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LotjaGi6g1v0265200.1

Overview

Field Value
Gene ID LotjaGi6g1v0265200
Transcript ID LotjaGi6g1v0265200.1
Lotus japonicus genome version Gifu v1.2
Description Short-chain dehydrogenase/reductase family protein; TAIR: AT4G20760.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q7Z9I2|YCP9_SCHPO Uncharacterized oxidoreductase C663.09c; TrEMBL-Plants: tr|C6TM12|C6TM12_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0265200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57897517..57902937) extracted from Lotus japonicus Gifu genome v1.2.

GGTTAATCTCATCATCATCCAGGGAAGGTTCACGTACAACCTGGAAGAAAGAACTTGGAAGAAGAAAAAAAAAAGACAGG AACGCAGGGATGGTTATGAACAACTAGAAGAAGGGAAAAAGTAAGCTATCTTTCCATGAAAGATCATAAAGTTTCGATCT TTGCTTGATTGGGTATAACCTATTCATTGTTCTCTCAATTTTCCTCATTAACCCTTCATATGTATGCTGCTACAATCATG GATCTGATCTCAGCAAGCTCGACGCCACCCATGAACAACCAAGTTCCTAACAGAAGCTTCGATGGCGACAAAGGCACCAC CTTTTGCGGTGGGGATGGTGGTTCATTGTGAGGGTCAGTGGTGTTGGTGGAGAAATCCAAGTCATGAAGAACCAGATCCA GAGAACCTTAAGCAGAGGAATTTCCAGAGAAGAATGCTTTTACAACAACCAAAACCTCCACCGAACCCACACTCATCCCC ACCGTAACTCAGAATAACCCCCACCGCAACCCAAACCAGGCAACCACAACCCACTTGAACCCAGAACCTCACCCCATCCA CAATGAAAATCGACCCCCACCCCAGATCTGAAACCCAACCCGCAACCTCATTGTTAAGAAATAATTGTTTAATTAAGAAA ATAAAATTTTTGAATTATTTTTTTATAAAAAAACCGGAAAACCTACACTAACAGGCAAAAAGTGACTTGTACAACTATGC ACAAGTTTTTACTTATCTATATTAAAGATTTCCGGTATAATAATAAACAAAATCATGTTTAAGCAAACAACCAAAACGGT GCTTACAATTTGCAACTTCCAGAATTCAATTGTGAACAAGGTTGTTGTGTGTCACTAAATTCACCAACAAATCACAACAC CTTTCACTAATGACAATGGTTTCATTGGATTGTTTTCTTGGTTACAAACCAGCCACGCTTCATGTTACAAACAGATAAAG AGCTTTCTCTTCCATTTCATGTGATGATACATACAATGCTATTGCCACCGATCCACACCACTTCCATGGCATCACGTTCC CTGCGGTTTCTGTCACTGACCCGAAGAGCCTTCTCTTCTTCTTCTCATGAGGGTCGGGTTTCATTGGTTCAAGGAGCTTC CAGAGGCATTGGCCTTGAATTTGTAAGATTCTTACTTCCTTATGTTACTTTCACATCATCAATGGTTTCTTACAATCTGG GCACTCTCCCACATTGTCAAAACTGTTCCTTCTTTCATGGGCTGTGTTTTTTGTTTCTACTGCAGGTGAAACAGCTGCTA GAGAACAATGAGAAAGAGCATGTTGTTGCTACTTGCCGTAATCCTAGTGCCTCAACTGGGCTTTTCCAGCTCAAAGATAA ATTTGCTGATCGTCTTAGTATTTTGCAGTTGGATCTCACTGTTGAAAGTTCCATTGAGGTAATCCTTCTTCTCCTTTTTA