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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0252000 |
| Transcript ID | LotjaGi6g1v0252000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Condensin-2 complex subunit H2; TAIR: AT3G16730.1 condensin-2 complex subunit H2-like protein; Swiss-Prot: sp|Q9LUR0|CNDH2_ARATH Condensin-2 complex subunit H2; TrEMBL-Plants: tr|I1L0X2|I1L0X2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0252000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56412713..56419325) extracted from Lotus japonicus Gifu genome v1.2.
CAAGAAACTCCTTTTTTTGTCAATAAACTACCTCAACATTCAATTCCAAGTCAATAAGTTTAATTGGTGGGTATGGCCCA GATCTCAAGGCCCAATTACATGAAATTTGGGACTGAAGAACGAGCGGGAAAAAACATATCGAAAACATCTTGAACCTCTC TCGTCTGAGCCCCTTTCGTTTTGGTTTGTTGCCATAGCTCATCATCCTCATCTCTCTGAACTCCACACAAGCTTGGATTT TGCCACCAACCCACCTCGTTATTCCTGGGGAATTTCAAAACCCTGCAATTTTTTTCTTCTGGGTTCCCAATCCCTCACCA CAACACTGAAACCCTAGGGTTTTCTCTGTGTGTGTTTGGTTGCCGGAAATTGCCGAAATTACTATGATTTGTGCAGCAAT TCTGGCCAACGAAGATGACTAGAGACAATCCGGAACCAGCAGGTGGAGGATTCCACACGGTTCACGCCGAGCGGGACCTT CAATCCAATTGGGAAGTTGACCTCGCCAAGAAACTTGAGGATTATCTGCTGAAAATCTGCTCCGGCGAGATCACCGGCGA AGAAGAAGGTCACATTCCTGTGAATTTCGCTGAAGGTTGGTCGCCTGACTCATTTTCTGTTCAAAAATTTCAATTTTTAT TTGCAATTACCAATTTTTTTTGTGTGGTGTGACTCTCTGATCAACTGAATTGGCTGTTTCTGGGTAATTGTAGCTGCTCT TCTGCTTCAGGGTTCCATTCAGGTGTATAGTCGAAAGGTGGAATATCTCTACAGCTTGGTACTAAAGGCTTTGGAGTTTC TCTCTCAGAAAAGGTTTGATTTTTGAGTTGAAGTTTCGCCATTTATTTGCATTCTGTTATGTTATCTGCAAATCCCTGTC CCTCTCTTGTTGTTCTCACTGTTTTTGGGGGTGGGGGTGGGGGGTTGACTGTTAGAGTAGGCGTGCGAAACCCCATTTTT CTTATCCGAACAACATGGCATTGCTGCGAAAAGAAGGCAATATAATTACCTGATATATATAGTTTTCGGACCAGGGTTTT AAATTTCCGTTGTGGCCGTTGAGATTGCGGCCGCTGCGATTTATGGTATTGTAATTTCGTTTTGAACTTTTTATCATTCC TATTGCCTTCCATAATTATTTTATCTTAATTTTTTTCTCCATTTCTCTCCAATTGTACATTATATCTCATTCCCTCTAGT TAATTTATCTCAAATTTTTTCTTATTCCCTCCCAATTTTTTTGTAGTCGGCATTTGTCTTTGCGTTTTTTACACGATGTG ACTACTAGGGCCATCTAGTATGGGCTTAGTTAGCGTCCAATTTTCCATCAAACCCAAAGACGAAAGTCTCTCCTCTCACA CGGCCAAAAGCCCAGTTTCATTTCATTTTCATAATTTCACCAACTTTACCCGACTAACAAACCCTAACGGCCTCACCCTG TCAGTCAGTACTCAGTCACCTTTAACAAGACCCTCATGGCCTCTGCTACTGGTTCACAGACTTGCAGCGTAGTGCGGTAG TCCTAGCTGAGCGCCTGAGCCATCTACCAAAAGACCCACACATAGCGGCAGCGCGGCCAATTTGAAAGAAAGAAAAAGAA