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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0246700 |
| Transcript ID | LotjaGi6g1v0246700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transaldolase; TAIR: AT4G20190.1 hypothetical protein; Swiss-Prot: sp|Q2NS86|TAL_SODGM Transaldolase; TrEMBL-Plants: tr|A0A151S5N9|A0A151S5N9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0246700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55911212..55913882) extracted from Lotus japonicus Gifu genome v1.2.
CTGGAATAGTCGGTATCCAAATGTGACAACAACGGGTGATTTACAACAAAATATAAAAAATCCTCAATGTTCTCAATCAG ATCATACCTACGGAAAAAACATATGATAAAATAAACCATAGTGGACATAGAACATGGTCTTCACGACTAAGATGTGCTAC ACATTTTCCTTACATTGTATGCCACTTCTTTATAAGTAGTGAGCAACTCTTGGAGTTCCACAAGTCTATGTCTTGATTCT GATACACAAATCTCTATCATAAAAAACCATGTCTAATTCCCTGCAAGAACTACACAAAATCATGGAACAAGGTGATTTTT CTACATGGATGTTGGACATGGACTACCCCATCATCTCAATCATGGAGAGCTTCCAAAAAGAAAAGCAGATCATGGTGGAT CCACTTTCCTTGAAAGATTCTCATTCTCCTACCAAACATCTCATGCTTCCAACTGTAATCACAAATTCTGGAACCGCCGC CACCCTTTTCCACCCTCCACCACTTCAACCTCCAACGGAAAGATTTTTAAGCCTGAGTCTTCCAAATTCAGCAAACTCAT CCCCGCGGTTCGGTTCGGCTCTTTCCAAGAAGAAATCAAAAAGTGGGAGTCCTGAACCAAAATGTGAAGCTAGTAAGTTT GATAACAAGCTTCAGGATCTGCTTCATGAAGTCCATTTAGGTAAGAGCAAGTCATGTGGTGAAGCAAGATCATTGACACC CTTTGAAGAATTTGTATCATTTGATCACTGGTTGTCAAAAACAAGTGCAGTGGAGCAAGTTAAATTGCACCATGATGGCA AAATCTCCAAAACTGAAGCTGTTAAAGAAAGTCCAAAGAGTAATAAGAGCATTAAGCACATGAAAACACCAGAGAATGAT GGATTGAAATGCAGTGCTCTTTGCCTCTATCTACCAGGCTTTGGTGGTAGTAAAGTGAAGCCAGTTAAAACAAGAAAGGA AGGGTCAAAAAGGGAAGCTGTGATGTCTAGGACAGTTTCCTTGGAGAATTTTGAATGTGGTTCTTGGGCTTCTGCAGCAA TGTTCCATGAGATTGAAGGAGACTCGGTTAATAATTACTACTTTGATCTGCCAATTGAACTGATGAAACACAACAGTGCC AGTGAAGAATGTTCTCCTGTTAAAGGGGTCCTGAAGAATAGTTCTTCAAGAGGCAGTGCTAGAAAATCAGACACATCATC GCCTCGCCACCACGTTCGGTTTACTACATCATCTTCTTCTGGATCATACCCTGCCTCTCCAGCATCTTGCATCACTCCTC GTTTGCGAAAAGCGAGGGATGATTTTAATTCCTTTTTAGCAGCAGCACAAAGTGCATGAGAGTGATGGAGATTGAACCTA TGGAAATATGTTGAATTTAGACTTAATATGTATTCAAAAACTTCATTTGTAGCTGGTTATGTTACCTTAGTATTCACCTG CCTGCATAATGTTTTGCAAGAGCTAGTCTATTTACCATGTTTAAACTGTATTCAAGTTAGTAATCTGGTTATCTGAAGTC TGTAATCTCAAACTAGAGACAACTTATTTTTGCACACATTTGGGTTACAGAAGCAATATGAGGAATCAAAGTGGTACCTT TTTATATTTTGTCCTGATTGTTTTATATAATTTTTATACACCAATAAAACAGAAAATCTCTTCCACTATCAGTCAAAATT GTATTTCATTATTTGTATAAAGTATGAAAAGCAGGGAGAGTTGCAGTTTAGGAACCACAAAGAAACTTATTTACAATGAT GAATACAATCAATGAGCAACTTGAATTGATTTTCACTGAATGCTACCTTTAAACAAAATGTCAAAACAACTTCCCCACTT CAGATTCATAAGGCCCAAATACAAAAGTTATCACTCTTAGGGGAAGTGACCTTATTAGATGCAAGCAGAATACCATCTGA AAGAAGCCTGAAAGGTAAAGGGTGGTTTTGTAGCTATTTTTTGCTTACCAACAAATTCTAACAAAAAGGCAAACTTTAGG TTAGTTGATAACCAAACACTGTGATCTAAACTGATTTGAAATTTGATCAACAGAATAAATATGGTAAGTCACAAATTGAC CATGCAAAGGATATTAATGCCAACTGTTCTATCCGTAAGTCTGTATCATGAAGTTAGTCTTATTGTCATGCAATTTTTCA CAAGCCTGAGAAAGCAATCAATGATCAGATAGCATTGATATTCTATACATGCGGCGGAATGATACTAATAAAGCATTATT AAGGTCTTACTAGGGAGCCTGAATCTACACTACCAGCTTTCTTCCTATTCAATTTCTGCTTCGCCGGATAGCAGGACAGA GAGCCTAAGGGATAGAGAAGAAAAGACTATAATAAACAGAATGTTTGTTAGTATACACAGAAAACTTCAGCCGAGTGCTG ATTGTAAAGATACATCTGCTTCAGGTACATGTTTATGAAATAATTAGCTTGGCTTCATCCCTCTATGTAGTTGCCACTAG CCTCTGGAATCAATTCTCATATGGCTGCAAATATAAATCTTTCCCATTTTTGGGCAGAAATATAAGTTTAGGAGGTAGAT AAGTTGTTCCACCAAGGCAAGGTGCACCACAATTAGAGGGGTGCCTAACTGCCTACTAGTGAAGGATGACTGATCAACAA TTCAACAGCAATAACAGAATCCAAGACCTTT
