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LotjaGi6g1v0263500.1

Overview

Field Value
Gene ID LotjaGi6g1v0263500
Transcript ID LotjaGi6g1v0263500.1
Lotus japonicus genome version Gifu v1.2
Description Evolutionarily conserved C-terminal region 2; TAIR: AT1G48110.1 evolutionarily conserved C-terminal region 7; Swiss-Prot: sp|Q0VCZ3|YTHD2_BOVIN YTH domain-containing family protein 2; TrEMBL-Plants: tr|A0A0B2PYU6|A0A0B2PYU6_GLYSO YTH domain family protein 2; Found in the gene: LotjaGi6g1v0263500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57725451..57730696) extracted from Lotus japonicus Gifu genome v1.2.

GCCCATTCTTGAAACATCAGGGGCCCAAACTGGAATTAAGCCTAAAAAAAAAAAAGGTATGAGATACCAATATACATCAA ATTATTGAATGAAGAACAAACAATAGCAGCAAATTAGCAAATAGTAGTAAGCAAATTCCTGAACCAAGAAAGCGAGGGAA TCATCGCCCATTTTCAACAAGTACTCATAGAGCAATACTACTCTCACATCCCGGTCACATTACTTCCACGACCTCCCACC AATCACATTATACGCAGTCACCACAGCGACGGTGACTTTATCATCATGCGTGCGCATCAAGCACCCACAACGACGACGTT TCACTCCCCAGTGGCGTTTTCGTTATACCCGAAGCGGCACAAGGGTATTTACGGAAACTGCAAAACGCTTCGTATCGTAA ATAGTGAAGAATCTCTCTCTCTACAATCTCTCTCTCTCTTTCTCTTTCTACTCCACTTGTTTCTGGTTTTTCTCTGAATG CTTCACCGTTTCGTGTTCATGGTTAGGGTTTCGTGATTCGATTCACAAGATGTTGCAGAACCCCTTTGCTTCATCGCTGA GCATGCATTGATTGATTTTCTCCTTCTTCGTTTTCGGGTAATTAATTCGATTCTATCTCGGTTTTCTCTGCATGCGAATT CCTCATTTCTGTTTTCTGATTGAAGTTCTGTTTCATCAATGCGGTGTTGATAATGCTTGGGTTTTTGTGGTTTTGCTTGT GTGTTTGTTTGTTTGTGGTGGAGCACTTGATTTTGCTTGTTGTTGGAGTTGGATTTTTATTGTTTGCTTTCGTTGTGGAA TTGATTTCTGTATTTCGATTTTGGAGGTTTTGAGTTGGATTTTGTGTAATTTGTAATAGCTGAAATTGAAGGGTGTCTGT ATTGGCTCCTCCACTGAGAAGCATTTCGAAGATTTGCAATTAGGGTTCAGGGCAAATTTCTGGCACTTCAGTTTAAGATT AGTTAGTTGTTTGATTGGTGGAGTGATATTTGATTATGAAACCCTTTTACCAAGGGGCTTTTTCAATTCTATTGGGATGC TGGTGATTGTAGTTCATTTCTGCTGTCTTTCGTGTTTGTTGAGTCGATTGATAAATGCCCGCCAATAGTGTTTCTGCATT TTGTATCTCTGATGTTGTTTTCTATCATTTAGTGGTTTTTGAATTGTTATGTGTGCTTATGTTTCGTTTGTCGGACTGTC TACAGTGGTGGCTGTTCTGGTATGGAAACGTATAATGTTCCTGAAACTAGAAACCCGGATGCTTTCTTGGTAATTCCTTT TATAATGTTTTTGTAACTTGTTGTCCCTTTAACTTTGATGTATCAAGATTCCTTCGATGATTTTTTATGTTCTTGTAATT ATGATCATTTTGTATGTCTTATCACTGAGGTAGGACTAGGATGATAGTGAATAATGTTGTAACTATATCATTTTGATTTT TTACTTAGGTTGAAGGTGCTGATATAAACTCACACTTCCCAAGCCCAAATCTCGAGCAAACTGAAGTCATGATTAACGAA GGAACCTCTGAGTTTGTTGTTGACCAGAACATGTATTACCCTGCTGCCACCAATTATGGTTATTACTGTACAGGTAAAAT TTAAAACGTTGATGCTTTTTGGTTTGATGGTACTTTATATATGCATTGTATGAATGGTTTTTTACTTGTTGCGTCTAGGA