GCACGATTGATTCGATCCGTCAGAGAGCTTACCGAAATATTAAGATTGGAGAAGTCTAAGTGAGCAGCATAGAAACATGA CTACAGAGATTCAAAATGGGTGGATTGGTTCTCTGATTCTCGTAAACACCAACTGAATCCTTTCTTTTCTTCATTCATAA CGCCGTTGTGTCCATTGGAATACCGCTGCGATCATCAGAACGGTCGTTGCAGCCATTAAACCGTTGTGTTGCAGTTGAAA TGTGGTTTCGTAACAGCCGTTTTGGGTGATTTTTACTCACACTGCAATGGAGATCCGTGACAGTAGCGGTGCCTTCCGCA ACCGCAATATTGCGGCCGCATCAGCTGATGTGAACTGCATTTTAGAACCCTGCTTCAGACTTTACCTACTCAATTACATG AAAAAAAATGAATATAGCATCAAGTGAGTAAGGTGTTTAGTGCTTTTATGGCTGCATTTATTGACATTGTCAATTTCAGA GTTGGAAATAATTTGTTGGGATCTTTTCTGATGAATTGGTTGGAAATAAATGGTAAATTTAAAATGCAAAGCTTTGCTGA TGTTGTCCAGTCTTGCTTTTGGAATAATAGTTTATAATTCCTATTTGTTTCGCTTTGAATTGTGTGAGTAAAAGTATTGT ATGAGAATGGGAATGCACTTAAGACCTCTGTGTAGTCTGAAACAGCTAATATGCCATATGTGATAAACATAGTTGAAATT TGCATCTGTAATATCTAGTAACAGTGGCCTAGGATCTAGATCTCATACTATTTATTACATGAAGTTTCTCAAGTATTCTA ACATTTTTTAAGGGACAATGATTGTACATGGCACGGATTAGTGTTTTCATGACTAGTATGTTTCTTGTAAACATAATGTC AAGTGAAATCACCTTTTTCGTTACGGTTACTGTCACCATCAAATGTAAAGTGTCAAGTGTGAAATCTACATGTACTAGTT CAGTTCTTAGAATATTCTACAGTCTATTAACATTGTATCAGAATCTTTGCTCTGCTTGCAGTTGTCACTCACTCTTGTTT CTAGTTGCTTAATCTCAGCTTGCTCTCTAGTATCATACCTAGTTTACCTTAAAACATAATTGATTTTATTTCATAAATTG TGACTCTCTGTCCATGAGAGTGACTTTAAATAATCTGCTGACTTTTTATTTCAGTTTATTCAAACTTTATGTTATGATGT ACAGCAATGTTTAATCTGACTGATGTTTCTTGTGCAGACAGCAGGAGCATGTAGATGGGACATCAGCCCAACCTGAAGAG AGTGGTCCCTCTGCTGTTGCTGATGAAGAAAATGATGAATTCTGGGGCTTAGATGACATCCCAGGTAACCTATTTAAGCG ACAATATGACTAAATGGCCAAACAAGAACCATTACATTTTTTCAGTGTTAACCAAGGAATCCTCACAGCCCAAACAAGAA CCATTACATAAGGGGAGTTATTGTTATCATGATTAGATTTATTTAGAATTTTTTGTTTACCATTATAGGTTTGATCTATA CTGGGGGGTGTATTATATGAAAATCTTCTTTAGTTGGTAAGGTCGATTAAGCTTATTTTAATTAAATTTGGTAATCATGG TTCTGTTAGATTCTCATTGCATAGGCCTCTAGAACAAGACCAGAGATTTATTGAGAATATCTCAGATTCTAGGCTTCTCC CTTCAAGTCTTCTTTTTCTACATTCACTTTTTGATCAATTGCATGTAAACAGCTTTCTTCTGACATGCTTGTTGCTTTGT TTGACTATGAAGGGGTGCAATTGATAGATTACTTAATAACTTCTATTATATTGCAGTTGAGGAAAAGAATTCCTTGGATG CTTCAACAGGCAAAGAAGTGAACTTGGATCAATTTATAAAACCCCCTGCAAATCTAGTTGTTCTTGAAGGTGACTGCTTG GATGCTGTTGGTGATGGAGGAGAATTGGAGTCTTATCTGGTATCTTTATTTCTTGCAGCAGTTAACATAATGGTGTTTGT TTAATTTTATTCACTAATGTTCTTATGAATTTTTGCAGTTGTCCACCACTGACTTGTACCAGGATTTCATTTTATTGGAC TCATCTGATGCTGTTGCAGTTGATGAGTTTCTGAAGGGTAGAAAAGCTGTTATGACACAAAATGGTACAAGTAGAGGATT