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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0265500 |
| Transcript ID | LotjaGi6g1v0265500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase family protein; TAIR: AT2G39120.1 Ubiquitin carboxyl-terminal hydrolase family protein; Swiss-Prot: sp|Q689D6|RPD1_ARATH Protein ROOT PRIMORDIUM DEFECTIVE 1; TrEMBL-Plants: tr|A0A072TWK7|A0A072TWK7_MEDTR Plant organelle RNA recognition domain protein; Found in the gene: LotjaGi6g1v0265500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57915052..57920620) extracted from Lotus japonicus Gifu genome v1.2.
CTGAGATTTTATATTTGCACCAGGACCCTCACTTACTCCTCTCTCTCACAGACTCACGCTCTCACCCTCTCACTCACGAT TCACGCTCACAAGTCACCACGCCCTCACCCTCTCGCACGGCGCACGCCGCGCACCACCACCACCACCACCACCACGCCAC ACCGTCCACCGACCACCAGTCCAGCAGAGGCTCTGAGGCTCTACCCTAGGTATGGCTGATTTCCTTTCTCTTCTCAAGCT TGATTTCCCTAACCCTAAATCGATTCCCTTCAACCCATCACCTTAGGTTGATTCTCAATTTTGTATTTTGTAGTATATAT TTGTGTAATTTTGCTATAATCATAGGTTTTAGATGTTCTTAGTTTATGAGGCAAATGAGGTTTTAGTAAAGTTATGTTCT TTGCAAAGAAATTTTGAAATTCTACTATGGGAAACCAAAATTTGGGCTTGGGAGTGTAAGGTACCAGACCAAGTTTAGGG AGAGAAAGTTTGCACAGGCCCTTAGTCATGAGCTTCTCGTATGGTTCAACCTGATTATCATATGAGCTATGATGGTGATC AGTGGTCTTATAGAATGGGTTCTATCAAGGTTTTTTGAGGTTCTTCAATTTTACTGTAATGAAGAAAATTAAACGGTGTA AGTTTCAAAGAAAATAGCCTCCTAGAACCAATTAATGCATTAAGAGAAATGTCAAGATGTGATTGCATTTGTTCACTTTG TCAATGCTGTTCTTAAGGCCATTCATGTTCTGTGTTCTTGTCACTTTCTAGCTTAGCAAATGGCCTTCATAATATAAACT TCTCAGTTCTAGTTTACACGTGAGTTGGTGTTATACTGTCAGAGTAGTTATGTAGTTCAGAAATCTGAATCAGATATCTA CTGGTTTTTTTGGTCCTTTTCATTTTTTTGAACCACCTTGTAGGCGTACAAAAAAAAATGAAGTCAATATTCAGAGGAAA GGTAGCAAGTGAGGAGGAGGTGTTAGAAGGGGCTCTTATCAGGGTGTGGCACTGGGCAAACAGTAGGGTGAAAGGCTTCC ATTTTTCTGTTTATGAATGGCTTTCTCAACCAGAGTTGTGCATTAGAATGGTGGGATAATTTTGTTGATTTGGATCCATG GTAATGAATGCAGGGTATGCAGATGCTTTAGGTGGGGTAACTTGGCAGAGCTATTGGTGTTCAGAGCAAGAGATTTGATG GGCTTGGATTGTCCTCTGCGTGGCTGGATGCTCTTATGTTTTTTAGTTTCTATCTTCACTTAATAGAACTGGTGTGGAAA TTGGAATTATTTACAAGGGAGGAGTTTTGTTTTGATCATAGAAGATTGTGACTGTACAGTGGGGATGGAGCTAGAGAATT AGTATCCTGTTTTTCTGCAGCAGCATAGGCTAGTGAATCTTCTCCTCTTTTGTTGCTTTCGGGTCCTGAGTTGTAATTGT