TTTGAATCACCCGGGGAATGGGAGGACCAGAATAGGATTTTTGGTGTAGATGGTCCGGATATTCAGTACTCGGTGAGTCT TACACACTTTTTTTCTCTGTCCTATTTTGGTTCGTGGCTGATTTTAACGTTTCCTTCTTTCCTTATTTTACCAGGGTGCA CAAAATGAAAGTTTGCCATATGTATATTATAGCTATGGATATGCACAGTCTCCATACAATCCATATAATCCTTACATTCC CGGTGCTGGGATAGGAGTTGATGGCACATATGGTGGGGAACAACAATATTACACCCTCCCCAATTATCAAACCGCTGTTT CTTCACCTGGTTATGGTCCCTTTGTTCAACCAGAATTTTTTCCCGATAGTTCTGCAAACTCCTTGAATGGAGCCAGTGCT TCTGTCAGTAAACCTGATGGAAGAGGTTTTAAACCAAAGTTCAATTCAGCTTCTGGTAACTTTTCTAGGAGCTCTTCAAA AAATTTATCAAATCAGACGAGTTACTTGGCCAGGGCATCAGAAGGGCCAAGAGCTCATGATGGTAGGAAGCAAGATCTGA CACATGCTAGTGTTTCTGGGAGTAGTTTTCAAAATTTAGCTTCATCAGCCATCAATCAGGTAGGAATTTCCCCCCTTTTT AGATTACATTTAAATTGATGTTTGTCCTGGAAACTTTTGATGTCTGTTAATTGAGAATCAGTGTTTCTATGAGACTATGA CTATGAGTGACATTAGTTGCTGCTACTAGTACTTAGTAATATGAACAGCATGTGGAGGGGATGGCTAGTTAGCTATAAGA TGGTTAATGGCTTTACTGTTCGGTTTTTTAGGATAGAATTCCTGGCGCCTCAATCCAATTTGTAGATACTATTTTAAATG GGAATGTTATGTCATTTTATCAGTTGAAAGTAGCTTCTCCTTCAAATGTTGATTTTTCTGATTTTGGATTTCTTGCTAAT GGACAGACTGCAGTCAGTAAACCTAGGCCGAAGGCTCAGATCAACAAAGTATCAAGCGATGAAAATGGAAGCTCTGATAT ATTAAGCGAGCAAAATCGAGGCCCTAGAATTAGTAGATCAAAACATCAGCTCTGTGTGAAAGCTTATACAACTAAGGCCG GAGATGGTAATGAGCAAGGGAACATAATCATTTGTCCTGATCAATATAACAAGGAGGATTTTCCTCTTGACTACAAAAAT GCAAAGTTTTTCGTTATAAAATCATACAGTGAGGATGATGTGCACAAAAGCATTAAATATAATGTTTGGTCATCTACACC TCATGGAAACAAGAAGCTAGAAAATGCTTTTGAGGATGCAAAGAAAATAGCTGCTGAAAAATCTGGAATCTGCCCTATCT TCCTATTTTTTTCGGTGCGTTTTAATTATTATGACATGTTAACAAGTTGTAATCTTTCTTTTATATCTAATAGCTATATG CAAGCTAATCTCCTCACCTTCTGTTCATCGTGTTGACTATTCCTTTCCTTTTCACCCTCTTTTTCTCTATGCAGGTTAAT GCAAGTGGTCAATTCTGTGGAGTTGCGGAAATGACTGGTCCAGTTGACTTTAATAAGGATATGGACTTTTGGCAGCAGGA TAAATGGAGTGGCAGCTTTCCAGTAAAGTGGCATATCCTAAAAGATGTACCAAATGGAAATTTCAGGCACATTATTCTAG AGAACAATGAAAACAAGCCAGTGACTAATAGCCGAGATACACAGGAGGTATATATTATTTCTACGCGGAGTTCTATTGTT ATGCTCATAGATAGCAACTTTCTCTGTTAAAATTTCACTTTTTTGCCTGATTAGTTGTTGCATTGAACCTGTGCTGTCTT TGAGGAGTTTGCTGTTATTTATTAAGTGTCACGTTCTGTTTTATCAATTTCTTAGTTTCTTGATGATGCAGTTGATTGAT TAAAGCAATGAATAGTTGTTGGATTGCTTGTCTTCACACACATGCACACTTGAGTAACAACAGTCAGTGTTTGAACTGGG TTTAAAATTTTAGTGGAGTTAAAACTCTTTAAGAGTTGAACAACTGTGGTTATAATTGTGTAGATGCTTGTATGATGGGT AGATTTTTTGAGTTAGTTGTCTTGGTACTAGAATTAATTTACATTATTGTGTGTTTGTTGTTTTTAAGTATACATGATTT TCTACAAGAATTTATTCACTTGGACTTATAAGTAAATTGTTTTTCATTTACATTTTAGTTTTATTGTTGAATTAAGCTAT TACAGTAAAATTTTGAGTTTGTTTAAGCCCATAATCAGCTATGTGTCTGTTTCTTTAATTGTAATATTGACTATTAAATG