CTCAAATCGTAAAAGCTTTCTATCTCCAAGACGTACTGGGGGAAGTGCTCATAGAGCATCAGCTGCAAAGAGTCCGCGTG CTAATTCCAACTGCTCTCCTAAAAATTTAAATTTTGATGACAACAATGCTGGCCCCAGTTCTCCTGTTTCTGCTGGTCTT GATAACTGTGACTTCGGATTTAATATGAATGACGGATTTGATACTTCGAGGGATTCAGACAATTCAGATGCAGATGGTGA TGACCCATGGAAACCTTTGAATCCCCATGAACCAGGAAACTTGAGAGTGAAGCCCTTTAGAAAAGGTAACCTTTACCCCT TTTCTATCCTTCATCAACTCACTTTACGTCAGTTCTATATAACTTACCTATTTTATTTCTTCTTTTTGATGCAACTGCAG TGAAAGCTTTAAGAAAGACTGCCATCAATGTGACGCGTCCAATATCTACTAGCACTTTGTTTCCACCAGCAAAATTGCAT GGTCCTGTCAGCCCAGAGCTCATGGAATTGTGGGAGATGCGACATCCTGCCCATGAACGAGAAAAAGAATCTCAACCTCC TCCACCCTTATATGAGAAGGTACTTTTTAATGGTTTCTCTGTTTACTAGTGCATAACTTTTTATTGTTCATACGTAATGA TATGTGATGTAAATTACAGCTGAGGCAATCTCTTATTAATGAGGAGAATGAAACTGGTGGAATTTTTTTTAACTCTGAAG CAGACAATGATGACAACGAATACGATAGTGGAAATCCTGATTTTGATATGCCTGGCAGTGCCTTCATGGATGAAGATCTA CCTCCTGGCAATAACGAGGTCAGGATAGAAGACCAGGAATTTGGCTGTTTATATATTCTGGTTGAAATCTTGAAAACTTG TAATATTTGCTTATGAGCTTATCTACTTGATTTAACAGCATGGAGTTGACGATGCTCATGTCAATGTTGATGAAGAATTT CCAAATTCTCAAACAAGTATGGAAGATCTTTGCCGCTCTCACCTGGTAAGAGTGCCATTCTTTGACTTTTGGGTGTAGAT ATGGTTATTGATCACCTGTAGAAGTCTGCTATCGAGTCTTCCGTGTTCCCCTTCTTTCCTGTATTTGTAGTTTATCTTAC TGAACCCCTAAATTTACGGAGAGAAATATGTCATGTAAAGCATAGGCTCATGGTTTTTTTTGGAGAAGAGAACAAATGAT AATTCACTTAAATAAACAAAAAGTATATTAACTCCATCCTTTATTTCGACATAATAGTTTCAAGGTTTAAATATTCTTTT CGTCCTTGAACTATAGCGAAATTTTGGTTTCCGTCCCTCAATTAAATTTTGCTATAGTTCAGAGACGAATAGAATATTTA ACCCTAGTTTCAAAGAACTTGTAAGTTAGGGTTGTAGCCTTGTAGGTCAATTTGGACTATTTGATTTTCTTGCAATAGCA TATCTTTTGCTAAAACGGTTCCTCACTGTTGTATGGTTGGTAACTGTTGTTCCTCATCCAGAATGCTCTCCTAGCTAGCA TAGCTGAAAATGAGAAGCAAACTGAAATGGCTGCTAGGGTTTCAACGTGGAAACAAAGAATTGAGCACAACTTAGAAGAA CAGGTGAATTCATCTTTGGAGTGTCTTTCCTCTCTCTCTCTCTCTCTCTCAGTGCTCTATATTGAATGGGCTGTTTTTGC ATGACAGGATTCACACCCACCATTTGATATCCAAGACTATGGTGCAAAAATCCTTGACAAACTATCCCTTGAATCAAGCA GTGGCGGAGGTGTCCTGTCCTTTTCTGATTTGGTAAAGGGTCAAGAAAAGTATGATGTATCCAGAAGTTTTTCTGCACTT CTTCAACTGGTAATTCCCTCATTAGCAATGTTTAGTTTTCTTCTTAAACATAAAACATGTACTTCATTTTTTTTTATGTT GGATTATCCTTGAATTATTATTTCAACATGACATGTGAGTCTTACAAATTTCCAGGTAAACAATCGAGACGTAGATCTAG AAAGAAATGGATTTGAAGGGGGTTCTGTTTGCTACACCACTGATAATCCATTTCATGTTAAGCTCCTTGAGAATGATAAG AACCGGGAGAACAAGCAGCCGCCGCTGTTGTCAAAAAAGAGACAGAAGTCTCCAACGAAAAAACCACCTACAAAAGGCGG TGATGCGAACAAAACCAGAAGAGATAAGTCTCCCTCCGCGAGTTCAGGTTCTAGGAAATCTGGATCATCAGGGGTGTCGG