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LotjaGi6g1v0253100.1

Overview

Field Value
Gene ID LotjaGi6g1v0253100
Transcript ID LotjaGi6g1v0253100.1
Lotus japonicus genome version Gifu v1.2
Description RNA-binding protein; TAIR: AT5G04600.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O74978|YQL5_SCHPO Uncharacterized RNA-binding protein C1827.05c; TrEMBL-Plants: tr|A0A151RNG2|A0A151RNG2_CAJCA Putative RNA-binding protein C1827.05c family; Found in the gene: LotjaGi6g1v0253100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:56545621..56551204) extracted from Lotus japonicus Gifu genome v1.2.

ATAACCCATAAACTTCAAACTCTAATTCCTACTTCAACACAACGACGACACAAGTTGCAGTCTCTTGCTCTTTGCCTCAC TCCTTCTATTCACAAATTTCTGCAAAAAATTAGGGTTTCGACACAGTAAGATGGGAGGGAAGAAGGCAAAGAAAGCGATG CAGAAGAGTTTGAAAAGGGTCACTGCTGCTAAACCCTCTGATGGTCCTGATTTTTTGGTATGTCAATGTTCATAGCTCGT TCTCTCTCGTCAATGGTGGTTTTATTTGTTCCTAATCTTTGTTTCGCGTTTTCTGAAGCCCTTGGAAGGTGGTCCTGCTC GGAAACTTCCCGTGCAGACACCGTTGGAGAATAAAGGCACCGTCTTGTATGTCGGTCGGATCCCACATGGGTTCTATGAG AAGGAGATTGAAGGTTTGTTCACTTTACATGTGTTTTGTTGTTCCTCAAATTTGAATTTGTTTGCATGGAATATGTGTTT ATAATTGTTTGCTAATTGTAGGTTATTTTGGACAATTTGGAACCATCAAGAGGTTGAGAATTGCCAGAAACAAAAAGGTT TGGTTCATGAACTTGTTTTGTTTGTATCTGTTATGTTTGCTTACTCTTGTGTCAGCTTAATCTTTATGTTTGGCATGCTT TACTTTTATCTAGGTAATGGTTATTTGTGTTGAATATTTCATTATTGTGTGTGTATTCTCCTAATTTGAAGAATTTGAAG TTTCAAAATGAAAAAATGTTCAGACATGATGTTAATAGTTATTAGTTCCTCTGCTCGGTGTGGAGCGATGTTTAGGTTTA AGGGTTTTTGTTTTGATTGGTTCTTTTGGATGGATGTCTGGCTTCTGAGCCATGTTACTTGTTTCAGTTAAATACATGCA TTTAACCTTGTGTGTTTTCTGTTTAATTATCCTTTTCACTGATGATTGATATTGATGATATCTATTGGTTGATGTTTAAC AGACTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTGCTGAGGTAGTTGTTGTTTCCTCTGGCCGGTTTCTG TATTCTGACTTGTGGCTATGATCTTTGGTTTAAACTTCTCTTTCTTTGTGCTGGTGTTTTTTTCACTTTGTAGGTAGCAA AAATTGTAGCTGATACTATGCACAATTATCTACTATTTGCGCACCTTCTCCAGGTTCATGTGATGCCTCCAGAGCAGGTT CATCCAAACTTGTAAGTTATTAATTCCTTTTTCGGTATTTATTTTAGGGTTTCATCATATATTCATATGTTTCCTTAATG TTAGACTTTTTTATTCTGTAAAGGTCTTTGTAAAGAGAAAAGTAGTAGAATTCGCTAAAATGACCGGGGAGGGGTGGAAA TGACTAGAATCAAAGAAAAGACAAAAAACTAGCACACGGGCCCATCTGGATGTTCATAAATTCTTTAATTTTTGAGTTTG GTTCCATAGAAAGATGATATTATCTAGTTGTAGGATTGCAGGCCTATTAGTTTGGTCATGATGATTGCAGGCTTCTCAAC ATGATTATTCTAACCTCCCCTCACCAAAAACAATCAAATAGAGACCCTCTTGAAAAAATTCAATGAGCAGAAACCCTAGT ATGTAGGAAAACTATCATAACCCAAATTGTACGTCAAATAATAACTGGATAAAAAGACTTGCATTGGCTTTTAACCAAAT ACCCCACTTGCCCCAAAAAAGAGCAGGACTCCCAATCATCTTTCCCTCCTTTGTATCAAAGCCTGTAAAATTGCAGACTA AATTTAAATTTGTCTTTGAGTTCTGTGAAAGAGTTTGTTTTGTGTTCTGGATATCTTCAAGAGCGTTACATGATATGGGA GTTTTTCCTTCCAGATGGAGAGGGTTCAATTACCGTTACAAGCCATTGGACTCTGTCGAAATTCAGCGAGAGCAACATGA CAAGGTATCTTGATCAATGAAGAAGATAGTATATCAGTCTGATTCTCAGTATAAACGAAAGCTTGTTTTGTTCATTTTCA