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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0266400 |
| Transcript ID | LotjaGi6g1v0266400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytomatrix-like protein; TAIR: AT1G19980.1 cytomatrix protein-like protein; Swiss-Prot: sp|A0JNH6|C102A_BOVIN Coiled-coil domain-containing protein 102A; TrEMBL-Plants: tr|A0A0B2SK41|A0A0B2SK41_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0266400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58006500..58011012) extracted from Lotus japonicus Gifu genome v1.2.
AAAACGCATTTATTTTGAAAACTCATCTAACCCCTCTCTCTCTCTCTCTCTCTCTGTCTCGATTCGACCGTTGCAATCTT GTTCCCTCTGATTCCATTGCTTCATCGTTTCACCACTTCAGTTCTTCTGAATTCACATTCCCCATTGATTCCCTCACTCA CTCACTCACTCTCCTTCAATTCACGATGCGCAATTCGAAGAACCCAGATCCTTCTTCTTCTTCAGAACGCAAAAACTGGG GCAACATCTTCAACTTACTGGTCCAAATGGTGCGAAACCAGCAAAACCAGCTTCATTCATTCGCCAACCAACACAAGCTC CTCGAAGACCGCTTCAAAATGCAGCACGAAAGATGGCTCTCCGATGTTCGTCTTCACAAGGATCAAATCTCTCAGGTAAA TCGCTTTTCTTCAATTTGCCCTAATTTTTCTCCACAGAGAAGAAAAATAAACTTCAATTTTTGATGCTTTCTTTGCGATT TATTTGTAGATGAAGGGGTTTTTGATGTTTGAGGAGAAGAAAGGGTTGCTCGAAGCGGCGAAGGCGGATTTGACGCTGGG TTTCAAGCACAGAGAAGCTTCCATGTTGAAATGGATTTTGGGTCAGTGCCTTTTCTTTGATTAATTGGATAAATGAAAGA AAGTTAGCGCTTTTATGCTTGTAGGATGAACTAGGGTTGTGATTTCTGTTCTTGGTGTTAGGTCCTGAATTTGATGTTAT AGTACTTAATGTGTTGTTCTCCCTTGAATGCAGCAGAAAGTTAGGGTTTTTATGCTTGTTGGATGAAATAGGGTTGTGAT TTCTGTTCTTGGTGTTGGATCCTGAAGTCGATGTTGTAGTACTTAATGTTCTCCCTGAATGCAGCAGAAAGTTAGGGTTT TTTTTGGCAATTGAACATGGAGGATGCATGGTTCTTTTTGTTATCCTTGTTAGATTGTTTCATAAAATATTGTAGGTTTT TGTTTTGTTACTTCAAAATTCAAATGTTTGGGGTAGGTTTATGTGATCGGTGACTGTAAGACTTGGCTTAGAAGTTGAAA TTCTCCTAGTAATCTTGGAAAGGCCCCTGATAATTTTTCTGTTGAAGACGCACAAGACACAACTAACTCCAATAATATAT TTCTAGATATTTGCATTTTCTGAATTTGAATAACTTTACACTGTATATTGCTGTAAGAGTTGGCTTTGATGTAGAAATAC CTGATTGGCTGATCCCTTTTTTAAAGTTTCTGGATTTTGTACTCTGGATGATGGTGGATGATCATGACACATAGCTTGCT ACAGTTTTTTTTTGGGGGGAGGGAGCTGCTTTAAGTTATTTTCAGTTTTTCAAAAGGGAGAGCTTTTAGATTGTTGGAAT GTAGGAATTCAAACTATTTGTCTATTTGAAGTTATTCTGACCACATTGTTGGCTTCATAGTTCATATTGGGTTATCTTTT GGTTGCAGAGCATACAGAGGATGAGTTGGTGGATTTTAAAGCTTGTTATGATGAATACCTTTCTCATATATCCTCAGATG AACAAGTATGTTGACTGTCAGAACTCAGAATTGCATATTGCTTGAGTTCTCTGCTACTATTTTTTATGCTTTTCATTATG CTGACCTGTCACTTTATTACAGAACCAAGGAACGGTATTTAAGGATGCTAGTAAGAGGATCAAAGAAACCACAGATAGTG GGAACAAGTCCACTTGCAAAAGTAAAGAAAAGGAGAAATGTTCCAGTGTTATCAAAGATGAGTTGAGCAGGTTAAAAGGT GAATATGAGAAGCTTGCTTTGGAAAAAAATTCTGAGTTATCAGCTCTCTTGGCAGAAAAGAAATTTGTGTGGAATCAATA