ATTGTTTTCATTCTCTTTCTGATATCAATATTAACAGAAAGCATGCATTTGGACTAGATGCTATGTAAGTTAATTTGAGT GTATTAGGGTGAATGAGCTAAACTTGTATAGGGAAAGTGGAATTGGGGTGATAGATGAGCGTGGGAAAGTACAATTTCCC TTTCAGCCTGGTAACATAATTGTGAAATTCATATTCTGTTTTAGGCATTAGGACAGGTCTGAGTTTGGTTTACATAATTT CAAAACTCATTTGTGTGTTAATGTTTTGTGTATTTCACAAATGTTTTTTCAGGCATCTGCATTGTCAATAAAAGAGACAT ATGGTCATCTTAACCTTCTCATTAATGCGTCTGGCATTCTTTCAATACCTGAAGTATTGCAACCAGGTAGTGATTTTGTT TCATTCTTTGGCTGTGGACTTGGAATGTCCTCTTCCTCTGCCTATTGTAGCATACAGTCTTGTCAAATTAAGATCCTAAA ATCTTTAAAACTATTTTTTATTCATGAATTCCAACCCTCTTCCACCTTCTGCAAAATAAGTATTTAAGTTAAAAGAACAT AAATTTGTAACAGATTTACCTGTGAGAAAAAATAGAAAAGTAAGAGCTTGCCCCTGTAAAGAAGGGTGTGTGTAAGTAAC GGGGAGTAGTGATATTTAACTGTGAGATAAGACTCTACTATCTTATTTTAAGCTTATGTTTCCTACAAATACAAGGCAAT TGATTCCTTATTTATCTATACTATACAGAAACAACATTGAGCAAAGTGGAGAAGTCATCTTTAATGCTTGCATATGAAGT TAATGCTGTGGGTCCTATCTTAGTTATCAAGGTAAAATCAATCTAGTTTTCATTAGAAAAGTTTTTTAGTTGTTTATCTA TTTAGGATGATGTTAGAACATATGGGTTCTTTATGTGTACGAGTTTATAGAGGCCTTTCTGTGTTGTAGGAAGATATGGA TGTACACATGATAAATAGCTAATGTGTTTGTTCTAATGATTATTGTTTACTGTTGTTAGTAAATTCTGTAAACAAATGAT TAACTTAGTATATTGGCTCCATGAAAATATATTTGCTGATAAATCATTACTATTTACTAAAAACCAGGGTAATTAAAACT CATGCTTGTTTACAATAATTGATGATGCCACCCATACATGTCACTGGAATGCTTATTTGGTGTGATGGTCAATATGTAAA GTGATATAAACCTAATGCAAAGTTATAGCATAAAATTTGTGTCTGTGCATGAGCCAGGGCACTTGTTCCATGAGATGCAC ATGATGAATATTTGCTGAAAAACTCAACCAAGCTTTTTGGTCAACAGCTATCAACAGATATGGAGCATGTGTATTGGGTT CATGAGAAGAAACTGTTTTATAAATCCTCTTACATTTCTATGCTCTCCAGCTTATTTCATAAATACTCTAGTCATGATGA GAACGAAGAACCTTGTTGGACTCCTTACTGAGATCCTGTTGGCTCCTTTCTGATTAAAGTAGTTCACCCAGTTCTGCATT TCATGCTAAAATGATTAGTTTTGCCTTCCAATTTCCCACAATATTTATCATGGGAGCATTTGCTTGAGTAATATTTGTTC TTCTAGGCCTGTGAAGAAATAAAGAGCTGAAACTGTTTTCCTTTGACATTTTAGCTTATTTCTTTAATTTATAGATTTAT GCAATAATTACAACACTTTGTTATTGTTTCTGTCCAACTTTGTATGTGTTTCTTTACCTTTGCTTTAATGAATGGACATG TTTTCAATAATTTGAAACAATGTTTATTTATCAAATTCCATGATTCTTTAAGCAGCATATGTGGCCTCTTCTAAAAGTTG GAGCTGGCTATGGGACTGAAAAAAGTCCTGCAGTTGTGGCTAGTTTGAGTGCAAGGGTTGGATCTATCGGGGACAATCGT CTTGGTGGCTGGCACTCTTATCGAGCTTCAAAGGCTGCTCTTAATCAATGTATGGCTTTCTTTTGTATGATCATTGTCAT