Transcript — View — Lotus Base

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LotjaGi6g1v0257500.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0257500
Transcript ID	LotjaGi6g1v0257500.1
Lotus japonicus genome version	Gifu v1.2
Description	UDP-glycosyltransferase; TAIR: AT5G54010.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp\|I1KEV6\|FG3H_SOYBN UDP-glycosyltransferase 79B30; TrEMBL-Plants: tr\|I1LS93\|I1LS93_SOYBN Glycosyltransferase; Found in the gene: LotjaGi6g1v0257500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:57038653..57040775) extracted from Lotus japonicus Gifu genome v1.2.

CCTGAGAGTAACTTTACTTTAACGATGACAATATATACATTCTACGGCTTATCTAAAAGAAGTACTGTAACGAGGATCAC GTGGTGTCCTCACTCTACGTTATAAAGTTTACAACTGTGATGTATTCATAACAACTTATCCATTCTACTTTACCTTTTCT GGTTCAGTGTCCTCTCCTTGCAATCTTGCATCTGGTGTGCTTTTTTTTTTCTTTACCTTTTTGGTTCACAAATCACAATC ATTGTCCTCATGGATTCACCTTCTTTGAACATAGCAATGTATCCATGGCTAGCTCTTGGTCATCAAACTGCATTCATGCA ACTATCCAACAAGCTAGCCAAAAAAGGCCACAAAATCACTTTCTTCACCCCCCCAAAAGCACAAACCAAGTTAGAGCCAT TCAATCTCCACCCTCATCTTATCACCTTCATCACCATCACCATTCCTCATGTTGAAGGCCTACCTCCTAATGCAGAATCC ACCTCAGATGTGCCTTACCCTTTAGCAACACACATCATGACTGCCATGGATCTAACACAGCCTGATATAGAAGCTCATCT CTGCAACCTCAAACCTGACATTGTCCTCTATGATTTCACTCACTGGATGCCAAAGTTGGCTAGAGGTTTGGGCATCAAAG CTGTGCATTACTGTACTATTAGCTCTGTCATGGTGGGTTACACTCTCACCCCAGCAAGGTACCATAGAGCAACCAACCTA ACTGAATTTGACATCATGCAGCCTCCTCCAGGGTACCCTGGTTCATCCATCACTCTGCATGCACATGAAGCACGAGCCTT TGCTGCAAAAAGGAAAGAAACTTATGGCAGCAATGTTCTTTTCCATGATCGCCAGTACATTGCTTTTACTGAAGCTGATG CGTTGGGATACAGAAGTTGCAGAGAAATTGAAGGACCTTACCTTGATTACATAGAAAGCCAGTTCAAGAAACCTGTGCTT CCCTCAGGACCAGCTATACTGGAGCCACCAAAGTCTGGTTTGGATGAGAAATGGGCTTCATGGCTTGCAGGGTTCAAACC AGGTTCAGTAGTTTATTGCTGTTTTGGAAGTGAATGCAATTTAAGGCCAGATCTATTCAAGGAACTAGTGCTTGGTCTTG AGCTCACAGGTATGCCATTCTTGGCAGCTTTGAAACCCCCCTTTGGGTTTGAGTCTGTTGAAGCAGCACTACCAGAGGGG TTTCAAGAGAGGGTTAAAGGAAGAGGGGTTGTGCATGGTGGATGGGTTCAGCAGCAATTGATTTTGGAACACCCTTCTGT GGGGTGCTTTGTTACTCATTGTGGATCAGGCTCTTTGTCAGAGGCATTGGTGAATAAGTGTCAATTGGTGCTGTTACCAA ATGTTGGTGACCAGATCCTCAATGCGAGGATGATGGCCAACAACTTGCAAGTTGGGGTGGAAGTGGAGAAAGGTGAAGAA GATGGATTGTATACTAAGGAGAGTGTCTGCAAAGCTGTGAGCATTGTGATGGATGATGAGAATGAAACCAGCAAAAAAGT CAGGGATAACCATGCTAGGATTAGAGAGACACTGCTCAACAAAGATTTAGAGTCTTCTTATATTGACAATTTCTGCAAAA AGCTTCAAGAGCTTGTTGATGAAAAACCCAACTTTTGATCAGAGCAATGCAAGTTGTGCTTGGTGATAAATAATTTAAGT TAGATTGGTCTCTTTAGGATTCACGTGTTGTGCCATGTGTGTTATAGATATGTGAATTGCATTGGTTGAGATTATGTGGT CAATGGTCATTGCTCATGCAGAGTTGTTTAAGCCTAAAAGTTCAATTCAAGCTGTTCTTGCATTGTGTGCATGTAATAGT ACTGAGCTTGTAAACTTTTTCTTGTGTAATAAATGTGTTACTTCCAAATTGTCCCAAAGAATAGGATCTGGTTCCCCCCT GCACCTGGACATGGTGACAACTAAAATGTCCAATCATGTCCAGAACTGATATGTATCCCTTTCTTGTGTTATAAATGTGT TACTTCCATATTGTCCCATAGAATAGGAACTGGTTTTTCCTGCACCAGCAGATGGTGATAACTAAAATGTTCCATCATAC CCAAAACTGATATGTAATTCTCTGCTTTGATTAATCGAAAGGT

