Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0282500 |
| Transcript ID | LotjaGi6g1v0282500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA (Guanine(9)-N1)-methyltransferase; TAIR: AT5G47680.1 tRNA (guanine(9)-N1)-methyltransferase-like protein; Swiss-Prot: sp|O14214|TRM10_SCHPO tRNA (guanine(9)-N1)-methyltransferase; TrEMBL-Plants: tr|V7BRC2|V7BRC2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0282500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59908609..59911988) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATCCCAGTCCCACTGGGTGCGAGGATACACAATATATACTTGAATAATAAGCACTTCTGTGTTTCTCCCCGGAAAA TTTTAATTTTGGGGAAAAACAAATCCCTAGTACCAACAATGACGGAAGCGCACGGCGATGCCGGAGTTTCGCCGGCGAAG ACGGCTACGGCGACGGTAGAGCCTCAAAATGACGGAAAGGCCCTCGGGGAGGAAGAGGAGGAGGAGCCTTGTGGCGTTGT CTTGTCGAAGAACGCGCAGAAGAAGCTGGCGAAGCAGCAGAGGTGGGAGGCGAAGAAGGCGGAGAAGAAGGCGGCGGAGA AGGAGCAGAAGAGGAAGGAGGTTGAGCGGAAGCGGAAGGAGTGGGAAGAGAGCCTGGCCGGTCTCACTGAGGAGGAGAGA GCGAAGCTTGTGGAGTCGCGAATGAGTCTCCGTAAGGAGAGGATGGAGAAGAGGAACGTGGAGAAAGATTGCAGAAGGGA GAGACTCAATCGAGCTAAAGACGAAGGCCAAAACGTCGTCGTTGATCTCGAATTCTCTCACCTCATGAACCCTAACGAAA TCCGCAGCCTCGTTCAGCAGGTAATAACAATGAAATGAGATTTTGTTCAATTAGGCTTACTTTCAACTTTCAAGTATGTT AGAGAATCATTCATTATATGAAAATGGTATTCAAGGGTCTTCACTAGAATGTTCATTGTTTATGGATCAGTATGAAAACA TTGTACCTATTAGAAGCAAATTTTAGTATGAACTCATTTTTTGAGCTGTTGAGTAGGAAAATTAGTTTCAAAAGATATAA AATTTTCATAGTAGTTTATAATGGAAATCATGCTAAAGGTCTCTATCAAATTAGCAGTGTTGTTAATTGCGGATGGCGGG TCATGGCGGAAAGCTGAAATCCTGCCATACATGACAAATAATGGCGGAATATTGCGGCCATATGGCGGGATATCGGCCAT GGCGGAAAGCCAAAAAACCGCCATGAGAAACTGCCATGGCGGATATTTGATAACACTGCAAATTAGTCCCCTTGAATTTG TTTTGTAGTTAAAAAGTGAACCTCAAAGTACCTGATGAGAGTTTGAACTATAACATGACCAAAAGGTGTATCTTTTAAGA ACTAGTTTTGACTATTTACTCATTATGAAATGAATTCTAAGAGTAAAGAATATGTAATTTAACATGAGACCAGTTGTAAG AGCGGATGAGAAGAAAGAGAAAAGTAGATAGATGTAGAGAGAACGGTGTTGTTAAGCATGGATCGTGGAAAATAGCGGAA AGCCAAAAATCCGCTATGTCAAGGACTCATAGCAGAAAATAGCGGACATCGGTGAGCCCTCAAAGCGTTACGCTATAGCG CTGCGATATCTGCTATTTGACAACATTGAGAGAGAAACAAGTAGAAGATTGGAAGTTAAAAATTTCTTTACAATTACATA