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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0295400 |
| Transcript ID | LotjaGi6g1v0295400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT1G11650.2 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B; TrEMBL-Plants: tr|V7C9I0|V7C9I0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0295400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61344243..61348383) extracted from Lotus japonicus Gifu genome v1.2.
GTAATTACTCAAAGATAAAACCAAATTAAATAATAAATAAAGCCCAAAAGAAAAAGATAAAATAAAAAAAAATCTAAAGC CCATCACGAAATATCTATCATCACCACTCACCTCACCGCACACTTTTCCCTTCTTTTTTTAGGGTTAGGGTTTGTTTAAA ATCACAACAGCGACTCACAATCTCTCTCTTTCTCTCTCTATCCCTCTCTCTCTCTCTCTCCGTCCAGATTCAGTGTTAGA GAGATGATGCAACCAGGACACGGCATGGCTCCACCCACCATGGTGCAGCAGCAACCGGCGCAGCAGTACCAACAGCCGCC GCCTCAGCAGCAGCAGCAACCGCCTTACGCCATGATGCCTCCCCAGGCTCAAGCGCCGCCGCCTCACATGTGGGCCCCCA ACGTCCAGACTCCGCAACAGCAGCCCGCTACCGCTGAGGAGGTCCGCACTCTCTGGATCGGCGATTTGCAGTACTGGATG GACGAGAATTACCTCTACACCTGCTTCGCTCACACCGGCGAGGTAAATCAAAATCAAAATCATCTCCCTCTTTCATCATC GTCTGTGATTATTTGAATTGCGTGTAACGGATTTGAATAGGAGTTATAGAATTGAGTCAATTCACGGTGGTTGTGTTCTG TTATTGAATTAGGGTTTGTGTGATTTTATTTTACTTTTTGGATTTGTAGGTGACGACTGTGAAGGTGATTAGGAACAAGC AAACTTCTCAGTCGGAGGGTTATGGGTTTATAGAGTTTAACAGTCGTGCTGCTGCTGAGAGAGTGCTGCAGACGTTCAAC GGGGCGATTATGCCGAACGGTGGACAGAATTTTAGGTTGAACTGGGCTTCTCTCAGTGCTGGCGAGAAGCGCCATGATGA TACTCCTGATTATACTATTTTTGTTGGTGATTTGGCTGCGGATGTTACTGATTATCTCCTTCAGGAGACATTTAGAGCTC GTTATAACTCGGTGAAGGGGGCTAAGGTTGTTATTGATAGGCTCTCTGGTAGGACTAAGGGTTATGGTTTTGTGAGGTTT GCTGATGACAGTGAGCAAGTGAGAGCTATGACTGAGATGCAAGGGGTTCTGTGCTCGACAAGACCAATGAGGATTGGTCC AGCCGCTACTAAAACCCCTGCCACCAATCAGGGTCAGCCGAGAGGTTTGTCTCTTTCGTCTTGTTGTTATAGACAACATA TATGGTTCTTTATGCTGAGAATGTCTGCTTCATATATGCTGCATACGGACTACTTCATGTGATTATGTGGGATGTTTGTT GGTTGTTTGAACTTAGGCCTGATGTCATCGAATACCTTTCCTGGTGAATGCTAGATGTTACTGTTTTAGTCTGATTCTTT TCGGTTACGCTCATGAAGATTTGCAGTCCAATCTCAATACTTCCTGCAATTTCCTTTAGAATTTGGGCTAAATCAAATAT TATGTATAATAATAAAATCTTATAGAACTCATGTTGTCTCAAAGCAGGGTGTCGAGAGGCTCTGTCATCTCGGAGCCTGG AACTGATTTCAGCTGAAATGGTTACCATTTTAGTGCATGTCCTGGCTTAGGTCAGTTAACAGTTTATGTTTGCCCCGTTA ATTTTTGTGGCATTTTCTTTTCCGCCTACAATTTCAGGTTTCGTTTGTTGGTTTATTTTTCAGTCCACTATTCTCAGCCT TTGCTTCTTAAATTTACTCCTTTAAGTTTTCCATCAGAACTACATCTCTGTATTTAGCTTTCCCTTGTGCCAAAGAAGAT CTTATTTACATTTAATAATTTCTTCTGTTCTTCTATTAGATGCCTGATTATTTCAGTTTCCAAACACCAGTCCATGAGGA TTTGTCGGGTGCCAGTATTTATTGCTTTCATTTTCTAGAAACTACACTTTAACAGGTTGATGTTTGTGTTATCATGTGGT TTTCTATTTCTGTACCCATTCTGTCGTTCCCAGTTTCAGAGTACACTGTTATGCAATTGAAGTTGTAATTTACTTTATAT GCTCATTCCTTTCTGTTAGCCTCATCTATCTCTTGTAATTCATATCTTTTGTCAAGTTCTGGGAAGTTTAAGATATAGGA