TACTCTCTTGATCCCACTTTTCTTTATGTGTAGTGCCTGCTTGGTGCTAATTTTTGTTTTCTTTTTTGTCTACTTTACTT TGTTCCGGGTTTGAAGTACCCCTTGTACTTCATATTAATACAATTTTGCTTATCAAAAAAAAAAAACAGAAAGAAAAATA GCCTTGTTACCCTTGTATGTTATTCTTTGAATTATATATTGTGTTGGGTTGTGAATTTTAAATTCATTGATAGCATAATG CATGGAGAATCTACAAGACACAATAATAGGCTAAGTGGAGGAGAAATCTTTATCACTGTTAATATGACACTATGCAATTT ATATCAATTCTTACTTTTGAAGGAGCTAAAGAAGGTAAATCCCCCCTGTTGTGCTGTGCAAATATGCAATAGTTTGGAAT ACTTCATGATAACAAAGAATCAAAAACTTCATACCAGTGTTATAGAATATGATAGCAGCCCCATAGTGCTATGTCTAAGA ATAACATTGACTCCGTAGAGGACAATTATGATTTGTTATAATTTCTGATGTATAAACATATTACAGTTGTTTTTAATTAT ATTTTTATCAATTTGCTCATTGAAAAATTTGAACCCCCTAACCCTGGGGTCCTGGATCCGCCACTGCAAATTGCCCTTCT TCTTTGATTGAGAGTTGAGACACTTGGAGTAAATGGTAGTAGCATGGTGCTGGTAGAGTTTAGAAAATGGTTTATAGTTA GTTATAAGCTATGTAAGTACACTATATTGGTCTAGGAAGAAAGTTAGTTGTTTCTTTACACTTTGCAAAATCTTAATCTT TTGTTACTATTTGATTATTTTATTTTTTGTTTTCAAATTTTTCCATTCATTTGTTATTTTCTTTGTTAACATGAATCAAT GATGATAAATATGATGGAAATCAACACAAACCAGCTTTAGCTATGCTTTGAATTGTGCATCAGGTTACTTAACTATGCTA CTCTAGCTGCCATGTTCTTAATCTTGTTAACTGTAATTTTATTATTGTTTTAAAAGGTTGTTCTTTTGTAAGATTTATAG CTGAATTGAATTCCTTTAACTTTCTACAGGTCAAACTCTGATCCTTTCTCTAATCAATATATTTGTGGTCAATATTGAGC TCTGGAAAAGTAATTGCCAATAACCCAAATATTTTTACAATCCTCACTTTTCATTTTACTGGAAATTGCTATTGTCCCTC AATGTTATTCAACTTTGAGAGATCCAAAACACTCAGAGAGCTGCTCAGACCTTATGAAAATTCAATCTTCTCCTTTAAAT TCAAGATCCCTGGTCTTCCTTTCTCACACATCCAGCGGCATAGTTACGTGAATGTGTACATGAAGTGGAAAAAAGATTCA TACTATGACTCAATTGAGCACATCCACCAATCCATTCAGCTCAAGCCTGTTATTGCCCTGAAAAACTGCATTACCCAGGA TCCCAACGGGTGCATCCCTATCTCTGCGGTGTCAAAGAAGGGATTACAGTTAGATGTGCCCATGAAGGTTGCGAGATTTT TGAGGCAATATCCATCCATTTTTGAGGAGTTTACAGGTCCTCAGTATAATCATCCTTGGTTCAGGTTGACAGCAGAAGCT GCTGAGATCGACAGGGATGAGAAGAGAGTATATGAAGAATGCAGGGAGGACTTAAGGTCCAGGTTGAGGAAGATGATATT GATGACCAAAGAGAATGTTCTACCTTTGAAGATAATTCAAGGGATGTTGTGGTATTTGGGGTTGCCTAATGATTATTTGC AGTACCCTGAGCAAAATTTTGATGAATCTTTCAGGTTTGTTGAGATGGAAGATGGATTGAAGGGGTTGGTGGTTGAAAGC AGAGAAAAAGTTTGTTCTGTAATGGAGAAGAATGCCATGAAAAGAGGTTTGTACAGTGGGGGGGCAATGGAGGCCATTGA ATTTCCCTTTTTTCCATCAAATGGTTTAAGGTTGAGGAGGAAGATTGAAAATTGGCTACATGAGTTCCAAAAGCTTCCTT ACATATCACCTTACGATGATTTCTCAAACTTGGATCCAGACAGTGACATAGCAGAGAAAAGACTCGTGGGGTTTCTTCAT GAATTGCTTGCCCTTTTTGTTGAGCATTCGGCGGAAAGGAGGAAGCTCTTTTGCCTCAAGAAGCATTTCGGGTTGCCACA