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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0256900 |
| Transcript ID | LotjaGi6g1v0256900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit tim22; TAIR: AT4G16160.2 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; Swiss-Prot: sp|Q0WMZ5|OP162_ARATH Outer envelope pore protein 16-2, chloroplastic; TrEMBL-Plants: tr|I3S2D8|I3S2D8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0256900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56983715..56986334) extracted from Lotus japonicus Gifu genome v1.2.
ACTACTCTAACACTACATTACGTTTCTTTCTTCCTTCCTTCTTATGGAAAGAGTGAACCAGAAACAGAGGAAGGAAGGAA AAGGAACGATTGCAGTTGCAGCAGCATTGAATACTCTAAGATGAACCTGAAGACGAGCAGTGAGGTGGAGACTCGAGCTC TCCTTGATAAGGTTTCTAGCTTCGACAAAAATGAAGGGCTCTTCAACCTTGGCCACCCTCTTCTCAACCGCATCGCTGAG TGCTTCGTCAAAGCTGCTGGAGTGAGTTCAATTCAATTCAACCCTTTTCTCTTTTTCTCTGTTTCTATTTCTTCATCTAT GTGCTTCCATTCATCATATTATTCACCTTCTCTTCCAGATAGGAGCGGTTCAAGCTGTGTCACGCGAAGGTTATTCCATT GCTATTCAAGGTGTAACAACACTACCTCTCTTACTTCATTAAACATGCTAGGGAGTTACTTACAATCTTGATTGATCAAT GATTATAATAATTTAAGCCAAATCAAATGTTATGTACTAATTATTTGGATGAAACATTGATCTTGAATATGAAATGGATT CACAGGTACCAGGGGTGTTGATAGCAACAATGGCAGTATACCACCGGAACTTTCAGGTGCCAAGAAAAATCATTTGCCTG GTCTTAGAGGTACATGTTATTTTCCACCCTTAAATTAAATGTGGGGAGTACGAATATATTGAAGAATTGAAGTTGCTACT AAGTTGAATTGTTTCCATTTAGGCCAATCTCTTAATTGAAGGGAGAATATTAATAATTTGTTTCTTTTTTGTTTGTGTAT TTAGGAGAGACCAATAGCAAATCTTTCGAAGCCATGGTGAGTTCATAATCTTATAATTTTGCATATGCTTCTCTCATTAA CACCCTTAAAAGCCTGTTGTTCCTTATATATGGCCTTATTCCTTAATGGTCTTCAAGTGAAGTATAAGTGAGCCTTTGGT CATACTTTATAGTTTATCTGTTAATTGTGTTTCCTTTTTTTCATGCACAGGTATTGAAATCTGGGAAAGAGTCCTTACAA TGGGGTACTGAAATTTTCCCTTTGAACAGCTACAAAACTATTTGCTTCTGTTATATCGTTATGTGAATTTTCTAGTGATC AGTGATTGTTATTAGTTGTATAGTAACTTTGATTTGCCAAAGTTTCAAGGCCTAACTTAGTCTAGCAACATGTTCTACTT TCACTTTTCATGTTCTGTGCTTTATTCAGTTTAGTAGAAAAGGGTTTTTGTTTTGCTTCAATGACGATTTTCTGTATGAA ATTGCCAATCTTACAAATTTTAAGGGTATGCCCTACATGGAAATATGGACCTTAAACATTCCTTTGTAATGCAGGGGTGG CTGCAGGAATATATTCAGGTCTAACATATGGGCTGAAGGAAGCTCGTGGTGCTCATGATTGGGTAGTACTTCTTTTCTGG GTTTATAACATGGGTTTGCATTTGAGATCTCAATCTAAATTTTACCAAATACTTAAATGTTTGAACTTTATTTTTGCGAA AAAATAACACACGTAGGTGAACTTGAGCCTATTTGGATGCGGACTAAAGAACACTTATTGGAGCTTACCCAAACAGACAT