TGGTGAAGATGAAGTTAAAGGCTGTGTGCCTGAGTCTATAGGTTCTGTTGTGTTATAACTTATAATGCATGGAATATATG TTCCCCCCCCCCCCCTTTTCCTTCGCTATCTTCACTTCATTCTTCCTTATTTCTTATTTTTTATTAGGTACTCTCTGCTT ACCATAGCCTGTATAAATACCTTAATTGTAAGGATGCTGAATAATCTGTGAATGTCATTGTATGACAACTATCTTCCTTG AATTATAATTTATCTGACTGCTTGGGTGATTTATTTTTTACTTCACTTCTATTGGTGAATCGTATTAAACTTCATATCTG AAGATATGTGACGTAGTACTGTGACTGATAATTTAGCTGCTTCAAACTTTATCTTATTATCTATCTATATGCTCTTGTTG ACTAATATTTTTTTTTTTGTGTTGTTGCTTCTGAGACTGCTCTATAAATATTTGCACTCCTTTTGTTCTCCATAATATTT ACTCCTTTATTTATCAGTTATCACATAATTTTTTGATGTATATTCTCTCCTTTTCTTTTGGTTTTGTTCGTAGCATTTAC ATAATGCATCTTTTTACTTTGCAGCTTCCTATCAGAACCACCCTCAAGGCTCACAAAACGAGAATGATCCATCTAATACA ACTGTGCGTATTTCTTTGCAATGTAGAAACTGCTTTCTTTCCTACTTGTTTCTGACATGAATTCTTTTACAGATTTTTGT TGGCAACTTGGATCCTAATGTCAATGATGATCATTTGAGGCAAGTTTTCAGCCCATACGGAGAATTAGTTCATGTGAAGA TTCCAGCAGGCAAGCGATGTGGATTTGTCCAATTTGCAGATAGGTAATATAATCTCTCGTATATCTGATACCTATGCTTT GTTGCTTACGCTTCATGGTGATCATGCCTTAATTTTTCATACATCAGGAGCGGTGCTGAAGAGGCACTACGGGTTTTAAA TGGAACACTGTTGGGTGGGCAAAATGTCCGTCTGTCATGGGGACGCAGTCCTTCTAACAAACAGGTAATTATATTTAGTG CATATTCTAGTGTTGGCTGCCTTGGAAACTAAGTCTTTTCTGAATCTTTTCGATGACTTTGCATGCTTTGTTTCTCAGGC TCAGCCAGATTCAAACCAGTACGCGGCTGCTGGTGGATATTATGGATATGGTCAGGGATATGAAAATTATGGTTATGCTC CTTCTGGTCAGGATCCCAATGCGTATGGCAGTTATCCAGGGTATGCGAATTACCAACCACAGCAGCAACAGCCACAGCAA ATGGGATATAGTTGAGAAATCAGTGCTTCATATTTCTGTTCTTTGTAACCCATATGCTACTTAGCGAGTTTCTTGTCTCG TTGAAAACCATTTCTGGTCCTTTTCCCGATCCCCTTTGATTGCTTTTAACATTTAAGTTATGTGAGCCGACTTTTGTATC GTTAAAAAATTGCTTGTTGAATTCTTATTTGATGTTTAGATTTGATGAAACCGTCTTTTATCTATGTTTTAAGTGCATTT TTCACGGTGTTTATGTTTTCTTTGATGTGAGCTAGTTAGTCAGCGTTGTTGGAGATCAATACTAGCTAATCCATTAAAAT TTGAAGGGTCTGTGTTCAGATTATCAGATGCCAAAACAATAGTGTTGTTTTTCTGAATTAACTCTTCATTGTAATAGTCA TGCCTACAAATTCAGTTAGGACTTTATTGTTTAAACCAGTTTTTATAAAGGTTGCCGGCAAGTTAGGGCAGTCAAAGCAT GATAGTCGATTTGATATACACTGAGAATTATGGTAGGGTCTGAAATCTAGGAATTGCTTTACTATTGAATGGTAGCCAAA TTCAAAATAGCAAAAACTAAAAAGGTTATAAATGCATGATTTATGACCAACTTTGAATATTGAAGTTGAATTGAGAGGCT GTGATCCCATGAATCGATGAAGCACTGATACCATCTATAAAGTTCAAGGCTTGGCTTTCGAAGGGAGAGGGTTTTGTGAA CTAGATGAAACTGGGAAGAGAAGAATTGATGATTGTGGCCGATTACAATTGAGGGATATGG
CDS sequence (LotjaGi6g1v0295400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAACCAGGACACGGCATGGCTCCACCCACCATGGTGCAGCAGCAACCGGCGCAGCAGTACCAACAGCCGCCGCC TCAGCAGCAGCAGCAACCGCCTTACGCCATGATGCCTCCCCAGGCTCAAGCGCCGCCGCCTCACATGTGGGCCCCCAACG TCCAGACTCCGCAACAGCAGCCCGCTACCGCTGAGGAGGTCCGCACTCTCTGGATCGGCGATTTGCAGTACTGGATGGAC GAGAATTACCTCTACACCTGCTTCGCTCACACCGGCGAGGTGACGACTGTGAAGGTGATTAGGAACAAGCAAACTTCTCA GTCGGAGGGTTATGGGTTTATAGAGTTTAACAGTCGTGCTGCTGCTGAGAGAGTGCTGCAGACGTTCAACGGGGCGATTA TGCCGAACGGTGGACAGAATTTTAGGTTGAACTGGGCTTCTCTCAGTGCTGGCGAGAAGCGCCATGATGATACTCCTGAT