TCCCTTGCTCATGTTCAGATAATGTATTGGAAAGGATTGGAAATGCTGAAAATTTTCAAAAATCATACTTTGAGGACATC TTTGCTTGATGATTTTATGTACTATGAAAACCGTCAGAAGATCCTGCAGGATGAGAAAGCCAAGTATCTAACCAAGAGTT TTGAAAGTCCATTGTATATACCAGCATTGGAAACTCCTCGAAAGCTGAATTTTATGGTTGATATGCCTTCAGGACACGAT GAGAAGAATTCCAAGCTTACGGATGATTTTGAAAGTGCGAAACAGAATTCAGTTTCAACTCCTGAGCAGATTGTTAGTAA TTCTGATGCCACAAGCACCAAGCCTGTGGATGTGCAGACTGAGAAATCTGCAGCTAATAAAAACGATATTTCCTCCATCT TAAAGATTGGTTCAGTCACTATTACCCCTAAAGCGGTTGAGACTAAACAGTCTGGTAAAGAACCATTTGATTTTCTTACA GTTGGCTCAATGCAAGTCAAAGTTAATGGGCTTGCTGCATCTTCTGGTCTCTTGAAGGTTGGCAGTATCCCACTTGATGC AAAAGCATTACAGCAGGAAAAAGTAGATGCTGCTGTTAAACGTGAATCTCTACCTTAAATGTGTACATGCATTTCATGGC ACAGTCTGGGATCTAGTGCACTTCGGTAAAGTTGGACCAATGTTTGTCCGATTGTATGATGCAATTGGGAAGTTGAGTTT CCTTTCGATCTTCCATTATTGATCTGAATTTTTCTAGTTTATTTGCTAATGATGATTTTATACAATGGATGTCATGGGTT TTTGAGTTTGAGCAGTGGTGATTTTGGTGACTCAAGCTTCTGTATCAGTATAACAGCGTGATCCTCTTTTTTGCATTTCG CCTGTTGGTGCTCAAGATCCATAAGTCAGTTTTCATTGCGATTCATCGATCTATGTTGAGGAAGCCTGCAAAACTTCTCA CCGTTTTCATTTTGTGATTCTGTTTTATTAACAAAATCTCATTTCTGCTCTGTTGTTTAGGATCTGTTTCATTTTGATTT GGTTTAAAGATGAGGGAATGTAACAAATGACTGAATGAGAGATTATTGTTTAACATGATAGCAGTACATCTTTATATGGC TTTTCTTTTAGTGTCCTGTTTTGTGGAATCAAGATGTTTCTATCTTTACCTTAATGCCCTTTGCTAATAATTCCAGTGGA AGTGTTTCATTCTTCGATGAGCAGGGTGTCAATTATTTATACCAAC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0263500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAACGTATAATGTTCCTGAAACTAGAAACCCGGATGCTTTCTTGGTTGAAGGTGCTGATATAAACTCACACTTCCC AAGCCCAAATCTCGAGCAAACTGAAGTCATGATTAACGAAGGAACCTCTGAGTTTGTTGTTGACCAGAACATGTATTACC CTGCTGCCACCAATTATGGTTATTACTGTACAGGATTTGAATCACCCGGGGAATGGGAGGACCAGAATAGGATTTTTGGT GTAGATGGTCCGGATATTCAGTACTCGGGTGCACAAAATGAAAGTTTGCCATATGTATATTATAGCTATGGATATGCACA GTCTCCATACAATCCATATAATCCTTACATTCCCGGTGCTGGGATAGGAGTTGATGGCACATATGGTGGGGAACAACAAT ATTACACCCTCCCCAATTATCAAACCGCTGTTTCTTCACCTGGTTATGGTCCCTTTGTTCAACCAGAATTTTTTCCCGAT AGTTCTGCAAACTCCTTGAATGGAGCCAGTGCTTCTGTCAGTAAACCTGATGGAAGAGGTTTTAAACCAAAGTTCAATTC AGCTTCTGGTAACTTTTCTAGGAGCTCTTCAAAAAATTTATCAAATCAGACGAGTTACTTGGCCAGGGCATCAGAAGGGC CAAGAGCTCATGATGGTAGGAAGCAAGATCTGACACATGCTAGTGTTTCTGGGAGTAGTTTTCAAAATTTAGCTTCATCA GCCATCAATCAGACTGCAGTCAGTAAACCTAGGCCGAAGGCTCAGATCAACAAAGTATCAAGCGATGAAAATGGAAGCTC TGATATATTAAGCGAGCAAAATCGAGGCCCTAGAATTAGTAGATCAAAACATCAGCTCTGTGTGAAAGCTTATACAACTA AGGCCGGAGATGGTAATGAGCAAGGGAACATAATCATTTGTCCTGATCAATATAACAAGGAGGATTTTCCTCTTGACTAC