CDS sequence (LotjaGi6g1v0246700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAATTCCCTGCAAGAACTACACAAAATCATGGAACAAGGTGATTTTTCTACATGGATGTTGGACATGGACTACCC CATCATCTCAATCATGGAGAGCTTCCAAAAAGAAAAGCAGATCATGGTGGATCCACTTTCCTTGAAAGATTCTCATTCTC CTACCAAACATCTCATGCTTCCAACTGTAATCACAAATTCTGGAACCGCCGCCACCCTTTTCCACCCTCCACCACTTCAA CCTCCAACGGAAAGATTTTTAAGCCTGAGTCTTCCAAATTCAGCAAACTCATCCCCGCGGTTCGGTTCGGCTCTTTCCAA GAAGAAATCAAAAAGTGGGAGTCCTGAACCAAAATGTGAAGCTAGTAAGTTTGATAACAAGCTTCAGGATCTGCTTCATG AAGTCCATTTAGGTAAGAGCAAGTCATGTGGTGAAGCAAGATCATTGACACCCTTTGAAGAATTTGTATCATTTGATCAC TGGTTGTCAAAAACAAGTGCAGTGGAGCAAGTTAAATTGCACCATGATGGCAAAATCTCCAAAACTGAAGCTGTTAAAGA AAGTCCAAAGAGTAATAAGAGCATTAAGCACATGAAAACACCAGAGAATGATGGATTGAAATGCAGTGCTCTTTGCCTCT ATCTACCAGGCTTTGGTGGTAGTAAAGTGAAGCCAGTTAAAACAAGAAAGGAAGGGTCAAAAAGGGAAGCTGTGATGTCT AGGACAGTTTCCTTGGAGAATTTTGAATGTGGTTCTTGGGCTTCTGCAGCAATGTTCCATGAGATTGAAGGAGACTCGGT TAATAATTACTACTTTGATCTGCCAATTGAACTGATGAAACACAACAGTGCCAGTGAAGAATGTTCTCCTGTTAAAGGGG TCCTGAAGAATAGTTCTTCAAGAGGCAGTGCTAGAAAATCAGACACATCATCGCCTCGCCACCACGTTCGGTTTACTACA TCATCTTCTTCTGGATCATACCCTGCCTCTCCAGCATCTTGCATCACTCCTCGTTTGCGAAAAGCGAGGGATGATTTTAA TTCCTTTTTAGCAGCAGCACAAAGTGCATGA
Protein sequence (LotjaGi6g1v0246700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNSLQELHKIMEQGDFSTWMLDMDYPIISIMESFQKEKQIMVDPLSLKDSHSPTKHLMLPTVITNSGTAATLFHPPPLQ PPTERFLSLSLPNSANSSPRFGSALSKKKSKSGSPEPKCEASKFDNKLQDLLHEVHLGKSKSCGEARSLTPFEEFVSFDH WLSKTSAVEQVKLHHDGKISKTEAVKESPKSNKSIKHMKTPENDGLKCSALCLYLPGFGGSKVKPVKTRKEGSKREAVMS RTVSLENFECGSWASAAMFHEIEGDSVNNYYFDLPIELMKHNSASEECSPVKGVLKNSSSRGSARKSDTSSPRHHVRFTT SSSSGSYPASPASCITPRLRKARDDFNSFLAAAQSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 355 | 325 | 5.5E-83 | – | |
| PANTHER | 31 | 355 | 325 | 5.5E-83 | ||
| MobiDBLite | 98 | 121 | 24 | - | – | |
| MobiDBLite | 289 | 334 | 46 | - | – | |
| MobiDBLite | 292 | 306 | 15 | - | – | |
| MobiDBLite | 314 | 331 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chloroplast thylakoid membrane | The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. | ||
| Biological process | Photosystem I assembly | The aggregation, arrangement and bonding together of a set of components to form a photosystem I complex on the thylakoid membrane. | ||
| Biological process | Response to photooxidative stress | Any process that results in a change in state or activity of a cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as the result of a photooxidative stress, the light-dependent generation of active oxygen species. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. |
Expression pattern of LotjaGi6g1v0246700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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