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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0320700 |
| Transcript ID | LotjaGi6g1v0320700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho termination factor; TAIR: AT4G18740.1 Rho termination factor; Swiss-Prot: sp|Q8L4E7|BP73_ORYSJ SAP-like protein BP-73; TrEMBL-Plants: tr|A0A1J7G4I8|A0A1J7G4I8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0320700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63719489..63720681) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGTGTGGACTAGCTATTTTGTAACATGTGAAATGAAATAATAGCAAATAATTGTAAAATAAATGGGGAGGTGGTTTG TGATTCTAATTCATTTGTGAATTTCAGAATCTGGAATTTGTTTCTGGGAAAGATGAATGCGGTTGCATATCATTCACATA ATCTTCTTTGTTTTTCCATGTGTTTCTCTTTCAGCAAGCAGTGCTATTTAGGAAAATCTTGTCTACATATGAAAGGTACT ATCTTCCTTTCTTATTTCCTTTTTATAGGTGGAGACATGATTCTTTGTTGAATTGGCAGAGATTGCAATTCAACCTTCAC CCTTTGTGTCCCACAAGGTTTTCTCTCCATTTTCTGATTCAAGAATAAGAGCTGATGGAGACAGAGTTGTTCAAACCAGT GGGAGAACTGAAAAGAAGAGACCTCAATTATTTGATGGTAAAAAATCAAAGTCTTCTGACCAGGAAGAGATAATTGCTCT GTTCAGACGGATACAGTCTTCAATATCAAAGAGAGGGTCACTAGAAACCAGGAAGAGGAGCTACAAGGATAAGCCTAACT CCACTGAATCACTTCTAGATATTTTTGATAAACCAAAAAAGCAAGTGAAAGGTAAGTTACAGTTTTAGATTGTTTTTTCC ATTGTGTTTCTATCTATTTCTCATCTGATTCAGGCAAAATTTCAGGCAGGGCAAAAGGATCCAGGAAAGAGGAAGAGGCA CCTGAAATGGAGTTTAAGTTGAGTCGACTGCCATCAAATTTTGTAAAGAAATCCCCAATTCCATATCTATCAATCCCAAG AGGAGAGGTTATTGAGCTAACAAAGGAAGCAGTGCCAACTATTGAGGGGGGTAAACAGGTACAATCAAAGAGACTTGAGA AGCTGAAACTTGGTGAGTTGAAAGCACTAGCTAAGTCAAGAAGAGTGAAAGGTTATTCTAAACTAAAGAAGGAGGAACTT GTTAAAATACTTAGGTCCTAGATCAAAATTAATCCACAATTTATACTTATCAAGCAGGTGGTTTCCAGTTACTTTGTGAG TTGTGACCCAGTTAATATATATTTTTCTTAAAGGGCTTAAACTAATACACTATCACTCGCTCTCTAGCTGATCTAAGAGA ATGCTAACAGACTCAATTAGAATATGTGGTAATTAAATACAATTAAGAGTTCTGTTAGAGAGATATTCAAAAT
CDS sequence (LotjaGi6g1v0320700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGCGGTTGCATATCATTCACATAATCTTCTTTGTTTTTCCATGTGTTTCTCTTTCAGCAAGCAGTGCTATTTAGG AAAATCTTGTCTACATATGAAAGAGATTGCAATTCAACCTTCACCCTTTGTGTCCCACAAGGTTTTCTCTCCATTTTCTG ATTCAAGAATAAGAGCTGATGGAGACAGAGTTGTTCAAACCAGTGGGAGAACTGAAAAGAAGAGACCTCAATTATTTGAT GGTAAAAAATCAAAGTCTTCTGACCAGGAAGAGATAATTGCTCTGTTCAGACGGATACAGTCTTCAATATCAAAGAGAGG GTCACTAGAAACCAGGAAGAGGAGCTACAAGGATAAGCCTAACTCCACTGAATCACTTCTAGATATTTTTGATAAACCAA AAAAGCAAGTGAAAGGCAGGGCAAAAGGATCCAGGAAAGAGGAAGAGGCACCTGAAATGGAGTTTAAGTTGAGTCGACTG CCATCAAATTTTGTAAAGAAATCCCCAATTCCATATCTATCAATCCCAAGAGGAGAGGTTATTGAGCTAACAAAGGAAGC AGTGCCAACTATTGAGGGGGGTAAACAGGTACAATCAAAGAGACTTGAGAAGCTGAAACTTGGTGAGTTGAAAGCACTAG CTAAGTCAAGAAGAGTGAAAGGTTATTCTAAACTAAAGAAGGAGGAACTTGTTAAAATACTTAGGTCCTAG
Protein sequence (LotjaGi6g1v0320700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNAVAYHSHNLLCFSMCFSFSKQCYLGKSCLHMKEIAIQPSPFVSHKVFSPFSDSRIRADGDRVVQTSGRTEKKRPQLFD GKKSKSSDQEEIIALFRRIQSSISKRGSLETRKRSYKDKPNSTESLLDIFDKPKKQVKGRAKGSRKEEEAPEMEFKLSRL PSNFVKKSPIPYLSIPRGEVIELTKEAVPTIEGGKQVQSKRLEKLKLGELKALAKSRRVKGYSKLKKEELVKILRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 236 | 236 | 1.3E-59 | – | |
| PANTHER | 1 | 236 | 236 | 1.3E-59 | – | |
| MobiDBLite | 60 | 86 | 27 | - | – | |
| Gene3D | 191 | 236 | 46 | 7.3E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0320700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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