AAAAATGCAAAGTTTTTCGTTATAAAATCATACAGTGAGGATGATGTGCACAAAAGCATTAAATATAATGTTTGGTCATC TACACCTCATGGAAACAAGAAGCTAGAAAATGCTTTTGAGGATGCAAAGAAAATAGCTGCTGAAAAATCTGGAATCTGCC CTATCTTCCTATTTTTTTCGGTTAATGCAAGTGGTCAATTCTGTGGAGTTGCGGAAATGACTGGTCCAGTTGACTTTAAT AAGGATATGGACTTTTGGCAGCAGGATAAATGGAGTGGCAGCTTTCCAGTAAAGTGGCATATCCTAAAAGATGTACCAAA TGGAAATTTCAGGCACATTATTCTAGAGAACAATGAAAACAAGCCAGTGACTAATAGCCGAGATACACAGGAGATAATGT ATTGGAAAGGATTGGAAATGCTGAAAATTTTCAAAAATCATACTTTGAGGACATCTTTGCTTGATGATTTTATGTACTAT GAAAACCGTCAGAAGATCCTGCAGGATGAGAAAGCCAAGTATCTAACCAAGAGTTTTGAAAGTCCATTGTATATACCAGC ATTGGAAACTCCTCGAAAGCTGAATTTTATGGTTGATATGCCTTCAGGACACGATGAGAAGAATTCCAAGCTTACGGATG ATTTTGAAAGTGCGAAACAGAATTCAGTTTCAACTCCTGAGCAGATTGTTAGTAATTCTGATGCCACAAGCACCAAGCCT GTGGATGTGCAGACTGAGAAATCTGCAGCTAATAAAAACGATATTTCCTCCATCTTAAAGATTGGTTCAGTCACTATTAC CCCTAAAGCGGTTGAGACTAAACAGTCTGGTAAAGAACCATTTGATTTTCTTACAGTTGGCTCAATGCAAGTCAAAGTTA ATGGGCTTGCTGCATCTTCTGGTCTCTTGAAGGTTGGCAGTATCCCACTTGATGCAAAAGCATTACAGCAGGAAAAAGTA GATGCTGCTGTTAAACGTGAATCTCTACCTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0263500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

METYNVPETRNPDAFLVEGADINSHFPSPNLEQTEVMINEGTSEFVVDQNMYYPAATNYGYYCTGFESPGEWEDQNRIFG VDGPDIQYSGAQNESLPYVYYSYGYAQSPYNPYNPYIPGAGIGVDGTYGGEQQYYTLPNYQTAVSSPGYGPFVQPEFFPD SSANSLNGASASVSKPDGRGFKPKFNSASGNFSRSSSKNLSNQTSYLARASEGPRAHDGRKQDLTHASVSGSSFQNLASS AINQTAVSKPRPKAQINKVSSDENGSSDILSEQNRGPRISRSKHQLCVKAYTTKAGDGNEQGNIIICPDQYNKEDFPLDY KNAKFFVIKSYSEDDVHKSIKYNVWSSTPHGNKKLENAFEDAKKIAAEKSGICPIFLFFSVNASGQFCGVAEMTGPVDFN KDMDFWQQDKWSGSFPVKWHILKDVPNGNFRHIILENNENKPVTNSRDTQEIMYWKGLEMLKIFKNHTLRTSLLDDFMYY ENRQKILQDEKAKYLTKSFESPLYIPALETPRKLNFMVDMPSGHDEKNSKLTDDFESAKQNSVSTPEQIVSNSDATSTKP VDVQTEKSAANKNDISSILKIGSVTITPKAVETKQSGKEPFDFLTVGSMQVKVNGLAASSGLLKVGSIPLDAKALQQEKV DAAVKRESLP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12357:SF84
1 640 640 0.0 –
PANTHER
PTHR12357
1 640 640 0.0 –
MobiDBLite
mobidb-lite
167 227 61 - –
MobiDBLite
mobidb-lite
186 209 24 - –
MobiDBLite
mobidb-lite
243 281 39 - –
MobiDBLite
mobidb-lite
243 276 34 - –
Gene3D
G3DSA:3.10.590.10
307 479 173 5.1E-71 –
ProSiteProfiles
PS50882
323 464 142 51.615
IPR007275
Pfam
PF04146
324 465 142 7.7E-39
IPR007275
MobiDBLite
mobidb-lite
540 563 24 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0263500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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