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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0265300 |
Transcript ID | LotjaGi6g1v0265300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Annexin family protein; TAIR: AT5G12380.1 annexin 8; Swiss-Prot: sp|Q94CK4|ANXD8_ARATH Annexin D8; TrEMBL-Plants: tr|A0A072V514|A0A072V514_MEDTR Annexin D8; Found in the gene: LotjaGi6g1v0265300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57905374..57906146) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTGGTTGCAGTTATAAGCACCTACAGGTATGAGGGAGATGAATTTGATGAGAATGTGGCCAATTCAGAAGCAAACAT GCTTCATCAATTGATTGAAAAGAAGGCTTTTAACGATGATGAAATCATTAGAATCTTTAGCACAAGAAGCAAGAAGCAGC TCTGTGTGACTTTCAATACATTAAAAAACATACATGGGACAACAATTATCAAGGTAAGATGAGTTTATACACTCTGTTCT CCATACAGAATCCAAAGATAAGAAACACATAAAACTATGGTAATTGCAGGGATTATCAGCGACTCCAATTGATGAATACC TCGGAGCATTGCGTACCACCATTCGTTGCATTAAGAACCCCCAGAGATACTTTGCCAAGGTAACAAAGGTCATGAAATTA ATTTATCAACTATTCTCTACCTCATAGTTCTTATCTCTGAAGCTTTTATTAAGCATGTATACATTGACTTGATTTAGGTG TTAGGGAACGCCTTGGATGATTTGGCAACTGAAGACGATGTTTTGAGCCGTGTTATCATCACACGTGCAGAGAAGGATTT AAAGGAAGTCAAGGATCTTTATGCAAGGAGATACAATGTCACCCTTGATGAATTGGTGGCTAGGAAGACATGGGGAAATT ACAAAACATTCATTCTAGAATTGTTAGGAAACAACTGAGTTTGAGTGTCTGACTTTAGCAGGATTCTTTAAGAAATAATG TTATATGAAGTTATGACCCAATAAACTCATTGGCATTTGCCAACACAATAATG
CDS sequence (LotjaGi6g1v0265300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCATCAATTGATTGAAAAGAAGGCTTTTAACGATGATGAAATCATTAGAATCTTTAGCACAAGAAGCAAGAAGCA GCTCTGTGTGACTTTCAATACATTAAAAAACATACATGGGACAACAATTATCAAGGGATTATCAGCGACTCCAATTGATG AATACCTCGGAGCATTGCGTACCACCATTCGTTGCATTAAGAACCCCCAGAGATACTTTGCCAAGGTGTTAGGGAACGCC TTGGATGATTTGGCAACTGAAGACGATGTTTTGAGCCGTGTTATCATCACACGTGCAGAGAAGGATTTAAAGGAAGTCAA GGATCTTTATGCAAGGAGATACAATGTCACCCTTGATGAATTGGTGGCTAGGAAGACATGGGGAAATTACAAAACATTCA TTCTAGAATTGTTAGGAAACAACTGA
Protein sequence (LotjaGi6g1v0265300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHQLIEKKAFNDDEIIRIFSTRSKKQLCVTFNTLKNIHGTTIIKGLSATPIDEYLGALRTTIRCIKNPQRYFAKVLGNA LDDLATEDDVLSRVIITRAEKDLKEVKDLYARRYNVTLDELVARKTWGNYKTFILELLGNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 67 | 67 | 2.3E-9 | ||
Pfam | 1 | 47 | 47 | 3.9E-5 | ||
PANTHER | 1 | 141 | 141 | 1.7E-56 | – | |
ProSiteProfiles | 1 | 64 | 64 | 9.392 | – | |
PANTHER | 1 | 141 | 141 | 1.7E-56 | – | |
SUPERFAMILY | 2 | 140 | 139 | 7.2E-37 | ||
ProSiteProfiles | 68 | 139 | 72 | 14.904 | – | |
Gene3D | 69 | 140 | 72 | 9.5E-20 | ||
Pfam | 72 | 137 | 66 | 6.8E-10 | ||
SMART | 85 | 137 | 53 | 3.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
Molecular function | Calcium-dependent phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium. |
Expression pattern of LotjaGi6g1v0265300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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