GGAAAGAACATTGGAAGAGCACAGAAAGTTAGTTGAAAAGATTGTGAGTCGTGATAAAAAACGTCGTAAGAAGATAGAGG AAGCTGGCATTGATTATGAATGCCCTGAGATTGTGAGTTTTTTGCCTATACCAATATATGGTTGCTTTAGTGTTTTAAAG TCCAAATCTTCAATTTCATTCTCATGTTGTGTAATTGTTGTTGCAGGTGGGTAACATCCAGCCAGCTCCAAAGAAATTAA AGTTTGAAGACTGAGTAGGTATAACCCTTTGTGAAAGGGAGGCCTCTTCACCTCGGCTTATGTTGTGTTCCCACCAGTTG TGTGCATGCTAAATGTATCATGAAAGCTGATGATTCTAGAGTGTCCTGAGTTTATAGATAGCGCGTTTTGTTACCTTCTC TTAGATGTGTTCGAAAGCTGATGTTCTACCATGTTGTGAGCGACACTAGAGAGACTGTTGTTTTAGGATGAAGTACTAGC AATGACTTGCAAGGGCAAGAGCTTCCAATTTTGAGTCTTCCGAAACCTTCTATTCTGATGAACATTTATAGAAGTATTAT CCACTTCGTATATTCATCAGTGTTTATTGCAGTTATCGCCTAAAGTGTATTATTTATTTAAAATGAAATTCCCAATAGTT TGACCAAATTTTAGATTGTTCACTTATGTTTCTTGGATTTGGATCCTTTCGACCAAAAATACAAAAAGGAATGGATCCTA ATGTGGCTAATTAGCAAACTGAGTTCAAAGTGTGTCGACTTGCAAATATGGCCAGGCCAAACAATGTCTTGTTGACAAAT TATGTTCAGGGTCAATTTTTGAATTAAGTATAGCAAGAAGTACTTAAATGAACATGACAAATGGTGAGATGGTGAAGACA ATATGATAGCAGCAAACCAATCATTCGTTAATCCAAGGGAATTAGTTTTACAAATTCTGCCATTTATCCACCCTAGAACA GTGTTAAACATGTTATGCGTGATGCTTAAAATTTACATTCAAAACATTATTCAGGTACTATACTAATGATACAGTTAACA TCAGAGATGAATGTAACTTTTTAACAAAGAAAGCTCTACATATGCTCTGGTTTGTGTTCTGTTGCATGCTATTCTTAAGC TTGATATTCATAACTTTCAGCAAATCAGAAGACTGAACAGCATGAATGTATTATTAAAGCAAGCTTATGTTTTTTTATTG AACTATCAGTGTTCAGTCCATCTTGGATCCTTTGATGTTGACATATCTGAAGCAGTAAAAACTGACTGTTAGAACTATCA ACCACCATAGCGGTACTTGACGGACTTAGGGGGCTCCTCTTCCATGATGCCAGATCCTGTTGTTGCCAAGTACTCGCGGA TGGTTGTTTTACGGTCAGCAAGGTAAGTGTGATCCAGAAAGTTGTTGTAGGCTGTGTCATCAAGATTCTTTGCAGCCAGT ACACTACAAAAAAATTCATAATTCCTGTTAATTTACAATGAATCCAACACAAGACTCAGTTAAGAGGGAAATTGCAAGAA GTCCCTCAAGAAAACAAAAAAGAATGCAGAAACTAGAAAGGAGCAATGTAGCCCATGAATGTGTAACAAAATCAGAATTG TCATCTAAGAAGGAACTATTTTCTGTCAGTTGCATATTTTGTATTCTTTAACTGACAGCAAGGACCATGCGACCAGGAAA AAATAGTTAACCAGAAATCTAGATGAAGTATGATAAGTTTGAACTACCTCCCTCCAAATCAAAATTTGCATCCAAAAAGT GCTTAGTGCATTTACCAGTGTCGAAGATAAACATCAAAACTTTCATCTAAAAAGTGCTTACCAGTGTCGAAGATAAACAC GGCAAGGTAAGACATCATCTCTCCAAATTTTATCAATATTCCACCGTCCATATTGTTGAAAATAAATTTCCTTGTCTCCT GAATGGAATCATATGTAAGCGTGGATAAATGAAAAAATAAGACAAGATGATCTAAGCATGACAAAGGGTGTGCATAAACA GACTTCCACAATGATATTTTACATATTACATAAAACAGTAATCACCTCCAGTGCAATGATGGGAGGGTGCTATCATCAAC CATTTCATATTTCTGTCTAGACAGAAAGTTGGGAAATATTGAGGAATTTAAATAAATTTTTTTTATAAGCGAGGAATGTA AATAATTATTGGAGAACATGTTAACCCTTCATAAAAAAATACATGTTATATTTTAGGTTAATCAGGAGATTTCCATGCTT ACATATTTAGCTCAAAATACAGTAGTTAGCTATTTGCTGATCAGTTTCTGTAGTCAGATAGATTGAGGTGCAAGTATATA CATCAACTAAGTGAACTAACACGAGAAGTTGGATGAATACCAGCATTTCATGTTTCCAAAACAATACAAACCCCATGTCC TGAATAAGTATAATGCTAATGATGAATTACCTTTACATCGAATCTTGAAAAACTCCTCATCACTATAACGAGCACAAAGG ACCTGCAAACATTTTGACACATCAAAAGAATCCTCAGCTAATTAAACAAAACCATTCTTCCTTAGGATGTCATAAACACA GTGAATCATACTTTTCTACAACAATAACTAATAATCATCACATACCGCCGGGAACTCAAAAGGCTTGCCATCAAGCGTTT