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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0252500 |
| Transcript ID | LotjaGi6g1v0252500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT4G34900.1 xanthine dehydrogenase 2; Swiss-Prot: sp|C6CAI2|MDTB_DICDC Multidrug resistance protein MdtB; TrEMBL-Plants: tr|A0A1J7FQY2|A0A1J7FQY2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0252500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56486853..56489403) extracted from Lotus japonicus Gifu genome v1.2.
GAAAACCCATCCAAACCCAGAAACAAAAAACCCATTCTTATCCCTAAATTCCAACTACATAAAACCTAGCCACCCACCAT TCAATTTGACAGTAGCACTGCAAAACTTTAACCATCAGATCTGATGCGTGCTACAGTTGAAGGAGCTCGAAGAAATCACC TGGGTCACTTCTTCCTCTTCTCTCTTGCCCATTTGGCCTCCAATCTGTCTTCTTCACCTTATCGAACGGCGAACTCCGCC GTTGATTCCTCTTCTTATCCTTCTTTGGAGCCACGAACCCAGTTGAGAGAATGAGTCAGGTTCCACTCAGAGGCGCTGCC AACCTGTCCCTGTGTCTCGTTCCCATCCTTCAGCCTGTCCGAAAGAATCTGCGATTTGGGACAGGGCTGGCCAAGGGAAA AGCTATGGTCTTGTGAGATTTAGGTTTGAATGCGGGAACCTAGGGTTTGAATTTTGTTACCAATGGTCATGTAATCTTCC TCAGCTCTCTGATTTCTGATACCCATTTGCCCCACATAACACCTCTTCTTTTCCCTGTGTTTTATGATTTATCATTTTTT CTCTTAAAATTAAGTTGTGTTTTAGTTGCAGCAGAAAGCCACAAACTGATCTGTAAAGTTTTATGGTATGATATATGTGG GTTTCTTTATGGTTTTTTTTTTTCTGGGTTTTTTTTTGCATATCATGAAGAAGATGATGAAGATCATAGGGGAGGAGATG AAGATGATATATTTATGAGTTTTAAATTTTTTATTAAAAAAAATAAATAAAAATAACACCTGGCCCCGTTAATTTCATGG GCCACCGGAGCTCCGACGTTGACCCAGAGCTCCGGAGGGATGAAAACCAAACATTTTGGCAAAGGTTAGGGACTAAAGCT CACCTTTACTCCGGCGAGGGACAAAAACCAAACATATGGTAAGTAAAGGTTAGGGACCAAAAACTTATTTAAGCCTTTTT CTTACGCAGTTTTGATTTTAGGTTGGTGAAATGAGTAATCAACCCACTGGTGATAAAATGTTGGAGAAATTCACATGGAC AATTAACAACTTCTCTAAGTTGGACTTATCAGAGGAGGTGCCCTCTCAGACTTTCTTAATCGGTGGCCATTTATGGTGAT TATATGAATAATTCTTGGTTTATTGTACAACTATCTCAAGTGTTCCTTGAAATTATTTTTCATTTGTGCAACTTTTTCTT TTACTATATGTGTTTTTGGACTTTTCTTGTAGGCAGCATTTTATCTATTCACGAGGGAACAACTTGACAATTGTTTTGGG TGCTGGGGATCTCGTTATTTTGCCTCATATCCGGAGCATATTTGCAAATTTCAAGTTGGCCCTTATCAATCAAGTCAATG CCGAGAAGACAATTACTGCAGGTATATATATATATATATATTGTGTATATTCTCTCCACTTTCTTCCTCTGTTTTCCTTT AATTTGTTGTCTTAATTGAACAAATTATTTTCTAAATGTGCTAGGATCTGAATACCAGTTCACTGATGCCTATAATTACG CTTGGCCTGTCATACCTTTAGTTGAACTTCTTGACTCTAGAAAAGGGTTTATCATGAACGATACTTGCATTATTATAGCT GAGATTGTACATGTGAATGAGGTCGCTAATCCTTTACATCAGGAAGTCTGCATGTCATCATCACTAGCGGAGGAGCTTGT