CACCTGGAAATTGTAAGTTCTCTGTGAAGCTTGGAAAGGTGAGTAGTGGCATAAGGCTCTCCCCTGAATCTAAGAGAAGG CGTAGATCTCAGTATGCGGAACCAGTTAACTCATCTTCAGCAGGTTGATGGGATGGTTCAATTCAAGACATTTGCTTGAT GTCATAGACTTAGTTGTGAAGTAAATTACAAACCTAGTTTTCATTAGATACTAACATCCATTAGTTTTCACCTGTATCAT TATTGGTTTTGGCGACATTAACATATTGATGTAATAATTTCGCCTTGTACAAGATGCATTCTTAGCAATGTAATACCTTT TGTCATACTTTGGGCGATGCGTATGGAGAATGATTTGTTGGGAGAGATATACCCACATAATGTCATCTCCGAGTCTCGAG AGGATTAGTTTTATAGTTGTCGGTTGTGGGGATACATTGTTAAACCAATGTAATGCCCATCACCTTGTAACATACATATT TATCCCAATTACTGCTTATGGATCATCATAGATTATTTTTGGTAACGTTTTACATGGTTTTGTTGAAATTCTTTTAGTTG CATCACATCTTTGGTCCATCACATTATTATGTTGGTCCAATATTCTCTAACCC
CDS sequence (LotjaGi6g1v0252000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAGAGACAATCCGGAACCAGCAGGTGGAGGATTCCACACGGTTCACGCCGAGCGGGACCTTCAATCCAATTGGGA AGTTGACCTCGCCAAGAAACTTGAGGATTATCTGCTGAAAATCTGCTCCGGCGAGATCACCGGCGAAGAAGAAGGTCACA TTCCTGTGAATTTCGCTGAAGCTGCTCTTCTGCTTCAGGGTTCCATTCAGGTGTATAGTCGAAAGGTGGAATATCTCTAC AGCTTGGTACTAAAGGCTTTGGAGTTTCTCTCTCAGAAAAGACAGCAGGAGCATGTAGATGGGACATCAGCCCAACCTGA AGAGAGTGGTCCCTCTGCTGTTGCTGATGAAGAAAATGATGAATTCTGGGGCTTAGATGACATCCCAGTTGAGGAAAAGA ATTCCTTGGATGCTTCAACAGGCAAAGAAGTGAACTTGGATCAATTTATAAAACCCCCTGCAAATCTAGTTGTTCTTGAA GGTGACTGCTTGGATGCTGTTGGTGATGGAGGAGAATTGGAGTCTTATCTGTTGTCCACCACTGACTTGTACCAGGATTT CATTTTATTGGACTCATCTGATGCTGTTGCAGTTGATGAGTTTCTGAAGGGTAGAAAAGCTGTTATGACACAAAATGGTA CAAGTAGAGGATTCTCAAATCGTAAAAGCTTTCTATCTCCAAGACGTACTGGGGGAAGTGCTCATAGAGCATCAGCTGCA AAGAGTCCGCGTGCTAATTCCAACTGCTCTCCTAAAAATTTAAATTTTGATGACAACAATGCTGGCCCCAGTTCTCCTGT TTCTGCTGGTCTTGATAACTGTGACTTCGGATTTAATATGAATGACGGATTTGATACTTCGAGGGATTCAGACAATTCAG ATGCAGATGGTGATGACCCATGGAAACCTTTGAATCCCCATGAACCAGGAAACTTGAGAGTGAAGCCCTTTAGAAAAGTG AAAGCTTTAAGAAAGACTGCCATCAATGTGACGCGTCCAATATCTACTAGCACTTTGTTTCCACCAGCAAAATTGCATGG TCCTGTCAGCCCAGAGCTCATGGAATTGTGGGAGATGCGACATCCTGCCCATGAACGAGAAAAAGAATCTCAACCTCCTC CACCCTTATATGAGAAGCTGAGGCAATCTCTTATTAATGAGGAGAATGAAACTGGTGGAATTTTTTTTAACTCTGAAGCA GACAATGATGACAACGAATACGATAGTGGAAATCCTGATTTTGATATGCCTGGCAGTGCCTTCATGGATGAAGATCTACC TCCTGGCAATAACGAGCATGGAGTTGACGATGCTCATGTCAATGTTGATGAAGAATTTCCAAATTCTCAAACAAGTATGG AAGATCTTTGCCGCTCTCACCTGAATGCTCTCCTAGCTAGCATAGCTGAAAATGAGAAGCAAACTGAAATGGCTGCTAGG