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0257500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATTCACCTTCTTTGAACATAGCAATGTATCCATGGCTAGCTCTTGGTCATCAAACTGCATTCATGCAACTATCCAA CAAGCTAGCCAAAAAAGGCCACAAAATCACTTTCTTCACCCCCCCAAAAGCACAAACCAAGTTAGAGCCATTCAATCTCC ACCCTCATCTTATCACCTTCATCACCATCACCATTCCTCATGTTGAAGGCCTACCTCCTAATGCAGAATCCACCTCAGAT GTGCCTTACCCTTTAGCAACACACATCATGACTGCCATGGATCTAACACAGCCTGATATAGAAGCTCATCTCTGCAACCT CAAACCTGACATTGTCCTCTATGATTTCACTCACTGGATGCCAAAGTTGGCTAGAGGTTTGGGCATCAAAGCTGTGCATT ACTGTACTATTAGCTCTGTCATGGTGGGTTACACTCTCACCCCAGCAAGGTACCATAGAGCAACCAACCTAACTGAATTT GACATCATGCAGCCTCCTCCAGGGTACCCTGGTTCATCCATCACTCTGCATGCACATGAAGCACGAGCCTTTGCTGCAAA AAGGAAAGAAACTTATGGCAGCAATGTTCTTTTCCATGATCGCCAGTACATTGCTTTTACTGAAGCTGATGCGTTGGGAT ACAGAAGTTGCAGAGAAATTGAAGGACCTTACCTTGATTACATAGAAAGCCAGTTCAAGAAACCTGTGCTTCCCTCAGGA CCAGCTATACTGGAGCCACCAAAGTCTGGTTTGGATGAGAAATGGGCTTCATGGCTTGCAGGGTTCAAACCAGGTTCAGT AGTTTATTGCTGTTTTGGAAGTGAATGCAATTTAAGGCCAGATCTATTCAAGGAACTAGTGCTTGGTCTTGAGCTCACAG GTATGCCATTCTTGGCAGCTTTGAAACCCCCCTTTGGGTTTGAGTCTGTTGAAGCAGCACTACCAGAGGGGTTTCAAGAG AGGGTTAAAGGAAGAGGGGTTGTGCATGGTGGATGGGTTCAGCAGCAATTGATTTTGGAACACCCTTCTGTGGGGTGCTT TGTTACTCATTGTGGATCAGGCTCTTTGTCAGAGGCATTGGTGAATAAGTGTCAATTGGTGCTGTTACCAAATGTTGGTG ACCAGATCCTCAATGCGAGGATGATGGCCAACAACTTGCAAGTTGGGGTGGAAGTGGAGAAAGGTGAAGAAGATGGATTG TATACTAAGGAGAGTGTCTGCAAAGCTGTGAGCATTGTGATGGATGATGAGAATGAAACCAGCAAAAAAGTCAGGGATAA CCATGCTAGGATTAGAGAGACACTGCTCAACAAAGATTTAGAGTCTTCTTATATTGACAATTTCTGCAAAAAGCTTCAAG AGCTTGTTGATGAAAAACCCAACTTTTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0257500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSPSLNIAMYPWLALGHQTAFMQLSNKLAKKGHKITFFTPPKAQTKLEPFNLHPHLITFITITIPHVEGLPPNAESTSD VPYPLATHIMTAMDLTQPDIEAHLCNLKPDIVLYDFTHWMPKLARGLGIKAVHYCTISSVMVGYTLTPARYHRATNLTEF DIMQPPPGYPGSSITLHAHEARAFAAKRKETYGSNVLFHDRQYIAFTEADALGYRSCREIEGPYLDYIESQFKKPVLPSG PAILEPPKSGLDEKWASWLAGFKPGSVVYCCFGSECNLRPDLFKELVLGLELTGMPFLAALKPPFGFESVEAALPEGFQE RVKGRGVVHGGWVQQQLILEHPSVGCFVTHCGSGSLSEALVNKCQLVLLPNVGDQILNARMMANNLQVGVEVEKGEEDGL YTKESVCKAVSIVMDDENETSKKVRDNHARIRETLLNKDLESSYIDNFCKKLQELVDEKPNF

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	3	256	254	3.6E-34	–
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	5	437	433	6.28E-93	–
CDD	cd03784 View details on cd03784 Search for proteins/transripts with this domain View external data on cd03784	6	433	428	1.96914E-60	–
PANTHER	PTHR11926 View details on PTHR11926 Search for proteins/transripts with this domain View external data on PTHR11926	214	382	169	1.8E-17	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	257	437	181	3.5E-50	–
Pfam	PF00201 View details on PF00201 Search for proteins/transripts with this domain View external data on PF00201	331	417	87	1.8E-11	IPR002213 Show description in modal box View details on IPR002213 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00375 View details on PS00375 Search for proteins/transripts with this domain View external data on PS00375	332	375	44	-	IPR035595 Show description in modal box View details on IPR035595 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016758 View details of GO:0016758 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016757

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0257500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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