TATACTATTTTTGTTGGTGATTTGGCTGCGGATGTTACTGATTATCTCCTTCAGGAGACATTTAGAGCTCGTTATAACTC GGTGAAGGGGGCTAAGGTTGTTATTGATAGGCTCTCTGGTAGGACTAAGGGTTATGGTTTTGTGAGGTTTGCTGATGACA GTGAGCAAGTGAGAGCTATGACTGAGATGCAAGGGGTTCTGTGCTCGACAAGACCAATGAGGATTGGTCCAGCCGCTACT AAAACCCCTGCCACCAATCAGGGTCAGCCGAGAGCTTCCTATCAGAACCACCCTCAAGGCTCACAAAACGAGAATGATCC ATCTAATACAACTATTTTTGTTGGCAACTTGGATCCTAATGTCAATGATGATCATTTGAGGCAAGTTTTCAGCCCATACG GAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGATTTGTCCAATTTGCAGATAGGAGCGGTGCTGAAGAG GCACTACGGGTTTTAAATGGAACACTGTTGGGTGGGCAAAATGTCCGTCTGTCATGGGGACGCAGTCCTTCTAACAAACA GGCTCAGCCAGATTCAAACCAGTACGCGGCTGCTGGTGGATATTATGGATATGGTCAGGGATATGAAAATTATGGTTATG CTCCTTCTGGTCAGGATCCCAATGCGTATGGCAGTTATCCAGGGTATGCGAATTACCAACCACAGCAGCAACAGCCACAG CAAATGGGATATAGTTGA
Protein sequence (LotjaGi6g1v0295400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQPGHGMAPPTMVQQQPAQQYQQPPPQQQQQPPYAMMPPQAQAPPPHMWAPNVQTPQQQPATAEEVRTLWIGDLQYWMD ENYLYTCFAHTGEVTTVKVIRNKQTSQSEGYGFIEFNSRAAAERVLQTFNGAIMPNGGQNFRLNWASLSAGEKRHDDTPD YTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLSGRTKGYGFVRFADDSEQVRAMTEMQGVLCSTRPMRIGPAAT KTPATNQGQPRASYQNHPQGSQNENDPSNTTIFVGNLDPNVNDDHLRQVFSPYGELVHVKIPAGKRCGFVQFADRSGAEE ALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDSNQYAAAGGYYGYGQGYENYGYAPSGQDPNAYGSYPGYANYQPQQQQPQ QMGYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 51 | 51 | - | – | |
| Gene3D | 10 | 156 | 147 | 1.2E-23 | ||
| PANTHER | 19 | 398 | 380 | 2.2E-198 | – | |
| PANTHER | 19 | 398 | 380 | 2.2E-198 | – | |
| MobiDBLite | 27 | 51 | 25 | - | – | |
| SUPERFAMILY | 39 | 147 | 109 | 5.78E-22 | ||
| ProSiteProfiles | 68 | 148 | 81 | 16.057 | ||
| SMART | 69 | 144 | 76 | 1.3E-14 | ||
| CDD | 69 | 147 | 79 | 1.39291E-45 | – | |
| Pfam | 70 | 135 | 66 | 7.5E-13 | ||
| SUPERFAMILY | 152 | 261 | 110 | 5.16E-21 | ||
| CDD | 160 | 239 | 80 | 5.0773E-46 | – | |
| Gene3D | 160 | 236 | 77 | 1.4E-18 | ||
| ProSiteProfiles | 161 | 240 | 80 | 15.767 | ||
| SMART | 162 | 236 | 75 | 2.7E-17 | ||
| Pfam | 163 | 226 | 64 | 4.5E-12 | ||
| MobiDBLite | 235 | 271 | 37 | - | – | |
| Gene3D | 239 | 356 | 118 | 1.2E-26 | ||
| MobiDBLite | 240 | 271 | 32 | - | – | |
| SUPERFAMILY | 255 | 368 | 114 | 4.57E-30 | ||
| CDD | 269 | 340 | 72 | 2.13561E-37 | – | |
| ProSiteProfiles | 270 | 342 | 73 | 17.711 | ||
| SMART | 271 | 338 | 68 | 2.6E-22 | ||
| Pfam | 272 | 335 | 64 | 1.5E-17 | ||
| MobiDBLite | 373 | 405 | 33 | - | – | |
| MobiDBLite | 388 | 405 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0295400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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