CAGGAACAACCTAAGATACAAAGAATTGAACATATCACACCACATCTAAAAACAGCAGAAAACAATCAACACATCTAAAA GCAGCAATAATCAAAATCAAAATCTACATCTTCCTACTTACAGCAAGAAACCGAAACTCGACCTCCCTCTTGATATAATC TGGAATCTGAAAACAAATTCAACCCTATAAAAGTTAGCTCCAATGCTCAGTCAACAAAAAGTCAAAACCCCAGTTACACA AATCAATCAAAGCAAGCAAGCATTGAATTGAACTACTCAGTCAATAGTATACCTCTGATTTTCCAATCTCAAACACTGTT ACTACAAGTGTTTCTCCATCACACGGTTCCACACTCAAACTTGAAATCTCCTAACAACGTTTTCATCAACACACAGTAAA AACAGTGAGAATTCAAAAAGCTTAAGGAGTGAGGATAAGAAGAGAAGAAGGAACCACCATGGTTTCAGGTTTGGCAATGC CGCGTTCGAAGAAAACGGGAGCGACGTGAGCGAAGACGCGGCGGAAATGGTTCAACCTGGCGGTTCTGAAATTGAGCAAA TCGGGGAAAGTGCTTCTTGCGCTTCTCTCGGAGAGGAGAGAGCCGAAGCCGCAGATGGAGATGTAACCGTCGGGAGAGAG GAGAGAGGAGAAGTGTGATTCGTCGATGAGTTCGGTGACGGTCGGAGGAGAGGACATGGCGGAGGAGAGAAAGGGTCGCT GTGTTTTGGAGAGTGAAGGGAGTGGAGTTGAGAGGGCGGCGCGTTGGTGTGACGCGCCGAATGTGAGACGGGGAGGGAGT GTGAGTTGAAAAGTTAAGGAAGTGGTGGTGATGCTCATAGCAAGCTGCAAGTTTGAACTGCCACTTGTTTTCACTTTATT GGTAGCTAATGTATTTGATATTACTATATTTTTCAATAAACCATTTTTATTTCTTCATTTCAAC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0253100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAGGGAAGAAGGCAAAGAAAGCGATGCAGAAGAGTTTGAAAAGGGTCACTGCTGCTAAACCCTCTGATGGTCCTGA TTTTTTGCCCTTGGAAGGTGGTCCTGCTCGGAAACTTCCCGTGCAGACACCGTTGGAGAATAAAGGCACCGTCTTGTATG TCGGTCGGATCCCACATGGGTTCTATGAGAAGGAGATTGAAGGTTATTTTGGACAATTTGGAACCATCAAGAGGTTGAGA ATTGCCAGAAACAAAAAGACTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTGCTGAGGTAGCAAAAATTGT AGCTGATACTATGCACAATTATCTACTATTTGCGCACCTTCTCCAGGTTCATGTGATGCCTCCAGAGCAGGTTCATCCAA ACTTATGGAGAGGGTTCAATTACCGTTACAAGCCATTGGACTCTGTCGAAATTCAGCGAGAGCAACATGACAAGGAAAGA ACATTGGAAGAGCACAGAAAGTTAGTTGAAAAGATTGTGAGTCGTGATAAAAAACGTCGTAAGAAGATAGAGGAAGCTGG CATTGATTATGAATGCCCTGAGATTGTGGGTAACATCCAGCCAGCTCCAAAGAAATTAAAGTTTGAAGACTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0253100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGGKKAKKAMQKSLKRVTAAKPSDGPDFLPLEGGPARKLPVQTPLENKGTVLYVGRIPHGFYEKEIEGYFGQFGTIKRLR IARNKKTGKSRHFGFIEFESAEVAKIVADTMHNYLLFAHLLQVHVMPPEQVHPNLWRGFNYRYKPLDSVEIQREQHDKER TLEEHRKLVEKIVSRDKKRRKKIEEAGIDYECPEIVGNIQPAPKKLKFED
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 33 33 - –
PANTHER
PTHR46754
2 210 209 3.6E-100 –
PANTHER
PTHR46754:SF3
2 210 209 3.6E-100 –
Gene3D
G3DSA:3.30.70.330
3 132 130 8.8E-23
IPR012677
SUPERFAMILY
SSF54928
49 195 147 1.61E-23
IPR035979
ProSiteProfiles
PS50102
50 128 79 14.863
IPR000504
SMART
SM00360
51 124 74 1.6E-18
IPR000504
CDD
cd12307
51 124 74 2.47438E-42 –
Pfam
PF00076
52 116 65 4.5E-14
IPR000504
Coils
Coil
151 171 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0253100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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