TAATATTATGGAGAAGGACTACAATGATAAATTGAGGAGTAAACAAGCTGAAGTAGAAAAAGCAAATGAGAAGATAAGGG CACTAGTTTCCAGCATGGAGCAACTGCAGTCTGAAAATATTGAAAAGGATAGTGCAATATCACAGCTAGAAAGCAAAGTG GCGGATATGGAGGCTGAAACAAAAAGATTAAACAACCAAATATCAGGACTCTCAGAGGAGTTGGGATCTTTAAGAAAGTG CAGGAACAACCAAGTCGCACCTGTTTTAAAGCGTTGCACAGAAGGAACTAAAACATCTGACTCGGGAACCATTAAGAGCA GCAGGAGAAAAAATGTCACCTTCAACCTTAAAAAAGAAATATGTACTCCTGATGCCGACAGTCCTGCCAAATTATCGGAG AAGGTAAAGCCTGTGCTTTTACTATTTGCTTATCTTCCGAAATTGACTGTTTAATTTTGTTTGCATTATGTTTGGGTGCA CTTTTTGCATGTTATGTTTGTACACGTTTGGATACAAACCAAAAAGCACTTATTGGAGCTTGTTTACTGCATTTTTTAGT AGATAAGCCTCAATAAGCCTGTATCCAAACATGCTCCTCCTCTCTTTATTTTTTATAGACAATGATTTAGCGCCAAGGAC TTCGTTCTTGGAAACAATGTTTGGGTGGTGGGGGTGGAGAACTGCCTGCTTCTAGAATAGGAAGGGTGTTTGAGATGAAA TTTAAGAGAAACATGCTATTGTAGTCTTGAGATAAACCATACTAGCATGCCTTTATTATACTTGTATATTCATTTCTGAA GATTTTTCATTTTCTAATTTAGATAAGAACGCTTTCCTTATTGTTTTTTGAATCTTAATGTCCAGGACAAGAAAAGCCTG AAGAGGAAAGGAGGCTCAGTCCCCGCCTCTGAAACTCCCAAGCTGTTCTCTTCCAGCTTCAAGGTTCCAAAACTAAAGGC CTCTTTAAGGGTAGATGACAGATGACAGCTTCTGTTAATTTTTAGACTGCAGTTAAGAGATGGTTGCCTTGTATATGGTA TTTGTATTATGCGCTTTTTATGTAAATTGTGTATTATGTATGAGCTTTCTTTTTGGTGTAGGTTCGTTCATAGTTCTTAT GATGAGCTTGTGCGCAAATAGGTTTGAGATTCCACTTTAGGTAAATTATTATGTATCAGCTAGCTAGGGACGAGTTTGGT TGGTAATTCTTCTAACAAAAATAATGGATAGGTTTCTTATTATCATTCTAATGAAGTGGAGCTTGATTTGATGAAGTTGA TTTATACTTCTCTCCTGAATGTAACTGGCATTTTACCAAATTTTCCACGAGCTCTCTCTGGCTCTCTCTCTCTCTCACAT CAGTAAATAATCTTAGGCATTTGATTCTTAATTCTTTAGACATAAAATTAACTTTTGAACATTCTCTAGATTGTCATGTT TATTTGCACCGCAACCGAAAATCTCAACACCCAAGATTTAACAATTTTTCAAAAACTCAGAATATTGACCTACACCCTTC TCATCTAGAAACTAAAACAAAGAACCCAAAAGAAATCATATCCACATCTTTCCAATGAAGAAGAAGAAAACTCATAAAAA CCTAAATGTAATTTTTATACAACATCAAATGAGAAATCAGAAAACCCATGCTCTAAAGCAAAGAGTTTAGCTCATTAAAT GTTTTTTTTATAATTTTAATTTTTACTAATCATTTAATTTAATTAACAATTATACACGGGTCAAAAAAAATAAAAAATAA TTAATAAATTACACGTGGCGTGCAATGTTATCTATGGTCCCTTGGTTGGTCGAGAATTATCGTGGGAAGAGGCTTTGATG CGTGATATTGGGACTATTCAATTATCCATGGATGTTCCTTATGCTTGAACCTGGTTGCCCGGCACCGATGGTGTTTATTC TGTTCAATCGGCTTATCTTTTATTACAGGAACAGACTATGCTCTCTTCATGAATATTTGGAAGTCTTTTGCACCATCTAA TGTGAAAGCCTTTGCTTGGAGGGTACTTTTGGACCGTATTGCATGTAGAGAAAATTTATTGAAGCATCAGGTGATCTCTT CTCCTACTGAGGCTTCTGGTATGCTCGAAGATAGTTGTTGCTTGACAGTGCATCTAAGTATCTGCTTGAATTGCGTCTCT TGCTGAAATGGTTTGGTGGCTTCTCGTGAAGGGTGATTGCTGGTCTTGTGTGACTTTTAAGCCTTCATTTCATACTTGGT GGATTAGGATTCTTGTTGCTGAGGCATCTGATGTTAGAGTTGGAAGTTACTGTTTTGTGTTGGATTTTGTCAATTATGTA TTGTTTGGACTTAGTACTTTTGGGGTTAGTACATGGAAGCTACTGCTTTGTGTGGAATTTTTTGTGGGTTTTGGTCCTCT CGAAGTGTCTCCTAGTCTTTATAAATGTGTACTCTTTTTCCTTTACTAGGTTTTTTTAAGGGGGTTTTCCTAGTAAAGTT TAAATGAAGCATTTTTTATAAAGTCTTGCTTTCAGTGGGATCACGTCTTGGGGTTTTCCTAGTGGTTTTTCTTCTTATCT TTCTTGTAGTTATTTTCTCTTGTATTGGATTGAAGTACCCCTTGTACTTCACTTTAATAAAATTTGGCTTATTTAAAAAA AAAATCAATTGAGGACTAATTCCAAAACTTGCT
