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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0252400 |
| Transcript ID | LotjaGi6g1v0252400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT5G27550.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4; TrEMBL-Plants: tr|A0A0B2RIM3|A0A0B2RIM3_GLYSO Ubiquitin carboxyl-terminal hydrolase 12; Found in the gene: LotjaGi6g1v0252400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56481241..56483360) extracted from Lotus japonicus Gifu genome v1.2.
GTAGAGAAATTCACATGGACGATTAACAACTTCTCTAAATTTGCCGACTCAGAAGAAGAGCTATGCTCTGAGACTTTCTA CATCGGTGGCCATCCATTATGGTGAGTGAATGGATTCTTGATTTACTATACAAGCATCTCATATAATATTCTTTGTAATG ATTTTAATTTGGGCAACTTCTTGTATGTTTTTGGACTTTGCTTGTAGGCAGGTTATTCTGTATCCAAAGGGGAACGATAG TGATGACTGCTTGTCACTTTATTTGTATGCTGGGGATCTCTCTATTTTTCCTAATGACTGGAGCATATTTGCAAATTTCA ACTTGGCCCTTATTAATCAAGTTTATAGCCAAAAGACGATAACAAAAGGTATTGTTTGTACTTTTCTCCCTTTTTTTGCA ATTTGTTAGTATTTCGTTTAACTAGTTATCTTGTTTTTGTTTTGTATAATTGAACACTATTGTCTAAATGTGCTAGGATA TGAGCACCAGTTCAGTGAAAGTCGGCCTGATTACGGTTGTCATGATTTCATACCTTTAGTTGAATTTAATAACGCTAGTA GTGGGTTTATTGTGAACGATACTTGCATTGTTGAAGTTGAGATTGCTGTCAGAAAGCATGAGCATGTGAATCAGGTAGAT CCCGCTGTTTGTTCTGAGATTATTGAACATGTTGCATCAGATGGTGAGGTTGTGGATTTCAAGAGTTTTGGGAAAATTGA GAAAGCTTTTATTCCACTCTTAGATGAAGTGTGCTCCTTGCATCCCTCACTAATTGACTGCCAGCAGAAGAGAAGTCGCA GGTTTACAGAATGGGCATTCACAGCTTTGGGTCAGGTTCTACATTTTCTTAAGAGTAGGAAGGTGAAAGATATGAATGCG GATGCTTGTAGTCATCTCCAAGCTTTATGGGAGAAACTTCAGACATTTAATTTTGAGTTGACATGGCTCCAACCCCATAT TCGATCTGCCTTAAGTATGAAAAGTTATATAGAGAAAGCTCAAGAACTGAAAACAATGAAGGAGAATTTGGCAACTCTGG AGATGGAAACCAAATCACTGAAGGAGAAGATATTTACTGCAGAGGTAGATCTTGAAATAGCAAGAAGACATTTGGCAAAA GGTTTGGAAGAGAGGGATTTGGATGCTGAACTAGCATATGGAGTACCTTAAATTCAGGTCATTAAAGAATTCGTAGTTGA TCTGTGTTTCTGTGGAGACAAAAAAAAAAGAATATGGATGTAGGTGTTTATATATATGTGCTTTGACAAATACTTTTCGC TTTATCTATCTGTCTCCAATAACAAATTAAGTCACACCTTACAAATAATTACAAATTATTTACAGCTCTTTCCTTTGTTC AATTTTAGAGAAAACTTAACTCAAGTGAATTCTTCTCAATTTGTTTCTGCTACACATAAATCACACCAGAGGCAGTATGA TCATGATTCATGAGAAGTTGAGAAGTGAGAACAAAACTGCTTTGATAGATTGTAATAGTATATATTAGCTCTGTACATAA CTTGAAGGGGCCTAAAACTTGAACTCTTGAAGCCACAGAAGACCATCATGTTTGTCTTCGAGCTGATTCATGCATATGTG TGAGTATTAAATAGTACAAGGAGTTTAGAACTATAGTACTTGACCCCATATGCTAAAAGATTCAAGAGTGAGCAAGCTTC TAAAATTTTAAAGCATAATGAAAACTAATAGAAGATTTCTGAAGTACAATAATTGTTCACTACTGCCCAACCAAACTCTT CACCTGCAGGTCTGTTCTTTTCTCTGCTATGAATCTTGAAGCAGCTTCATTGCACTTGATGTCTTCCACGTTCATGTGGA TAACCTTGGTCTCCCCGTAGGTTGGATAAAACTTGTATTGGCAGAGGTTTCGTGTCGCCGGAGGGTTGCTGCTACTGCCA CAACTTTTCTGGAGGCCAAAGAACTTCTCTATTTCATTCCCAATCTTGGCAAGGTCTGTCATTTCTTAACAGCACAGGGA ATCAAGAGGGTAGTGATTAAAAAAACTGAAGGAATGCTTGTAATTTTCTGAGTATAAAACTTGAAGGGCAAAGTTATATA TATATAGGTCCACTTTGCATTATTAAGAGTAGCATCTATC
CDS sequence (LotjaGi6g1v0252400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGCGGATGCTTGTAGTCATCTCCAAGCTTTATGGGAGAAACTTCAGACATTTAATTTTGAGTTGACATGGCTCCA ACCCCATATTCGATCTGCCTTAAGTATGAAAAGTTATATAGAGAAAGCTCAAGAACTGAAAACAATGAAGGAGAATTTGG CAACTCTGGAGATGGAAACCAAATCACTGAAGGAGAAGATATTTACTGCAGAGGTAGATCTTGAAATAGCAAGAAGACAT TTGGCAAAAGGTTTGGAAGAGAGGGATTTGGATGCTGAACTAGCATATGGAGTACCTTAA
Protein sequence (LotjaGi6g1v0252400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNADACSHLQALWEKLQTFNFELTWLQPHIRSALSMKSYIEKAQELKTMKENLATLEMETKSLKEKIFTAEVDLEIARRH LAKGLEERDLDAELAYGVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 97 | 97 | 2.0E-32 | – | |
| PANTHER | 1 | 97 | 97 | 2.0E-32 | – | |
| Coils | 39 | 66 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0252400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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