TTGTAAAAAAGTAATGAATTACTGTTTGGAATTAGCATTTGTTTGTGTGATTGGATGATTGTTGCACCCTTGATTTTGAA TGAGCAAGAATTTGTTGAATTGGTGTTACTTACAATCGAGTTTAAGGTGAAGAATTTATGAATGGAAAAATTTATCTTAA ACTTTATAGGAAATTTTAGTCAAACCTTTTCTGTGCGAGCTTGATTTTGATGAAATCTGTTTTATAGAATTTGGATGTTT GCTCGAGTTATTGAGGGCAAATCCCAACATATTTATTCATTACTTTTTATCATATATTTTTATACTATGGAATCATGTGC AGGTTATGTATTGCTATGCGGAGAATGGAAGATGTGCTTCCCCTGCTCATCTTTGGCTCACTGGCTGCGAAGGGGAAATG GGAAACCAGTTGAAAAGGATTCCGGGCTTTGATAAGTGGATAATAGAGACGGAAAACAGGTCCTATATTGAAGCATTGCA AGATCGTAAGGAAAATTTGGTGTATCTCACGGCAGATTCAGAAACTGTTCTTGAAGAGCTTGATTTGAAGAAGATATATA TTATTGGTGGGTTAGTGGATAGGAACCGGTGGAAGGGTATAACCATGAAGAAAGCACAAGAGCAAGGAATCCAGACAGCT AAACTCCCAATTGCAAATTTCATGAAGATGTCTAGTTCTCAGGTATTGTTTATCTTAATAGCTCTTTCTTTTTCTTTTTC TGAGAAATTGGATCTATCAAGTGGCATTTATAAAAGTAAATCATTGCACATCTTGTGGCATTATGCTTCGTTTTTCCTTT CCTCCTTCTGTTGAACTGATCATGTCATCTGCAAGTGAGACTTTGTTGTGGTTAATTGAACCTTGAATGCCACAAACTTT GTCCTGATGGATGCTGGTGTCAAAGTTCTCAATTGATAAGTTGCATGTTTGCAGAGAACTTGTTTCTTTGAGTGTGCACC TTTACCCTGCAAAGCCTTCTGATATCTGACAAGTGACAACATTGTAGTTTTCCGCTTAGAAAATGTTAAATTTCCTTTTG TATCCTAAACAGGTTCTTACTGTGAATCAAGTGGTAGAAATACTACTCAAGTTCCTAGAGACAAGGGATTGGAAGACTTC TTTCTTTAGTGTTATCCCTCAGAGGAAAAGATGTCAAGCCGGTTCAGAAGGAAATGCTGAAGATACATTAGAGGAAGAAT GTGAAGAAAAAGGCGATGCAATGGAAAGTAAAAAGAAATGTATTGAGGTAGTCCCCTCTAACTGTTAGAAACTTGGAATA GACACTGGCAACAACCTTAAAGTATTCCCTCAAACATAGTGGTCTTCTCCAACACATCAAGACACAAGGTTCAAAATCTG AGCTTTCCCGTGCACTCTTCATAGTTCATGAGAACTAGCAAAATATTTGTATTCTTTTTGACGAAAACTGTTACCAGATT TTGTATTAGTTTTTTCTTTAATATGAAATGTAGTGGATTTTAGACATATTTTGTGAGGGAAAATAATTTTACATAATATT ATGTAATACATAATACATAGTTTAGTTCAGTTCCTCCCCTTCCCCCAATGAGGTCATTTTCTTTCTGTAGGTAGGATTTC TCCTCCCCTCTCCTCCATGTTCTTATCCACCCTTCTTCACCGCCACCTGTTGTTTCTTCTACCTCTCACCGCCATCACCT CTGATTTCTCCTTCTCCCATTGCCCTGCTTTGCCTCTCTTTTTTTAGTATCATCATCCTTTCTCCACCTTGGTTTGCAGC TTCAGCCAACTTCATGTGCCTTACTTGTTGCGGTTGAGCCGCCTATTTCATTGTCATCTCTTTCAACCGAGCCTGTGGGG CCTAAAGATAAGGGCAACGAAGAAAATCAAAGAATAGGATCTAAGAAATATTTTAACTAAAGGCTTAGTTTGATGTAAAA TCTAACTTTAAATATATGCT
