Transcript — View — Lotus Base

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LotjaGi6g1v0274100.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0274100
Transcript ID	LotjaGi6g1v0274100.1
Lotus japonicus genome version	Gifu v1.2
Description	Patatin; TAIR: AT2G39220.1 PATATIN-like protein 6; Swiss-Prot: sp\|O80959\|PLP6_ARATH Patatin-like protein 6; TrEMBL-Plants: tr\|A0A0S3S4D5\|A0A0S3S4D5_PHAAN Patatin; Found in the gene: LotjaGi6g1v0274100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:59103152..59105267) extracted from Lotus japonicus Gifu genome v1.2.

GCTATTAATTAGGAATGTTCTTGGATTGTAACATTCACTCACCCACACACTCACTATATAAATCACGTTGCAGTCCTTTC TTCATCATCAACAGCATTCAACAGACACCAACAAAATCCTCCACAGTCAATTTCTCTCTCTCTCACTCTCTCTAACTTTC TCTCTCTAAAAACAACAAATTACAGAAATGGCGGCACTGAACACCATGGATTCTACCTTCGAGGTCGACAAGCTCACCTA CGAAATCTTCTCCATCTTGGAGAACAAGTTCCTCTTCGGCTACGCCGACGCCGAGAATCCCAAGAATTCAGTTCCCAATT TGGCGCAATTTTCATCAAAATTGGATAACAACACCGCCGGCAAGGTCAGGATCCTCTGCATTGACGGCGCCGGCTCCACC GACGGAATCCTCGCCGCCAAATCCCTCGCTCACCTCGAATCCTGCCTCCGCCGCAAGTCCGGCGACCCAAACGCGAGCAT CGCAGGATACTTCGACGCCGTCGCAGGCTCCGGCGTCGGCGGAGTCCTCGCCGCGCTTCTCTTCACCCGCGGCAGCGACG GGCTCCCGATGTTCACCGCCGATGAGGCGGTAAAGTACCTCACCGACAACCGGAGCAAGATCTCCCGGAAGCCGGCTGGG TTTCTCCGCCGGCGAGTTTTCCGGCAAGTGTCAAAGGCGGAGAAGCTTTTCCAGAAGACGTTCGGCGAGTGCACGCTGAG GGACACTCTGAAGCCGGTGCTGATCCCCTGCTACGACCTCGTGACGCGCGCGCCGTTCGTTTTCTCCCGCGCTGACGCGC TCGAAATGGACGGTTACGATTTCAAGATGCGCGACGTGTGCGCTGCCACGTCAGCTGACCCTGCCTCAGTGGGCCCCACT GAGATGCGGTCTTTGGACGGAAGGACGAAGATCTTGGCCGTCGACGGCGGCGTCGCGATGAACAACCCAACCGCCGCCGC CGTCACGCACGTGCTGAATAACAAGCATGAGTTTCCGTTCTGTAACGGCGTTTCTGACCTGTTAGTCCTTTCCCTTGGCA ACGGAGAGTCAGACTTCAACGCCGTTAACTCGCCGTCAGGGTTTGTGAAAATCGCCGGTGAAGGTGCTTCCGATATGGTA AGAACCAACTACCAATAAGAAATCTTATTTTAATAAAAAATAATTATTATCCTTTTTATCGTGATCCCTTTTAAATTATA ATTGGAGTGGTGGTTAGGCTAAGAGTGATGAATTTCTCACCTAACAAACATATCCATTTAAATATTTATTTAAAAAAAAG GTGTGATGGGTTGGATTAATTTTAATTATTGGCAAATACTAATGATTGTTGAAAACAATAATGCAGATTGATCAAGCTGT ATCAATGGCATTTGGAGAATGTGGGATGAACAATTATGTGAGGATTCAGTCAAACCGGGTGATGGCGAAGGCCGAAAGCA AGGCGGCGTCGGATTTGTTGGCGGTATCGGAGGAGATGTTGGGTCAGAAGAATGTGGAGTCTATTTTGTTCAAAGGAAGG AAGGTAGCAGAGAACACAAATTTGGACAAGTTGGAATTGTTTGGTGGTGAATTGATCAAGGAACATGAGAGGAGAAAAAC TAGCATTTTGCCAACTGTGGTGTTGAAGAATTCCTCTCCCTCACCAAGAACATCATCTGCTACTACTTTGTCATCTTTGT CTTCAAGCTGTTAGAGTGAGGGGAAAAGATTAGTAGGAAAAAATTCAAAATTGGATTTCATAGAGGGTTGGATTTTTATG TGAGTTAAATGTTGTGATTTTGGGTTAACTGCCGCTTATGACTGATCAAGGAAAAATGAGTCTGAGCTGTGCAGAGCTGA ATCCTCTATACTACTACTACCTACATTATGTAGTTTTTGGGTATATATTACATGTATTACATGTATTTACTATTTAGTGA TAGTGGTTTGTGCATATGTGGTTGTCAAAGGATGAATTTTGAGGCCAAGTATAGAGCTATGCTTGATTTGTGAGGAACTG AGAATTAGATTGTACTGTTCAATCAGAATGTCTGATTGTATTGTGACTAAAAATGCACAACATTTATTCTATTAAATTTA AATCCCATGACTAAATGATTGGTGTTTTTTCCCCAA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0274100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGCACTGAACACCATGGATTCTACCTTCGAGGTCGACAAGCTCACCTACGAAATCTTCTCCATCTTGGAGAACAA GTTCCTCTTCGGCTACGCCGACGCCGAGAATCCCAAGAATTCAGTTCCCAATTTGGCGCAATTTTCATCAAAATTGGATA ACAACACCGCCGGCAAGGTCAGGATCCTCTGCATTGACGGCGCCGGCTCCACCGACGGAATCCTCGCCGCCAAATCCCTC GCTCACCTCGAATCCTGCCTCCGCCGCAAGTCCGGCGACCCAAACGCGAGCATCGCAGGATACTTCGACGCCGTCGCAGG CTCCGGCGTCGGCGGAGTCCTCGCCGCGCTTCTCTTCACCCGCGGCAGCGACGGGCTCCCGATGTTCACCGCCGATGAGG CGGTAAAGTACCTCACCGACAACCGGAGCAAGATCTCCCGGAAGCCGGCTGGGTTTCTCCGCCGGCGAGTTTTCCGGCAA GTGTCAAAGGCGGAGAAGCTTTTCCAGAAGACGTTCGGCGAGTGCACGCTGAGGGACACTCTGAAGCCGGTGCTGATCCC CTGCTACGACCTCGTGACGCGCGCGCCGTTCGTTTTCTCCCGCGCTGACGCGCTCGAAATGGACGGTTACGATTTCAAGA TGCGCGACGTGTGCGCTGCCACGTCAGCTGACCCTGCCTCAGTGGGCCCCACTGAGATGCGGTCTTTGGACGGAAGGACG AAGATCTTGGCCGTCGACGGCGGCGTCGCGATGAACAACCCAACCGCCGCCGCCGTCACGCACGTGCTGAATAACAAGCA TGAGTTTCCGTTCTGTAACGGCGTTTCTGACCTGTTAGTCCTTTCCCTTGGCAACGGAGAGTCAGACTTCAACGCCGTTA ACTCGCCGTCAGGGTTTGTGAAAATCGCCGGTGAAGGTGCTTCCGATATGATTGATCAAGCTGTATCAATGGCATTTGGA GAATGTGGGATGAACAATTATGTGAGGATTCAGTCAAACCGGGTGATGGCGAAGGCCGAAAGCAAGGCGGCGTCGGATTT GTTGGCGGTATCGGAGGAGATGTTGGGTCAGAAGAATGTGGAGTCTATTTTGTTCAAAGGAAGGAAGGTAGCAGAGAACA CAAATTTGGACAAGTTGGAATTGTTTGGTGGTGAATTGATCAAGGAACATGAGAGGAGAAAAACTAGCATTTTGCCAACT GTGGTGTTGAAGAATTCCTCTCCCTCACCAAGAACATCATCTGCTACTACTTTGTCATCTTTGTCTTCAAGCTGTTAG

