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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0311300 |
| Transcript ID | LotjaGi6g1v0311300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT5G46170.1 F-box family protein; Swiss-Prot: sp|Q9FNK5|FB285_ARATH F-box protein At5g46170; TrEMBL-Plants: tr|A0A0L9VFW1|A0A0L9VFW1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62980614..62983798) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACTCTTTCTTAACTCATTCATCCAATTGATCCCTGGCAAGCTCTTTTAAAGTACAAGTCACTAGCAAGGATCCATT AATTGTGGAAGAACAACAAACAAATGATACTGAAATCGACAATAGAAAATAACTAAGAAAAGTAAATAAATAAAGTGAAA GATAATTTATAGTAGTAATTAACTAGTAATTGACAATCTTAGATCACAATCAAACATGTATTTAATACAAAATCTAATAT ACTAGTACCTAATTTTCATTGCAGCATATTATAGAAAACCACCACTAGTAGTTACATAGAATTAAAGCATGTACATGTTG AAACTAATGGCTACTTAAATTAAAAATTAAAACACACAATAGTGACAATACAAATATACAATAAGAATAGAGACAAAGAA ATTTACTATAGTAATAGTAGCTAGTAGGGGAAGAAGGTAGCACCAATGACACACACAAACACAAACACAAACACAAACAC AAACACAATCACAATCACACCCTCTACCTCTACCTCTACCTCTACCTCTACCACTGATTCATTCACCTTTCAACATCTCT CTCCTTCTCTCTCCTATTTCGGCATGGTTCTTATGCTTGAACCTTCTTCACAATCACAGATCTGAACAACCAAACCCTAT CCCTATTCTCATACCAAATATGTGTTCTCTCCGTGCAGATCAGATCTACCCAGACCCAGATGCCTTCGGATTCGGAATCG GAATCGGAATCGACCACTTCGATCGCCTCCCTGACTCTCTCCTCCTCCTCGTCTTCAACAAGATCGCCGACGTCAAAGCC CTAGGTCGCTGCTGCGTCGTTTCCCGCCGCTTCCACACCCTCGTCCCTCAAGTCGAAAACGTCGTCGTTCGCGTCGACTG CGTCATCTCCGACGACGACTCATCTTCCTCCTCCGCCGCCTCCGACAAATCCCGCGGCCCCTTCTGGAACCTCCTCCGCC TCGTCTTCGGCGGCATCGCCAAACCCATCCAGACTCTGGGTCAGTTCCTGGGTCCAAAGAGAGCTTCCTCGTCTTCCTCC TCCTCGCCGCTTGCAGTTGGGAGTGAAGACGACGGCGACGGCGGCGTCACCCACCACTCCCCGACGCAGGTTTTGAAGAA TTTCAACGAGATTCGGTTGCTCCGGATCGAGCTTCCTAGTGGGGAGTTAGGGATAGAGGATGGGGTTTTGTTGAAGTGGA GAGCTGATTATGGTTCAACTTTGGACAATTGTGTGATTCTAGGTGCGTCTTCAGTGTCTCACCCTAAGTCGCAAGATGGT AATAGAGTTGATGCTGCTGCTGCTTCGTGTGGTAGTGATGACAATGGAAGCATACCTGATTCGTTTTACACAAATGGGGG TCTCAAATTGCGGGTTGTTTGGACGATTAGCTCGTTGATTGCTGCATCTGCTAGGCATTACTTGCTGCAACCCATCATTT CAGAGCACAGGACTTTGGATCATTTGGTGTTGACAGATGCTGATGGTCAGGGAGTGTTGTATATGAATAGGGACCAGCTT GAGGAGCTGAGGGTGAAGCCGCTTTCGGCTTCGTCTGCGTCGAAGAGGACTCTTGTCCCTGCTCTTAATATGAGGCTTTG GTATGCACCCCACTTGGAGTTGCCTGATGGGGTTGTGTTGAAAGGTGCTACTCTTGTTGCAATTAGACCCAGTGAGCAGT CCCCTGCTACCTCAGCGAAGAAGGAAGCTTCGGATTTGTCTTGGGTGTCAACAGCATTTGAGGAGCCTTATAGGACAGCA GCCACAATGCTAGTGAAGAGGAGGACTTATTGCCTTGAGATGAACTCCTTCTGATGCTTTGTGGTTGGCTGGTTGGATCG AAAGGTATAGATTTCCTTACAATTGTTGCTACAATCTTGTATTTTACTGCTTAGTCCTTCAACTGTTCAACTTGATATAG AAATGGAGTTGTGATCTTGTTTTTGTGCTAAACAAGTTACTGTTGAATGTTAACTTTCATGTTGCTAAGGATCATTGCAT GATAGATTGTTGAATTGCCATGCTTGAAATAACTGTAAGTCTAACCTGAGTGTGTGTCTGCCTGCTAACTGAATCTGCTT TTGTCCTGTTGTCCAAATATGTTCCTTTGGTACGATTTTCTCAGGTTAGGTTTGGGACTAATTTTCTTTCCCGTGCGTTG CAAGTTCTTAATTCTAAGAGCTCTTCATTGCTACACTTCAACTTTATGTTAAATTCTGTTGTAGTAATAGCTTCTATATG ATGTATCTGTTATAGAATGCAGTGTGTGCCATGTTATGTCGTTCGATTGGGATATTGTGTGGAATGCCTATTTCCTTGTG CTTTGAGGCTTGCTTATCCAGGGTTTCTGGGGACTTGTCTAGATTTACCTTGAATTTCCCTCACTGTTATTTGGTTTCTA