CDS sequence (LotjaGi6g1v0282500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGAAGCGCACGGCGATGCCGGAGTTTCGCCGGCGAAGACGGCTACGGCGACGGTAGAGCCTCAAAATGACGGAAA GGCCCTCGGGGAGGAAGAGGAGGAGGAGCCTTGTGGCGTTGTCTTGTCGAAGAACGCGCAGAAGAAGCTGGCGAAGCAGC AGAGGTGGGAGGCGAAGAAGGCGGAGAAGAAGGCGGCGGAGAAGGAGCAGAAGAGGAAGGAGGTTGAGCGGAAGCGGAAG GAGTGGGAAGAGAGCCTGGCCGGTCTCACTGAGGAGGAGAGAGCGAAGCTTGTGGAGTCGCGAATGAGTCTCCGTAAGGA GAGGATGGAGAAGAGGAACGTGGAGAAAGATTGCAGAAGGGAGAGACTCAATCGAGCTAAAGACGAAGGCCAAAACGTCG TCGTTGATCTCGAATTCTCTCACCTCATGAACCCTAACGAAATCCGCAGCCTCGTTCAGCAGGTTATGTATTGCTATGCG GAGAATGGAAGATGTGCTTCCCCTGCTCATCTTTGGCTCACTGGCTGCGAAGGGGAAATGGGAAACCAGTTGAAAAGGAT TCCGGGCTTTGATAAGTGGATAATAGAGACGGAAAACAGGTCCTATATTGAAGCATTGCAAGATCGTAAGGAAAATTTGG TGTATCTCACGGCAGATTCAGAAACTGTTCTTGAAGAGCTTGATTTGAAGAAGATATATATTATTGGTGGGTTAGTGGAT AGGAACCGGTGGAAGGGTATAACCATGAAGAAAGCACAAGAGCAAGGAATCCAGACAGCTAAACTCCCAATTGCAAATTT CATGAAGATGTCTAGTTCTCAGGTTCTTACTGTGAATCAAGTGGTAGAAATACTACTCAAGTTCCTAGAGACAAGGGATT GGAAGACTTCTTTCTTTAGTGTTATCCCTCAGAGGAAAAGATGTCAAGCCGGTTCAGAAGGAAATGCTGAAGATACATTA GAGGAAGAATGTGAAGAAAAAGGCGATGCAATGGAAAGTAAAAAGAAATGTATTGAGGTAGTCCCCTCTAACTGTTAG
Protein sequence (LotjaGi6g1v0282500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEAHGDAGVSPAKTATATVEPQNDGKALGEEEEEEPCGVVLSKNAQKKLAKQQRWEAKKAEKKAAEKEQKRKEVERKRK EWEESLAGLTEEERAKLVESRMSLRKERMEKRNVEKDCRRERLNRAKDEGQNVVVDLEFSHLMNPNEIRSLVQQVMYCYA ENGRCASPAHLWLTGCEGEMGNQLKRIPGFDKWIIETENRSYIEALQDRKENLVYLTADSETVLEELDLKKIYIIGGLVD RNRWKGITMKKAQEQGIQTAKLPIANFMKMSSSQVLTVNQVVEILLKFLETRDWKTSFFSVIPQRKRCQAGSEGNAEDTL EEECEEKGDAMESKKKCIEVVPSNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 79 | 79 | - | – | |
| PANTHER | 15 | 329 | 315 | 2.7E-108 | ||
| PANTHER | 15 | 329 | 315 | 2.7E-108 | ||
| MobiDBLite | 50 | 79 | 30 | - | – | |
| Coils | 51 | 92 | 42 | - | – | |
| Coils | 106 | 126 | 21 | - | – | |
| Gene3D | 110 | 307 | 198 | 1.9E-68 | ||
| ProSiteProfiles | 119 | 309 | 191 | 47.22 | ||
| CDD | 131 | 301 | 171 | 1.41481E-84 | – | |
| Pfam | 142 | 306 | 165 | 5.5E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi6g1v0282500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…