GTTTCAACGTGGAAACAAAGAATTGAGCACAACTTAGAAGAACAGGATTCACACCCACCATTTGATATCCAAGACTATGG TGCAAAAATCCTTGACAAACTATCCCTTGAATCAAGCAGTGGCGGAGGTGTCCTGTCCTTTTCTGATTTGGTAAAGGGTC AAGAAAAGTATGATGTATCCAGAAGTTTTTCTGCACTTCTTCAACTGGTAAACAATCGAGACGTAGATCTAGAAAGAAAT GGATTTGAAGGGGGTTCTGTTTGCTACACCACTGATAATCCATTTCATGTTAAGCTCCTTGAGAATGATAAGAACCGGGA GAACAAGCAGCCGCCGCTGTTGTCAAAAAAGAGACAGAAGTCTCCAACGAAAAAACCACCTACAAAAGGCGGTGATGCGA ACAAAACCAGAAGAGATAAGTCTCCCTCCGCGAGTTCAGGTTCTAGGAAATCTGGATCATCAGGGGTGTCGGCACCTGGA AATTGTAAGTTCTCTGTGAAGCTTGGAAAGGTGAGTAGTGGCATAAGGCTCTCCCCTGAATCTAAGAGAAGGCGTAGATC TCAGTATGCGGAACCAGTTAACTCATCTTCAGCAGGTTGA
Protein sequence (LotjaGi6g1v0252000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRDNPEPAGGGFHTVHAERDLQSNWEVDLAKKLEDYLLKICSGEITGEEEGHIPVNFAEAALLLQGSIQVYSRKVEYLY SLVLKALEFLSQKRQQEHVDGTSAQPEESGPSAVADEENDEFWGLDDIPVEEKNSLDASTGKEVNLDQFIKPPANLVVLE GDCLDAVGDGGELESYLLSTTDLYQDFILLDSSDAVAVDEFLKGRKAVMTQNGTSRGFSNRKSFLSPRRTGGSAHRASAA KSPRANSNCSPKNLNFDDNNAGPSSPVSAGLDNCDFGFNMNDGFDTSRDSDNSDADGDDPWKPLNPHEPGNLRVKPFRKV KALRKTAINVTRPISTSTLFPPAKLHGPVSPELMELWEMRHPAHEREKESQPPPPLYEKLRQSLINEENETGGIFFNSEA DNDDNEYDSGNPDFDMPGSAFMDEDLPPGNNEHGVDDAHVNVDEEFPNSQTSMEDLCRSHLNALLASIAENEKQTEMAAR VSTWKQRIEHNLEEQDSHPPFDIQDYGAKILDKLSLESSSGGGVLSFSDLVKGQEKYDVSRSFSALLQLVNNRDVDLERN GFEGGSVCYTTDNPFHVKLLENDKNRENKQPPLLSKKRQKSPTKKPPTKGGDANKTRRDKSPSASSGSRKSGSSGVSAPG NCKFSVKLGKVSSGIRLSPESKRRRRSQYAEPVNSSSAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 606 | 595 | 3.2E-219 | ||
| Pfam | 16 | 127 | 112 | 1.3E-38 | ||
| MobiDBLite | 97 | 116 | 20 | - | – | |
| Pfam | 151 | 266 | 116 | 4.8E-21 | ||
| MobiDBLite | 212 | 227 | 16 | - | – | |
| MobiDBLite | 212 | 268 | 57 | - | – | |
| MobiDBLite | 240 | 267 | 28 | - | – | |
| MobiDBLite | 282 | 312 | 31 | - | – | |
| MobiDBLite | 287 | 303 | 17 | - | – | |
| Pfam | 300 | 588 | 289 | 6.0E-57 | ||
| MobiDBLite | 581 | 679 | 99 | - | – | |
| MobiDBLite | 610 | 624 | 15 | - | – | |
| MobiDBLite | 625 | 640 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Chromosome condensation | The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells. |
Expression pattern of LotjaGi6g1v0252000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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