GTGATATTCAATATGATGAATCTAAGGGCCTCATTGGACCTTGCATGTGTGCTCTGATTATATATAAAATGTGGTTTCAT CATGATCCAACTGCAAAATTCATCATCAGATTGTAACTTGCAAATTGTTGGATTTCAAAAACATAAATACTATAATGATA TTATTTTGTAAATCATACTTTGTGCATTTACATTAATCACTCCAGAATCCAGACGAATAAGATATATCTTCATTTGATAG TGCTTGCATAAGACCATGCTTCTTTTCTTGTGATTACCAATTACTCTGTAAGCTCTGTTCATATTTTAGTTGCATTTACC TTGAAATGGTGAAGAATAAATAAAAAATGAATTTGTAATTTTCCAAACTGTTTGAAATGGTAATCTTTACGAGTTTTTTG CTCCCTTATATTCTGACAGTATCAAAGACTATCTCGACCGAATTTGCAAGGAAGAAAGATCCAATCGCATGCATTTTACT GCATCCTGGTACGGTTGACTCAGATCTCTCCAGGCCATTTCAAAAGAATGTTCCCAAAGAGAAGCTCTTCAGCAAAGAGT TCTCAGTCCAAAAGCTTTTAAGCATCATTAACAATGTGAAGAGGCATGACAATGGCAAGTTCTTTGCCTGGGATGGTCAA GAAATTCCTTGGTAACCCTATAATACCTTTACCTAACAACACATGTGTGAAAGATACCAGTAATAAGCGGCAAAGGTGCG CTAATGAAAGTATGACTACAAAAAATTCGTTGAGTTTTGTTCCAATTTTCACCTCTTCTTCTCCCTGTGAATCATACTTA TTGTTTATTGATATTCGTTTTAGTTCTAGGAAACATAGGCACTTCAAAATGCTTTCTGCACTGGTGTTGATACTTTTTGG ATCCTCAGATACTCTATACATATTAGTTTGTATAGTATTTGCAATGAGTTCAAACTTTGCTCTTCACTTTTTTCTCTCAA TCATGAATAAGTTGTGTTATATTTATAAGGACTTATGACTCATTCCCATTTTTAAAGTTTAAACATAAGATAATTGGTAG AAACCGACCCCCTATTAAGAAGGTCTATGAGAGGAGAAATATGAAAGGACTTGTGTATCCAACTGCTGAGGAGGGATGTT AGTAACCAGTTGTAAGGTATAGGACTTCAGTTCCACACTAGAAACATGAGATTCTAGTTGGGGTTTTCTCCAACTAGAAA GGCTATCTTTTGTGGTATGGTTCGTCCAAGGTTCTGACTTCTGGTCAAGATTGAACTGAAAATTCTGAGCAAATTTAGGT GGACGGGTTGATGTGAATAGGTCTTAGTCCACATTTGGAAGAATTTATTTGCGTTTATAATATAACATAAACATTTATCT TGTTTGGGTAAACATATAAAAATAGTTTATGACATACCTATAAGTCATCTTAAGCTTATTTCCATAACCTGCTCAAATTA GTGTATGACCTACCTGCTCATTTTTAGTTTATTTTAAGCTTCTCATTAGCATTTAATTATGTTGTTTACCCGAATACACT CTTATTTTGAGATTTTTTGAGAAATCATTTCCACTTCTCATTGTTGGAGCCGGCAGTATTAATCCTTTATTTTTGTGATG ATGAGGGATTGTTGGAATTGAAAATGGTTAGATTCTGCTGGATTTGACTCTAGTGCAAACTTTGCACTATGCTGACCAAC TTCTTACCAATCAAATGGTCACAATAGAATCAGTGTACTTTTCTACAAGCATTTAATTCCACAGCATAAAGCAAGACTTT TACTGCAATCCACAAAAGAAAAGGACAAAAATAAGGAAACCACTCTGGCACCCTTCTCCAAAGGAGAGTTATATAAAGTT CAAATGGGATATAATGTGGCACTTTGACTTATGAAAAGTAATATTAAGATGGAGCTTGAATTAGAAAAGTAGTTTAATAA