Download CDS Sequence

Protein sequence (LotjaGi6g1v0274100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAALNTMDSTFEVDKLTYEIFSILENKFLFGYADAENPKNSVPNLAQFSSKLDNNTAGKVRILCIDGAGSTDGILAAKSL AHLESCLRRKSGDPNASIAGYFDAVAGSGVGGVLAALLFTRGSDGLPMFTADEAVKYLTDNRSKISRKPAGFLRRRVFRQ VSKAEKLFQKTFGECTLRDTLKPVLIPCYDLVTRAPFVFSRADALEMDGYDFKMRDVCAATSADPASVGPTEMRSLDGRT KILAVDGGVAMNNPTAAAVTHVLNNKHEFPFCNGVSDLLVLSLGNGESDFNAVNSPSGFVKIAGEGASDMIDQAVSMAFG ECGMNNYVRIQSNRVMAKAESKAASDLLAVSEEMLGQKNVESILFKGRKVAENTNLDKLELFGGELIKEHERRKTSILPT VVLKNSSPSPRTSSATTLSSLSSSC

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32241 View details on PTHR32241 Search for proteins/transripts with this domain View external data on PTHR32241	6	421	416	2.4E-188	–
PANTHER	PTHR32241:SF12 View details on PTHR32241:SF12 Search for proteins/transripts with this domain View external data on PTHR32241:SF12	6	421	416	2.4E-188	–
Gene3D	G3DSA:3.40.1090.10 View details on G3DSA:3.40.1090.10 Search for proteins/transripts with this domain View external data on G3DSA:3.40.1090.10	47	398	352	1.0E-68	–
SUPERFAMILY	SSF52151 View details on SSF52151 Search for proteins/transripts with this domain View external data on SSF52151	59	336	278	2.98E-37	IPR016035 Show description in modal box View details on IPR016035 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01734 View details on PF01734 Search for proteins/transripts with this domain View external data on PF01734	63	258	196	4.2E-14	IPR002641 Show description in modal box View details on IPR002641 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51635 View details on PS51635 Search for proteins/transripts with this domain View external data on PS51635	64	259	196	32.266	IPR002641 Show description in modal box View details on IPR002641 Search for proteins/transripts with this domain View on EBI InterPro Service
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	98	120	23	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	404	425	22	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006629 View details of GO:0006629 AmiGO InterPro QuickGO	Biological process	Lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.	Subterm of View details of GO:0044238 View details of GO:0071704

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0274100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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