TGTTATGATTGTTCCCTGATTCATGTTATTAGATTCTTTGAATTTAGCACTACTAACCATTGTTCCTTCTTTCAAAGTTC TAAACTCTTATTTGCTGATAATGAAAATTTCAGGGAATGCCGAATCATTTGATAATCGGGGAACGCTAAGTTCCTCATAG AAGGAATCAGAAACACAAATTTTCTTTGGGCATATACATCAAGTGGAAGCAGTTGGGCCAACTAAATCTTGCTCTTTCCA GCTTCTGAAACTGTGGCCCGCATTTGAGTAGTTATTAAAAGAGCTGAAAATCATTCACCTATCTTGCGTGGACCGAAAAC TGAATGCATCTGCTGGTTTTTTAATATGAGGCAATGCTGATATTGTAAGAGCTTTGAGTTTGTAGTCATCTGCCTTCTAA AGGTCTCCCTCTGTGAATATTCTAGGTATCAGTTTGGTTTGCCTTTGTGATATATATTTCTCAAGTTAAACGAGCAATGT ACTTTTGCTTTTGTAATTTTAAATAACTTGTGGATGAGAGTCAATCATACCATGCATACTTGTTCCTGTTTGAAGTTTTG TTGTAGCTAAAGTGAATCATATTAGTATTTCCCAAGTTACTCATGAGAATTTGTTAAACAATTAAGGAGCTGAAAGTCTT GACTTTCTTAATATGCGACTTTGTAAGCTGATTTTGATTTCACACCAGTACAAAACCCTTTGTTTTTTGAAATTCAAAAC CCATTCTTAATAGATCAAAATCATAGATGTTAATAAAAGTGTATGTTTATTAAATTATTACGATC
CDS sequence (LotjaGi6g1v0311300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTTCTCTCCGTGCAGATCAGATCTACCCAGACCCAGATGCCTTCGGATTCGGAATCGGAATCGGAATCGACCACTT CGATCGCCTCCCTGACTCTCTCCTCCTCCTCGTCTTCAACAAGATCGCCGACGTCAAAGCCCTAGGTCGCTGCTGCGTCG TTTCCCGCCGCTTCCACACCCTCGTCCCTCAAGTCGAAAACGTCGTCGTTCGCGTCGACTGCGTCATCTCCGACGACGAC TCATCTTCCTCCTCCGCCGCCTCCGACAAATCCCGCGGCCCCTTCTGGAACCTCCTCCGCCTCGTCTTCGGCGGCATCGC CAAACCCATCCAGACTCTGGGTCAGTTCCTGGGTCCAAAGAGAGCTTCCTCGTCTTCCTCCTCCTCGCCGCTTGCAGTTG GGAGTGAAGACGACGGCGACGGCGGCGTCACCCACCACTCCCCGACGCAGGTTTTGAAGAATTTCAACGAGATTCGGTTG CTCCGGATCGAGCTTCCTAGTGGGGAGTTAGGGATAGAGGATGGGGTTTTGTTGAAGTGGAGAGCTGATTATGGTTCAAC TTTGGACAATTGTGTGATTCTAGGTGCGTCTTCAGTGTCTCACCCTAAGTCGCAAGATGGTAATAGAGTTGATGCTGCTG CTGCTTCGTGTGGTAGTGATGACAATGGAAGCATACCTGATTCGTTTTACACAAATGGGGGTCTCAAATTGCGGGTTGTT TGGACGATTAGCTCGTTGATTGCTGCATCTGCTAGGCATTACTTGCTGCAACCCATCATTTCAGAGCACAGGACTTTGGA TCATTTGGTGTTGACAGATGCTGATGGTCAGGGAGTGTTGTATATGAATAGGGACCAGCTTGAGGAGCTGAGGGTGAAGC CGCTTTCGGCTTCGTCTGCGTCGAAGAGGACTCTTGTCCCTGCTCTTAATATGAGGCTTTGGTATGCACCCCACTTGGAG TTGCCTGATGGGGTTGTGTTGAAAGGTGCTACTCTTGTTGCAATTAGACCCAGTGAGCAGTCCCCTGCTACCTCAGCGAA GAAGGAAGCTTCGGATTTGTCTTGGGTGTCAACAGCATTTGAGGAGCCTTATAGGACAGCAGCCACAATGCTAGTGAAGA GGAGGACTTATTGCCTTGAGATGAACTCCTTCTGA
Protein sequence (LotjaGi6g1v0311300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCSLRADQIYPDPDAFGFGIGIGIDHFDRLPDSLLLLVFNKIADVKALGRCCVVSRRFHTLVPQVENVVVRVDCVISDDD SSSSSAASDKSRGPFWNLLRLVFGGIAKPIQTLGQFLGPKRASSSSSSSPLAVGSEDDGDGGVTHHSPTQVLKNFNEIRL LRIELPSGELGIEDGVLLKWRADYGSTLDNCVILGASSVSHPKSQDGNRVDAAAASCGSDDNGSIPDSFYTNGGLKLRVV WTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLE LPDGVVLKGATLVAIRPSEQSPATSAKKEASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 22 | 62 | 41 | 2.62E-7 | ||
| PANTHER | 23 | 384 | 362 | 4.6E-182 | – | |
| PANTHER | 23 | 384 | 362 | 4.6E-182 | – | |
| Gene3D | 24 | 65 | 42 | 5.1E-5 | – | |
| MobiDBLite | 121 | 148 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0311300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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