GAAAGTGCACAAGGCTTTTGAGCGGCATCCCCACATGTTCTACCTATCTTTCAGAAACAAGACTTGTTCAGTCATTCTTA AGGAAGCTTACTGCGATGAATCAGCTATTGAGAATCATCCTATATTGAGGGTGAGGAAGAAGTACATCAAGTTGATGAAG GAGTCAAAAGTGATTTTAAGGAACAGGAGGGTGAATGGTCGATTTTCTAACTGTAGTGAAAAACTAGATTTAGATTCAAA TGATCTGGATGAAAGGGAACTTCACATGGCAGATTGTTCTTCGGAACAGGCTGCATGAAAATTTGTAAAAAAGATTAGAG TTGCTTTATCAGAAGCTAGAATGTGCTCTATGTATATATCAGTTTAAGGAACAAGTTTGATTAAGTGTGTCGAATTCTTT AGCATCACATTTTTTGGGGTTTTAATTTTTTTATGTGTAGCATGTGCTCTACTTTTGTAGCTGTACTCGTTAGCATAGCA TTATTTTGACAAGTTATAACATGTTTTCAATTTCAAGCCTTTGTTGACTTGAATTTTATTTCCCTGCTGGTCCTTGTTTA TGTTCATGATGTGTAACTATAATCTCTTCATTTTCTGAGTCTCTGCAATTCTGATTTGCTTCATAGTGGAAGTGAATCAT TATAAACAGTTCTTCAAAAACAAAAAGAGGTTCGTAACATCCACCCTGTTATCTAATAATTTTGAGACCTCACTCTGGAG AGTGAGCCACTCAAATTACACACTCTCTATCAGGAATTGCCACGTCAGCTTTTTTAACAAAAGATATCCTTCTCTCTTCA GAAGCTGTGTCCGTGGTACTCACGCGACTCATTCTCATCTCTGCTTCATTTTCATTGTCCACAACGTACTCCCTGATTTT TCTCATCTCTTTCACTCTCCCTCTCCCAAATCGATTCCCCTCAATCAGCGATTGCATTTTCAAATTTCAAACCCATGAAA TCAGTCCCAAATCTGATTTGGTTCCCTCAATCAGTTTTTTCGATCATTCACTCCATAAAATCTCGAAACCTTTTCACTCT CCCAATTCCAAAAATCAGTTCTCTCTAAAATGGATTTTAATTCTGCAATGCAAGATTCCATGGATCATAGGATTCATGAG GTTCACAACAGGCACATCTCATCTTGAAGATATCAGAATGTTCCAAAAGACACAACCTTAGGTGTTTGGGCTCTCCAATT TCAATCTCTGATGTCGCTTCACGTATCTCTTTTGTTTCCTCAGGTAAATTAAAAAAGTGGAATTTTTTTGTGGACTAGAT GAATTGGTTTCTCATATACGAAAAGCAAAATTATGAACTGTAAGATTTCATTGACACCCACCCTGAAACTGTGTTGTGTA TTTTGATTTTTTTATGCTCTGAAGCTGTTATCTTTACTTCATTGCCAAACCTATTATTTATTATCTCAACTGATTTTTTG AATTCATTCTCTGATTTTCTTAAAGAACAGTTGATCAATGGTTTGTTTAGCTTTTAATTATTTAAATTTTATCATTTACA TCTTTATAATATTTTTTTATCATTGCTTTATAATTTATTGTATCTTATTGCAGGTTCTTGCCAAAAGTTGGAACTTTAGT GTTGTTTCTTCCTTAAATTTGATAACCTTCTCTGCTCCATTGCCACTTAAGATGGAAAACAAGACTTATTCAAAGAAGAG TAAACGCGTGGAAATGTTGACTTGAATGTCCATGACCATGGCATTAGATCATGTAAGCCAAAATTTACAATTGATTTGTA TTGTTGAATTGTATTATAAGAGTATTTGATTGGACTTCAGTGTCTAATTGGTCGTTGGTTCTGTAAAAAGAATAATGCTG CTACAAAGTTTAGTAGCTTGAGGGTATGTTTCACCTTGAACTGTCTACTTAAATATGACATGCCATCCTTTAATTCTAAT ATTGTCATTTTTTACTCTTAGTTTCTTAATAAGTTGACTAATAATGCTA