CDS sequence (LotjaGi6g1v0266400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCAATTCGAAGAACCCAGATCCTTCTTCTTCTTCAGAACGCAAAAACTGGGGCAACATCTTCAACTTACTGGTCCA AATGGTGCGAAACCAGCAAAACCAGCTTCATTCATTCGCCAACCAACACAAGCTCCTCGAAGACCGCTTCAAAATGCAGC ACGAAAGATGGCTCTCCGATGTTCGTCTTCACAAGGATCAAATCTCTCAGATGAAGGGGTTTTTGATGTTTGAGGAGAAG AAAGGGTTGCTCGAAGCGGCGAAGGCGGATTTGACGCTGGGTTTCAAGCACAGAGAAGCTTCCATGTTGAAATGGATTTT GGAGCATACAGAGGATGAGTTGGTGGATTTTAAAGCTTGTTATGATGAATACCTTTCTCATATATCCTCAGATGAACAAA ACCAAGGAACGGTATTTAAGGATGCTAGTAAGAGGATCAAAGAAACCACAGATAGTGGGAACAAGTCCACTTGCAAAAGT AAAGAAAAGGAGAAATGTTCCAGTGTTATCAAAGATGAGTTGAGCAGGTTAAAAGGTGAATATGAGAAGCTTGCTTTGGA AAAAAATTCTGAGTTATCAGCTCTCTTGGCAGAAAAGAAATTTGTGTGGAATCAATATAATATTATGGAGAAGGACTACA ATGATAAATTGAGGAGTAAACAAGCTGAAGTAGAAAAAGCAAATGAGAAGATAAGGGCACTAGTTTCCAGCATGGAGCAA CTGCAGTCTGAAAATATTGAAAAGGATAGTGCAATATCACAGCTAGAAAGCAAAGTGGCGGATATGGAGGCTGAAACAAA AAGATTAAACAACCAAATATCAGGACTCTCAGAGGAGTTGGGATCTTTAAGAAAGTGCAGGAACAACCAAGTCGCACCTG TTTTAAAGCGTTGCACAGAAGGAACTAAAACATCTGACTCGGGAACCATTAAGAGCAGCAGGAGAAAAAATGTCACCTTC AACCTTAAAAAAGAAATATGTACTCCTGATGCCGACAGTCCTGCCAAATTATCGGAGAAGGACAAGAAAAGCCTGAAGAG GAAAGGAGGCTCAGTCCCCGCCTCTGAAACTCCCAAGCTGTTCTCTTCCAGCTTCAAGGTTCCAAAACTAAAGGCCTCTT TAAGGGTAGATGACAGATGA
Protein sequence (LotjaGi6g1v0266400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNSKNPDPSSSSERKNWGNIFNLLVQMVRNQQNQLHSFANQHKLLEDRFKMQHERWLSDVRLHKDQISQMKGFLMFEEK KGLLEAAKADLTLGFKHREASMLKWILEHTEDELVDFKACYDEYLSHISSDEQNQGTVFKDASKRIKETTDSGNKSTCKS KEKEKCSSVIKDELSRLKGEYEKLALEKNSELSALLAEKKFVWNQYNIMEKDYNDKLRSKQAEVEKANEKIRALVSSMEQ LQSENIEKDSAISQLESKVADMEAETKRLNNQISGLSEELGSLRKCRNNQVAPVLKRCTEGTKTSDSGTIKSSRRKNVTF NLKKEICTPDADSPAKLSEKDKKSLKRKGGSVPASETPKLFSSSFKVPKLKASLRVDDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 373 | 373 | 2.1E-117 | – | |
| PANTHER | 1 | 373 | 373 | 2.1E-117 | – | |
| Coils | 29 | 49 | 21 | - | – | |
| Gene3D | 170 | 292 | 123 | 2.9E-5 | – | |
| Coils | 210 | 279 | 70 | - | – | |
| MobiDBLite | 328 | 360 | 33 | - | – | |
| MobiDBLite | 334 | 349 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0266400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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