTTCTATACCCTTTTCCCATTTGGACTAATCATTTTTATTATGATTTTTCTGCCAGGAAAGTTC TGCTAACGAACATTAAAGCATGAGCGGGCAATTTGGCGAGGAAGGCACCCATTTTCACTCTAGAAGTTTCTGTTACTACT TACTGTAGTTGATCCTAGCATCCGTAATGGTAAATCCAAAGTTAATGAGCTTAATTTTCTTTGCAACACAATGTATTATG ATATTCTGAACGTTTGTGTGATCTAAAGACAGTAACATTTCTTCAATTTTTAATTTGATTGATTCCAAGAGTTGTCTGTT AACTCCGCCATTTTCTGCCATTTATAATGTCACAATATATTTTCTTCA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0244000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGAATAAATACAAAGATCGTCCTCAATTGAAGTATGTGAAAATGGATGTCAGAGACATGAGTGCTTTTGAATCAGG ATCTTTTGGTTCTGTTATTGACAAAGGGACTCTTGACTCTATCTTGTGTGGAAGTAATTCAAGACAAAATGCTACTGAGA TGCTTGAGGAAGTTTGGAGGGTCCTTAAGGATAAAGGAGTCTATATTCTGGTGACATATGGAGCTCCGCTATATCGCCTG CGCTTGCTAAAGGAATCATGCTCTTGGTCAATAAAACTCCATGTGATAGAAAAACTTGCATCAGAAGAGAAATCTGATCA TCCACTTTGGGAGCTGACAAAACCTGTTCCGCTGAATGACGATGGTAGCTCTGTGGAGGAAGCCCTTGGCCGGAATGCTG ATGTCCATTACATATATATATGCACTAAGGAAAGTTCTGCTAACGAACATTAA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0244000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQNKYKDRPQLKYVKMDVRDMSAFESGSFGSVIDKGTLDSILCGSNSRQNATEMLEEVWRVLKDKGVYILVTYGAPLYRL RLLKESCSWSIKLHVIEKLASEEKSDHPLWELTKPVPLNDDGSSVEEALGRNADVHYIYICTKESSANEH

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12176:SF14 View details on PTHR12176:SF14 Search for proteins/transripts with this domain View external data on PTHR12176:SF14	1	146	146	2.0E-51	–
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	1	149	149	1.1E-23	–
PANTHER	PTHR12176 View details on PTHR12176 Search for proteins/transripts with this domain View external data on PTHR12176	1	146	146	2.0E-51	–
Pfam	PF08241 View details on PF08241 Search for proteins/transripts with this domain View external data on PF08241	4	69	66	8.7E-6	IPR013216 Show description in modal box View details on IPR013216 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	9	80	72	1.67E-9	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008168 View details of GO:0008168 AmiGO InterPro QuickGO	Molecular function	Methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.	Subterm of View details of GO:0016741

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0244000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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