GTTATTCATAATTATTGTGAATCACTGAATCCAACATGACTGAATACAATTTTAACCTATGTACTTTATTTATTTGGATT GAATTCATTCACTCTGTTTCTCTGTAGGCATAATGGATATCCTTTTAATCTCTTTTCAACTCCAATTCATCTTGTTGTGA TGGTTGTTTGTCACTTTTTCTTTTATGCAATAATAATAAGTAATAAGCATTGATCCATCATCCATCTTGTTGCATATTTA GATAAGGTTTATGTTTCAGAAAGTTTAAAAGTAAATTTGTTCCCACTTCTTTGCCAATTAATATTCTTATCTGAATGTGA AATTCATCATGTTTATTGCTTTCTTGAAGTAGATCTACAAACATGACCAAATATCGAGTGGAACCCCAAAGATATATAAT TTTTAATATGTTGGAGTGTACATAGGGATTAAGGAAATGGGATTTTCAACTTCTAGGGATGAAATTGACAAAATTTACCT TTAATGACTGAAGTGATTGAAGATACATTTCTCATGTATTAATATACGATATTACTATCTTTTAATCTGGTGTTCAACAT GGTGCTATATGATCTATCTCTTCTTTCTTTTATTCACAACAATAATAACACCATCCATTCTGTTTGTTTGATGCAGAAAA ACAGTGCAGTTGCTGGAGCAATCACTGGGGCATCCCTTGCCCTTACATTGGAAGATGTCAGTCATGATCAGATTGTGCAA TGTGCTATCACTGGAGCTGCAATCTCCACTGCTGCAAATCTTCTCACTGGGATTTTCTAAATGGATACCCTGTGTAGAGA TTGGCTTTAGAGATTAATGGCTCTCTTTTTTCCTTTTAAATTGTGACAGTGAATCTTGTATATCTATGAAACTTGCATGG ATTTCTTATCAATGTTGACTTTATTCTCAAACTTCTTGTCTTGCTTAAGCCTATTTTTCTCCTTCATAACTCTGATTTAT TCGCATGACAGGAAAATATGATAAAAATAGAAGAAGAAAGTGAATATCTATGTGTTCTGC
CDS sequence (LotjaGi6g1v0256900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCTGAAGACGAGCAGTGAGGTGGAGACTCGAGCTCTCCTTGATAAGGTTTCTAGCTTCGACAAAAATGAAGGGCT CTTCAACCTTGGCCACCCTCTTCTCAACCGCATCGCTGAGTGCTTCGTCAAAGCTGCTGGAATAGGAGCGGTTCAAGCTG TGTCACGCGAAGGTTATTCCATTGCTATTCAAGGTACCAGGGGTGTTGATAGCAACAATGGCAGTATACCACCGGAACTT TCAGGTGCCAAGAAAAATCATTTGCCTGGTCTTAGAGGAGAGACCAATAGCAAATCTTTCGAAGCCATGGTATTGAAATC TGGGAAAGAGTCCTTACAATGGGGGGTGGCTGCAGGAATATATTCAGGTCTAACATATGGGCTGAAGGAAGCTCGTGGTG CTCATGATTGGAAAAACAGTGCAGTTGCTGGAGCAATCACTGGGGCATCCCTTGCCCTTACATTGGAAGATGTCAGTCAT GATCAGATTGTGCAATGTGCTATCACTGGAGCTGCAATCTCCACTGCTGCAAATCTTCTCACTGGGATTTTCTAA
Protein sequence (LotjaGi6g1v0256900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLKTSSEVETRALLDKVSSFDKNEGLFNLGHPLLNRIAECFVKAAGIGAVQAVSREGYSIAIQGTRGVDSNNGSIPPEL SGAKKNHLPGLRGETNSKSFEAMVLKSGKESLQWGVAAGIYSGLTYGLKEARGAHDWKNSAVAGAITGASLALTLEDVSH DQIVQCAITGAAISTAANLLTGIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 184 | 180 | 3.2E-78 | – | |
| PANTHER | 5 | 184 | 180 | 3.2E-78 | – | |
| Pfam | 35 | 174 | 140 | 4.1E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0256900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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