CDS sequence (LotjaGi6g1v0265500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTATTCAACTTTGAGAGATCCAAAACACTCAGAGAGCTGCTCAGACCTTATGAAAATTCAATCTTCTCCTTTAAATT CAAGATCCCTGGTCTTCCTTTCTCACACATCCAGCGGCATAGTTACGTGAATGTGTACATGAAGTGGAAAAAAGATTCAT ACTATGACTCAATTGAGCACATCCACCAATCCATTCAGCTCAAGCCTGTTATTGCCCTGAAAAACTGCATTACCCAGGAT CCCAACGGGTGCATCCCTATCTCTGCGGTGTCAAAGAAGGGATTACAGTTAGATGTGCCCATGAAGGTTGCGAGATTTTT GAGGCAATATCCATCCATTTTTGAGGAGTTTACAGGTCCTCAGTATAATCATCCTTGGTTCAGGTTGACAGCAGAAGCTG CTGAGATCGACAGGGATGAGAAGAGAGTATATGAAGAATGCAGGGAGGACTTAAGGTCCAGGTTGAGGAAGATGATATTG ATGACCAAAGAGAATGTTCTACCTTTGAAGATAATTCAAGGGATGTTGTGGTATTTGGGGTTGCCTAATGATTATTTGCA GTACCCTGAGCAAAATTTTGATGAATCTTTCAGGTTTGTTGAGATGGAAGATGGATTGAAGGGGTTGGTGGTTGAAAGCA GAGAAAAAGTTTGTTCTGTAATGGAGAAGAATGCCATGAAAAGAGGTTTGTACAGTGGGGGGGCAATGGAGGCCATTGAA TTTCCCTTTTTTCCATCAAATGGTTTAAGGTTGAGGAGGAAGATTGAAAATTGGCTACATGAGTTCCAAAAGCTTCCTTA CATATCACCTTACGATGATTTCTCAAACTTGGATCCAGACAGTGACATAGCAGAGAAAAGACTCGTGGGGTTTCTTCATG AATTGCTTGCCCTTTTTGTTGAGCATTCGGCGGAAAGGAGGAAGCTCTTTTGCCTCAAGAAGCATTTCGGGTTGCCACAG AAAGTGCACAAGGCTTTTGAGCGGCATCCCCACATGTTCTACCTATCTTTCAGAAACAAGACTTGTTCAGTCATTCTTAA GGAAGCTTACTGCGATGAATCAGCTATTGAGAATCATCCTATATTGAGGGTGAGGAAGAAGTACATCAAGTTGATGAAGG AGTCAAAAGTGATTTTAAGGAACAGGAGGGTGAATGGTCGATTTTCTAACTGTAGTGAAAAACTAGATTTAGATTCAAAT GATCTGGATGAAAGGGAACTTCACATGGCAGATTGTTCTTCGGAACAGGCTGCATGA
Protein sequence (LotjaGi6g1v0265500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFNFERSKTLRELLRPYENSIFSFKFKIPGLPFSHIQRHSYVNVYMKWKKDSYYDSIEHIHQSIQLKPVIALKNCITQD PNGCIPISAVSKKGLQLDVPMKVARFLRQYPSIFEEFTGPQYNHPWFRLTAEAAEIDRDEKRVYEECREDLRSRLRKMIL MTKENVLPLKIIQGMLWYLGLPNDYLQYPEQNFDESFRFVEMEDGLKGLVVESREKVCSVMEKNAMKRGLYSGGAMEAIE FPFFPSNGLRLRRKIENWLHEFQKLPYISPYDDFSNLDPDSDIAEKRLVGFLHELLALFVEHSAERRKLFCLKKHFGLPQ KVHKAFERHPHMFYLSFRNKTCSVILKEAYCDESAIENHPILRVRKKYIKLMKESKVILRNRRVNGRFSNCSEKLDLDSN DLDERELHMADCSSEQAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 32 | 405 | 374 | 4.1E-201 | – | |
| PANTHER | 32 | 405 | 374 | 4.1E-201 | – | |
| Pfam | 50 | 376 | 327 | 8.4E-107 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0265500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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