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LotjaGi6g1v0274600.2

Overview

Field Value
Gene ID LotjaGi6g1v0274600
Transcript ID LotjaGi6g1v0274600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Photosystem I reaction center subunit III; TAIR: AT1G31330.1 photosystem I subunit F; Swiss-Prot: sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III, chloroplastic; TrEMBL-Plants: tr|I3SN70|I3SN70_MEDTR Photosystem I reaction center subunit III; Found in the gene: LotjaGi6g1v0274600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59145427..59146104) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCTCTCACAATTCCCACAAACCTCTCCAAACCCACCACCTCCCTCAGGCCAAAACTCACCACCACCAAGCCAAAACC CACCATCATCTGCAGCAGCAGCAGCACCACCCCAAACCCAGAAAACTCCGATGTGTCATCACAACTGAAAGCCTTCTCCG CCGCACTAGCCCTCTCCTCAGTCCTCCTCTCCGCTCCACTCCCGGCCGTCGCCGATATCTCAGGCCTGACACCATGCAAG GAGTCAAAGCAGTTCGCCAAGCGCGAGAAGCAGTCAATCAAGAAGCTGGAATCCTCTCTGAAGCTCTACGCTCCAGACAG CGCGCCGGCGCTGGCGATCAAGGCTTCAGTGGAGAAGACGAAGAGGAGGTTCGACAACTACGCCAAGCAGGGTCTTCTCT GCGGAGCAGATGGGTTGCCGCATTTGATTGTGAGTGGTGACCAGAGGCACTGGGGTGAGTTCATCACTCCCGGGGTTTTG TTCCTGTACATCGCCGGTTGGATCGGGTGGGTTGGTCGGAGCTACTTGATTGCGATCCGTGATGAGAAGAAACCGACCCA GAAGGAGATTATCATCGATGTTCCACTTGCTTCCAGTTTGGTGTTTAGAGGATTCAGCTGGCCTATTGCTGCTTACAGAG AGTTCTTGAATGGTGAACTTGTTGCTAAGGATGTCTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0274600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTCTCACAATTCCCACAAACCTCTCCAAACCCACCACCTCCCTCAGGCCAAAACTCACCACCACCAAGCCAAAACC CACCATCATCTGCAGCAGCAGCAGCACCACCCCAAACCCAGAAAACTCCGATGTGTCATCACAACTGAAAGCCTTCTCCG CCGCACTAGCCCTCTCCTCAGTCCTCCTCTCCGCTCCACTCCCGGCCGTCGCCGATATCTCAGGCCTGACACCATGCAAG GAGTCAAAGCAGTTCGCCAAGCGCGAGAAGCAGTCAATCAAGAAGCTGGAATCCTCTCTGAAGCTCTACGCTCCAGACAG CGCGCCGGCGCTGGCGATCAAGGCTTCAGTGGAGAAGACGAAGAGGAGGTTCGACAACTACGCCAAGCAGGGTCTTCTCT GCGGAGCAGATGGGTTGCCGCATTTGATTGTGAGTGGTGACCAGAGGCACTGGGGTGAGTTCATCACTCCCGGGGTTTTG TTCCTGTACATCGCCGGTTGGATCGGGTGGGTTGGTCGGAGCTACTTGATTGCGATCCGTGATGAGAAGAAACCGACCCA GAAGGAGATTATCATCGATGTTCCACTTGCTTCCAGTTTGGTGTTTAGAGGATTCAGCTGGCCTATTGCTGCTTACAGAG AGTTCTTGAATGGTGAACTTGTTGCTAAGGATGTCTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0274600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLTIPTNLSKPTTSLRPKLTTTKPKPTIICSSSSTTPNPENSDVSSQLKAFSAALALSSVLLSAPLPAVADISGLTPCK ESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKASVEKTKRRFDNYAKQGLLCGADGLPHLIVSGDQRHWGEFITPGVL FLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLVFRGFSWPIAAYREFLNGELVAKDV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 43 43 - –
PANTHER
PTHR34939:SF1
1 225 225 6.4E-117 –
PANTHER
PTHR34939
1 225 225 6.4E-117
IPR003666
Pfam
PF02507
59 224 166 1.9E-80
IPR003666
SUPERFAMILY
SSF81536
72 224 153 1.12E-54
IPR036577
Gene3D
G3DSA:1.10.8.110
72 225 154 2.8E-70
IPR036577
TMHMM
TMhelix
155 177 23 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009522
Cellular component Photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
Subterm of
GO:0009538
Cellular component Photosystem I reaction center A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin.
Subterm of
Part of
GO:0015979
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0274600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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