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LotjaGi6g1v0254900.1

Overview

Field Value
Gene ID LotjaGi6g1v0254900
Transcript ID LotjaGi6g1v0254900.1
Lotus japonicus genome version Gifu v1.2
Description Pathogenesis-related protein PR-10; TAIR: AT1G24020.1 MLP-like protein 423; Swiss-Prot: sp|P93333|PR101_MEDTR Class-10 pathogenesis-related protein 1; TrEMBL-Plants: tr|I3SSP7|I3SSP7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0254900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:56721200..56722409) extracted from Lotus japonicus Gifu genome v1.2.

CACTATGTCTTTAATTATCAGCAGACATCTTTGCCTAATTAAGGTGTTTTCTATTGTAAATAACACAACTAGCTGGTTCC TATAAATACTAAGCCTCAACTCTACTTATCATAAACCACACAAGCAACCAAATAACCTCTTATTCTCCCAATAGCCGTTT CATTCTCCTCTTGTGTTAAATTAAATTAATTCTCCTTTGATCACCAATTCATTCATCATGCTTTACATTTTCCAGGATGA GACCACCTCCACTGTAGCCCCAGCTAGGCTTTACAAAGCTCTCACCATTGATGGTGATACCATCATCCCAAAGGTTATTC CAGGCTTCAGAACTGTTGAAATTGTTGAAGGAAATGGAGGCCCTGGAACCATCAAGAAGCTCACTTTCGAGGAAGGTCAG CACATATATGTTACTTATGCTCTACATATATATAATCTATAATACGTGCATTATAAGTTGATCTAATGAAATAATTAGTC TAAAAATGAAATAATTGGTCTACAAATAAACTAATAATTAATATTAATGGTGATGGTCTTAATTAATGTGTGATTGTGAA AATAATCAAATGAATAATGTGCAGATGGGCAAACCAAGGAATTGTTGCACAAAATTGATTCAATTGATCAGGCCAATTTG AAATACAACTACAGCATAGTTGGAGGTACTGATCTTCCAGCCACAGTGGAGAAAATCTCATTTGAGGCCCATTTGGTTGT GGGTTCAAATGGAGGATCAATTGCAAAACACAATATCAACTACCACACCAAAGGCAATGCTAGTTTCTCTGAAGAGGAGG TCATGGCTGGCAAGGCCAAGGGTGATGCTCTTTTCAAGGCCATTGAGGGTTATGTTTTGGCCAATCCTGATTACAACTAA AGCCTCTCGCTAAGCGATTGCATATATATGCCGTGATCAACCGCATATAATCCAGTGTGCTTAATTTGGTGCCAATGTAA TTCTCCTTTTTATTTTATTTGCTTTTTCCGCGGAATTGTGAGATTTCATTTCGTGAGTGTTGTACCTCCATTCAATAAAT AATGAGCAACAATTTCAGTATATAAATGACCGCAAATTAAATCGTAGACACAGTGTGGCACCCTACGCAACAAACATAGC ATCATGGTCAGGTCAGCTATCCAGAATTTTCTTGTTGGAAAGCGAAATATAAGACTGAAAAAAATTTTCATTGAATATCA TATATACTTT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0254900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTTACATTTTCCAGGATGAGACCACCTCCACTGTAGCCCCAGCTAGGCTTTACAAAGCTCTCACCATTGATGGTGA TACCATCATCCCAAAGGTTATTCCAGGCTTCAGAACTGTTGAAATTGTTGAAGGAAATGGAGGCCCTGGAACCATCAAGA AGCTCACTTTCGAGGAAGATGGGCAAACCAAGGAATTGTTGCACAAAATTGATTCAATTGATCAGGCCAATTTGAAATAC AACTACAGCATAGTTGGAGGTACTGATCTTCCAGCCACAGTGGAGAAAATCTCATTTGAGGCCCATTTGGTTGTGGGTTC AAATGGAGGATCAATTGCAAAACACAATATCAACTACCACACCAAAGGCAATGCTAGTTTCTCTGAAGAGGAGGTCATGG CTGGCAAGGCCAAGGGTGATGCTCTTTTCAAGGCCATTGAGGGTTATGTTTTGGCCAATCCTGATTACAACTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0254900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLYIFQDETTSTVAPARLYKALTIDGDTIIPKVIPGFRTVEIVEGNGGPGTIKKLTFEEDGQTKELLHKIDSIDQANLKY NYSIVGGTDLPATVEKISFEAHLVVGSNGGSIAKHNINYHTKGNASFSEEEVMAGKAKGDALFKAIEGYVLANPDYN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.530.20
2 157 156 9.7E-48
IPR023393
PRINTS
PR00634
2 22 21 7.7E-44
IPR024949
PANTHER
PTHR31213
3 156 154 1.2E-64 –
PANTHER
PTHR31213:SF88
3 156 154 1.2E-64 –
CDD
cd07816
5 150 146 4.97152E-47 –
SUPERFAMILY
SSF55961
6 157 152 3.21E-36 –
Pfam
PF00407
6 153 148 3.8E-24
IPR000916
PRINTS
PR00634
25 35 11 7.7E-44
IPR024949
PRINTS
PR00634
48 57 10 7.7E-44
IPR024949
PRINTS
PR00634
64 83 20 7.7E-44
IPR024949
PRINTS
PR00634
83 96 14 7.7E-44
IPR024949
ProSitePatterns
PS00451
87 119 33 -
IPR024949
PRINTS
PR00634
108 124 17 7.7E-44
IPR024949
PRINTS
PR00634
142 152 11 7.7E-44
IPR024949

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004864
Molecular function Protein phosphatase inhibitor activity Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from phosphorylated proteins.
Subterm of
GO:0006952
Biological process Defense response Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
Subterm of
GO:0009738
Biological process Abscisic acid-activated signaling pathway A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription.
Subterm of
Part of
GO:0010427
Molecular function Abscisic acid binding Interacting selectively and non-covalently with abscisic acid, plant hormones that regulate aspects of plant growth.
Subterm of
GO:0038023
Molecular function Signaling receptor activity Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0254900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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