Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0252500 |
| Transcript ID | LotjaGi6g1v0252500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|A0A1J7FQY2|A0A1J7FQY2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0252500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56486853..56489403) extracted from Lotus japonicus Gifu genome v1.2.
GAAAACCCATCCAAACCCAGAAACAAAAAACCCATTCTTATCCCTAAATTCCAACTACATAAAACCTAGCCACCCACCAT TCAATTTGACAGTAGCACTGCAAAACTTTAACCATCAGATCTGATGCGTGCTACAGTTGAAGGAGCTCGAAGAAATCACC TGGGTCACTTCTTCCTCTTCTCTCTTGCCCATTTGGCCTCCAATCTGTCTTCTTCACCTTATCGAACGGCGAACTCCGCC GTTGATTCCTCTTCTTATCCTTCTTTGGAGCCACGAACCCAGTTGAGAGAATGAGTCAGGTTCCACTCAGAGGCGCTGCC AACCTGTCCCTGTGTCTCGTTCCCATCCTTCAGCCTGTCCGAAAGAATCTGCGATTTGGGACAGGGCTGGCCAAGGGAAA AGCTATGGTCTTGTGAGATTTAGGTTTGAATGCGGGAACCTAGGGTTTGAATTTTGTTACCAATGGTCATGTAATCTTCC TCAGCTCTCTGATTTCTGATACCCATTTGCCCCACATAACACCTCTTCTTTTCCCTGTGTTTTATGATTTATCATTTTTT CTCTTAAAATTAAGTTGTGTTTTAGTTGCAGCAGAAAGCCACAAACTGATCTGTAAAGTTTTATGGTATGATATATGTGG GTTTCTTTATGGTTTTTTTTTTTCTGGGTTTTTTTTTGCATATCATGAAGAAGATGATGAAGATCATAGGGGAGGAGATG AAGATGATATATTTATGAGTTTTAAATTTTTTATTAAAAAAAATAAATAAAAATAACACCTGGCCCCGTTAATTTCATGG GCCACCGGAGCTCCGACGTTGACCCAGAGCTCCGGAGGGATGAAAACCAAACATTTTGGCAAAGGTTAGGGACTAAAGCT CACCTTTACTCCGGCGAGGGACAAAAACCAAACATATGGTAAGTAAAGGTTAGGGACCAAAAACTTATTTAAGCCTTTTT CTTACGCAGTTTTGATTTTAGGTTGGTGAAATGAGTAATCAACCCACTGGTGATAAAATGTTGGAGAAATTCACATGGAC AATTAACAACTTCTCTAAGTTGGACTTATCAGAGGAGGTGCCCTCTCAGACTTTCTTAATCGGTGGCCATTTATGGTGAT TATATGAATAATTCTTGGTTTATTGTACAACTATCTCAAGTGTTCCTTGAAATTATTTTTCATTTGTGCAACTTTTTCTT TTACTATATGTGTTTTTGGACTTTTCTTGTAGGCAGCATTTTATCTATTCACGAGGGAACAACTTGACAATTGTTTTGGG TGCTGGGGATCTCGTTATTTTGCCTCATATCCGGAGCATATTTGCAAATTTCAAGTTGGCCCTTATCAATCAAGTCAATG CCGAGAAGACAATTACTGCAGGTATATATATATATATATATTGTGTATATTCTCTCCACTTTCTTCCTCTGTTTTCCTTT AATTTGTTGTCTTAATTGAACAAATTATTTTCTAAATGTGCTAGGATCTGAATACCAGTTCACTGATGCCTATAATTACG CTTGGCCTGTCATACCTTTAGTTGAACTTCTTGACTCTAGAAAAGGGTTTATCATGAACGATACTTGCATTATTATAGCT GAGATTGTACATGTGAATGAGGTCGCTAATCCTTTACATCAGGAAGTCTGCATGTCATCATCACTAGCGGAGGAGCTTGT GGATTTCAAGAATATTGGGAAAATCGAAAAGACTTTTGTTCCATACTTGGAGCTAGAGTGTTCAAACCACCCCTCCCTAA TTGAGTGTCACCAAAAGAGAAGTCAAAAGAGCAGTCGTAGGTTTACTGAATGGGCGTTCACAGCTTTGGGTCGAGTTCTA CATTTTCTTCATACTACTAAGGCGGATGATATAAATGCAGATACTTCTAGTCATCTCCAAATTCTATGGGAGGAACTTCA GTCATTTAAGACATTTAATTTTGATTTGACATGGCTTGAGCCCGGAGTTCTATGGTCCTTAGGTTGGGGAAGTTATAAGG AGAAAGTTGTGCAATTGAAAACAATGAGGAAGAATTTGGCAACTCTAGAGATGGAAACTAACTCGCTGAAGGAGAAGATA