AATTATGCTTAAATTGACACAATACAACAGAAGTCCTCAAAGCAACATAGGTCTGTTACAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0265200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTACAAACAGATAAAGAGCTTTCTCTTCCATTTCATGTGATGATACATACAATGCTATTGCCACCGATCCACACCAC TTCCATGGCATCACGTTCCCTGCGGTTTCTGTCACTGACCCGAAGAGCCTTCTCTTCTTCTTCTCATGAGGGTCGGGTTT CATTGGTTCAAGGAGCTTCCAGAGGCATTGGCCTTGAATTTGTGAAACAGCTGCTAGAGAACAATGAGAAAGAGCATGTT GTTGCTACTTGCCGTAATCCTAGTGCCTCAACTGGGCTTTTCCAGCTCAAAGATAAATTTGCTGATCGTCTTAGTATTTT GCAGTTGGATCTCACTGTTGAAAGTTCCATTGAGGCATCTGCATTGTCAATAAAAGAGACATATGGTCATCTTAACCTTC TCATTAATGCGTCTGGCATTCTTTCAATACCTGAAGTATTGCAACCAGAAACAACATTGAGCAAAGTGGAGAAGTCATCT TTAATGCTTGCATATGAAGTTAATGCTGTGGGTCCTATCTTAGTTATCAAGCATATGTGGCCTCTTCTAAAAGTTGGAGC TGGCTATGGGACTGAAAAAAGTCCTGCAGTTGTGGCTAGTTTGAGTGCAAGGGTTGGATCTATCGGGGACAATCGTCTTG GTGGCTGGCACTCTTATCGAGCTTCAAAGGCTGCTCTTAATCAATTATCAAAGACTATCTCGACCGAATTTGCAAGGAAG AAAGATCCAATCGCATGCATTTTACTGCATCCTGGTACGGTTGACTCAGATCTCTCCAGGCCATTTCAAAAGAATGTTCC CAAAGAGAAGCTCTTCAGCAAAGAGTTCTCAGTCCAAAAGCTTTTAAGCATCATTAACAATGTGAAGAGGCATGACAATG GCAAGTTCTTTGCCTGGGATGGTCAAGAAATTCCTTGGTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0265200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLQTDKELSLPFHVMIHTMLLPPIHTTSMASRSLRFLSLTRRAFSSSSHEGRVSLVQGASRGIGLEFVKQLLENNEKEHV VATCRNPSASTGLFQLKDKFADRLSILQLDLTVESSIEASALSIKETYGHLNLLINASGILSIPEVLQPETTLSKVEKSS LMLAYEVNAVGPILVIKHMWPLLKVGAGYGTEKSPAVVASLSARVGSIGDNRLGGWHSYRASKAALNQLSKTISTEFARK KDPIACILLHPGTVDSDLSRPFQKNVPKEKLFSKEFSVQKLLSIINNVKRHDNGKFFAWDGQEIPW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.720
37 306 270 1.0E-54 –
PANTHER
PTHR43544:SF12
53 306 254 2.1E-115 –
PANTHER
PTHR43544
53 306 254 2.1E-115 –
Pfam
PF00106
53 264 212 6.5E-25
IPR002347
PRINTS
PR00081
53 70 18 2.1E-13
IPR002347
SUPERFAMILY
SSF51735
54 306 253 1.55E-61
IPR036291
CDD
cd05325
55 306 252 4.4371E-91 –
PRINTS
PR00081
129 140 12 2.1E-13
IPR002347
PRINTS
PR00081
219 238 20 2.1E-13
IPR002347
PRINTS
PR00081
242 259 18 2.1E-13
IPR002347

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0265200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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