GGATTTCAAGAATATTGGGAAAATCGAAAAGACTTTTGTTCCATACTTGGAGCTAGAGTGTTCAAACCACCCCTCCCTAA TTGAGTGTCACCAAAAGAGAAGTCAAAAGAGCAGTCGTAGGTTTACTGAATGGGCGTTCACAGCTTTGGGTCGAGTTCTA CATTTTCTTCATACTACTAAGGCGGATGATATAAATGCAGATACTTCTAGTCATCTCCAAATTCTATGGGAGGAACTTCA GTCATTTAAGACATTTAATTTTGATTTGACATGGCTTGAGCCCGGAGTTCTATGGTCCTTAGGTTGGGGAAGTTATAAGG AGAAAGTTGTGCAATTGAAAACAATGAGGAAGAATTTGGCAACTCTAGAGATGGAAACTAACTCGCTGAAGGAGAAGATA TCTACTGTAGAGGTAGATCTCACAATAGCAAGAAGAGATCTTGAAGCAAGAAGAAGACATTTAGAAGAGTTGAATTCCGA GTTGGATTCGGATGGTGAACTAGATTAGGTCGTTAAGGAATTCACATGTTGGTCGGTGTTTCTGTGAGGGGGAAAAAAGA ATATTTTGTGTAAGAAGTTTATGGTTCTTTTGACTGAGAATGAGAATGTTTCCAATTTTAAAATTATGTCAATTTCATTA GACCTATTCCAGTTTCTATTGAACATAGAATATAATTGCTTGTATAAAAATCCACCTCAATATGTGGGTTCTTTAAACCA TCACAAGCTTATTGACAATTGCTTTTTGCTTTGTCCATCTCTGTCTCGAATTACAAGTTGTATATATATTATATAGCCCT TATCTTTGGTGATGAATGGAGGGACAAGAAAATTGATCAAATGTTTTTCCTATTTGTTTTAGCTTAGTCTC
CDS sequence (LotjaGi6g1v0252500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGATACTTGCATTATTATAGCTGAGATTGTACATGTGAATGAGGTCGCTAATCCTTTACATCAGGAAGTCTGCAT GTCATCATCACTAGCGGAGGAGCTTGTGGATTTCAAGAATATTGGGAAAATCGAAAAGACTTTTGTTCCATACTTGGAGC TAGAGTGTTCAAACCACCCCTCCCTAATTGAGTGTCACCAAAAGAGAAGTCAAAAGAGCAGTCGTAGGTTTACTGAATGG GCGTTCACAGCTTTGGGTCGAGTTCTACATTTTCTTCATACTACTAAGGCGGATGATATAAATGCAGATACTTCTAGTCA TCTCCAAATTCTATGGGAGGAACTTCAGTCATTTAAGACATTTAATTTTGATTTGACATGGCTTGAGCCCGGAGTTCTAT GGTCCTTAGGTTGGGGAAGTTATAAGGAGAAAGTTGTGCAATTGAAAACAATGAGGAAGAATTTGGCAACTCTAGAGATG GAAACTAACTCGCTGAAGGAGAAGATATCTACTGTAGAGGTAGATCTCACAATAGCAAGAAGAGATCTTGAAGCAAGAAG AAGACATTTAGAAGAGTTGAATTCCGAGTTGGATTCGGATGGTGAACTAGATTAG
Protein sequence (LotjaGi6g1v0252500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNDTCIIIAEIVHVNEVANPLHQEVCMSSSLAEELVDFKNIGKIEKTFVPYLELECSNHPSLIECHQKRSQKSSRRFTEW AFTALGRVLHFLHTTKADDINADTSSHLQILWEELQSFKTFNFDLTWLEPGVLWSLGWGSYKEKVVQLKTMRKNLATLEM ETNSLKEKISTVEVDLTIARRDLEARRRHLEELNSELDSDGELD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 197 | 186 | 4.0E-39 | – | |
| PANTHER | 12 | 197 | 186 | 4.0E-39 | – | |
| Coils | 141 | 200 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0252500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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