TCTACTGTAGAGGTAGATCTCACAATAGCAAGAAGAGATCTTGAAGCAAGAAGAAGACATTTAGAAGAGTTGAATTCCGA GTTGGATTCGGATGGTGAACTAGATTAGGTCGTTAAGGAATTCACATGTTGGTCGGTGTTTCTGTGAGGGGGAAAAAAGA ATATTTTGTGTAAGAAGTTTATGGTTCTTTTGACTGAGAATGAGAATGTTTCCAATTTTAAAATTATGTCAATTTCATTA GACCTATTCCAGTTTCTATTGAACATAGAATATAATTGCTTGTATAAAAATCCACCTCAATATGTGGGTTCTTTAAACCA TCACAAGCTTATTGACAATTGCTTTTTGCTTTGTCCATCTCTGTCTCGAATTACAAGTTGTATATATATTATATAGCCCT TATCTTTGGTGATGAATGGAGGGACAAGAAAATTGATCAAATGTTTTTCCTATTTGTTTTAGCTTAGTCTC
CDS sequence (LotjaGi6g1v0252500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAATCAACCCACTGGTGATAAAATGTTGGAGAAATTCACATGGACAATTAACAACTTCTCTAAGTTGGACTTATC AGAGGAGGTGCCCTCTCAGACTTTCTTAATCGGTGGCCATTTATGGCAGCATTTTATCTATTCACGAGGGAACAACTTGA CAATTGTTTTGGGTGCTGGGGATCTCGTTATTTTGCCTCATATCCGGAGCATATTTGCAAATTTCAAGTTGGCCCTTATC AATCAAGTCAATGCCGAGAAGACAATTACTGCAGGATCTGAATACCAGTTCACTGATGCCTATAATTACGCTTGGCCTGT CATACCTTTAGTTGAACTTCTTGACTCTAGAAAAGGGTTTATCATGAACGATACTTGCATTATTATAGCTGAGATTGTAC ATGTGAATGAGGTCGCTAATCCTTTACATCAGGAAGTCTGCATGTCATCATCACTAGCGGAGGAGCTTGTGGATTTCAAG AATATTGGGAAAATCGAAAAGACTTTTGTTCCATACTTGGAGCTAGAGTGTTCAAACCACCCCTCCCTAATTGAGTGTCA CCAAAAGAGAAGTCAAAAGAGCAGTCGTAGGTTTACTGAATGGGCGTTCACAGCTTTGGGTCGAGTTCTACATTTTCTTC ATACTACTAAGGCGGATGATATAAATGCAGATACTTCTAGTCATCTCCAAATTCTATGGGAGGAACTTCAGTCATTTAAG ACATTTAATTTTGATTTGACATGGCTTGAGCCCGGAGTTCTATGGTCCTTAGGTTGGGGAAGTTATAAGGAGAAAGTTGT GCAATTGAAAACAATGAGGAAGAATTTGGCAACTCTAGAGATGGAAACTAACTCGCTGAAGGAGAAGATATCTACTGTAG AGGTAGATCTCACAATAGCAAGAAGAGATCTTGAAGCAAGAAGAAGACATTTAGAAGAGTTGAATTCCGAGTTGGATTCG GATGGTGAACTAGATTAG
Protein sequence (LotjaGi6g1v0252500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNQPTGDKMLEKFTWTINNFSKLDLSEEVPSQTFLIGGHLWQHFIYSRGNNLTIVLGAGDLVILPHIRSIFANFKLALI NQVNAEKTITAGSEYQFTDAYNYAWPVIPLVELLDSRKGFIMNDTCIIIAEIVHVNEVANPLHQEVCMSSSLAEELVDFK NIGKIEKTFVPYLELECSNHPSLIECHQKRSQKSSRRFTEWAFTALGRVLHFLHTTKADDINADTSSHLQILWEELQSFK TFNFDLTWLEPGVLWSLGWGSYKEKVVQLKTMRKNLATLEMETNSLKEKISTVEVDLTIARRDLEARRRHLEELNSELDS DGELD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 135 | 133 | 4.9E-65 | – | |
| PANTHER | 3 | 135 | 133 | 4.9E-65 | – | |
| Gene3D | 9 | 139 | 131 | 2.4E-18 | ||
| ProSiteProfiles | 11 | 132 | 122 | 14.254 | ||
| CDD | 13 | 132 | 120 | 1.84684E-13 | ||
| SUPERFAMILY | 13 | 138 | 126 | 3.43E-18 | ||
| Pfam | 18 | 132 | 115 | 1.6E-7 | ||
| PANTHER | 134 | 318 | 185 | 4.9E-65 | – | |
| PANTHER | 134 | 318 | 185 | 4.9E-65 | – | |
| Coils | 262 | 321 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0252500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…