Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0322300 |
| Transcript ID | LotjaGi6g1v0322300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF688 family protein; TAIR: AT1G29240.1 transcription initiation factor TFIID subunit, putative (DUF688); Swiss-Prot: sp|B6IQ27|PYRG_RHOCS CTP synthase; TrEMBL-Plants: tr|A0A0B2PGQ3|A0A0B2PGQ3_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0322300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63840117..63844289) extracted from Lotus japonicus Gifu genome v1.2.
TGAATTTCTTTTCTGTGTATTGAATAGAAAATTTCATGTCAAATCACATCAATGACAAGTAAAAACAATTTTGGAATTTA TCAACTCATCATTTCCAAACATTCTATGCAGAGATACATTCACTATAGTACTAGTTTACTCATTCACTGTCTGTAAACTG AGAATAATACATAGGCAAAACAAAAGCAATAGTGAAGGTTGTGTCTCTATCTGCCTCATCTTTCTCTGGCTTTTCTTCAG TCCTACTCATTCCTCCCATACTCCACGGCATCATTTAGCAACCAACCATTCCTTGCAAGCTCTCATCTTTTTCATGACAC TGTGGATTGGGACTCTCTCACCTCTGCACATGTATTGCTCCTTTATCATTATTTCATATTTTCATGTCCTTGCTGCTTTT TTCTTTGTCCAATTTTAGCTGCTCCACATCACCATGTTGTTGACAAAAGCTTACTCTAACTCTACATAGCTACTCATTAC TAAAACCACTTTCCCATTTACTTTTCTCTGCAAGAAAAACCTTCTCTTGGATCACATTCTTCTGCTTCAGTGAGTCCAAC TTCATTGTTTTCAAGCTGTTATTGAAGAATCAAGAGGTTTGATCTTTTCTTCCTTTACCAATTCTCTTTCATTAGTAGTA TTATTACTCTAGTGGGTCCTTAAATTGAGATTGTGATGCGGATGAAGGTGCTCATTGCTCTTGCACTATTCAATTCATTG ATTAGATTTATATATAGTACTAGTGTATCTGCTATAGTGCTATTGTTGATTGTGTATATTGCTGCACTTTACTCTCTCTT TCTCTCTCTGCCTGGTGGCAGGGGAAAGGGTCATTTCAGTGATCAGTATTTCAGTACCATGTCATGAATGTTCAGTTAGT AGTTGTGTCTGTGGTGCTTCTCAGTTCTCAGTTCAATTTCTGTGGAATTGAAGCAGATAATTTGCAATTCAAGCTGTTAA TTAAATCATCAGTTCTTCATCTTTTTTTCATGATTGGGTTGTGCTTGCAGGTAATATTGGGTCTTTGTGCTGAAATTGTC TTGAATCCTTCCCTTGTGATTGATTAAGAGGTGCTTCATACTTCATAGACAAGTTGTTCAATTTTGGAACAAGATGTCTG AGAGGAAATTGAATATCAATGCTCCTCTCATGTCGGTGAGACGCTCTTCTGCTACATCACCATCCTTAACTGAAGCAAGG AAGAAGATATTAGAGAAACGCCATACCCTTGCATGCAACAAATCAGACATGTCATTGGATCAGGTAACTGAACCTGTTGC AGTACCTTTCAATTGGGAGCGCATACCCGGAAGATGCAAGAGCAACAAAGGTGGATCTGAACCTCAACTTCCTAAGAACC CTTCAACTACTCAAATACCTAAGCTTCCCCCAGGAAAATCTATCAATTCTACTAAACAGCCTTTGGAAAAGGAAAGTAAA GTTGCAAATAAATTCAGCTCCTCAAATAAATCAAAGTCTTTCAGTAGTAGCATGGTCAATATAGATGCTGACAGAGAAAG AAAAGCTGAGAGAAATGTAGAAAGAACAAGGTTCAATGATGTGAATGAGGAAGAAGAGGAGGATGTTTATTCAGATGCTC TTCAAACACTTTCACCTACAGAATCATACTCCATGAACTGTAGTGTAAGCGGTGTGAGCGGGTTAGATACTTTGGATGCA AATGCAAAGAAGTTTGGAAACTTTTCTACAGATCAACAAACTCGAGACTTCATGATGAACCGCTTCTTGCCTGCTGCAAA GGCTATGACCTTGCAACCTCCTCAATATTCTTCCAAAAAGCAATCTGTACTAGTAGAGCAACAACCTAGAGATGTTAACA AATTGGTTCGCGAGGCGAAGAAGCCCTTGCCTAATCAATATTCCACAGATATTGTGCCATATACTAGCCATTGTCAAGAG GAATTGAAAGAAAGTGAAGATGACGATGATGATTATGACAACCCTGTTAGTTTCTCAAGTAAAGGTTGTGGGATGTTACC TAATTTACATATTAGGAACTCATTATGCTTGTTAAATCCTGTGGCTGGGATGAAAATGAAGAACCAGGTTCCTTTGTCCT CTACCAATGAGGTTGGAAAACCTAACAAAAGCTCTCATATTAGATCTTTTAGTCCAATTCCAGCTGTAAAGAAGGTACAA ACAATGGCACTATTTTATTGCACCATCCAGTCCTTTTTGTTAATCAGAATTCTCAGATATCATTCTCCAACATATATACT CACAGTTATGAATCTTTATCCTGCAGGCTTGGGATGCAATTCACAAGAACAAATCAGGCTCTGGAGCTGCATCACCTGAT ATGCTGGAGGATAGGAGAAAATGGAGCAGTGAGTCAAACAGGTTTTACTCAGGTGAGTTACAGCCTGGTAGGCTATCTCC CTTTCGTCGGTCAAGAGCTGCTGCTGCCGGTCTATCACCCTGCCGGAGTAGACCTCAATCTCCCTTTCGCGGACGTGATT CTAAAGAAACTGAAAATAGTAAATCTGGCATGCTGAGATTCCATACCACTGGACTTGGAAGTAATCAAGGGATGCTGTCC CAAGGAGGAGCCAAAAGAATGTCATATTCTGGGAACCTCGCTATCGAAAAGACTTTGTACATAGATACCACAAACACGGT TAAATTATCATCTTCAAATTTAAGTTCTGTAGATAACAAAAGGAGGATAGATACTGTGATTGCAGACTTGGACAAAAGAA GAGGGAAAGAAAGTAGTTCCACCATAGAATCTTCTCAAGGTAGAAAACATGTACAAGCTCTGGAAGAAAAGAACACCTTG GATGCTAAAGTGTTAAGTTCCATGGATGCCAATTCTTCAACTTTGCCTAGCATGTCACATCTCATCGTCAAAGAAGATAA AGAGAAAGGATTAACTACTGATCAAGATGTTAACCATGAACTAGAATTCTTGAAACTTGTGCAAGGGGCATTAGCTGAAG ATTCAAAGACCAATACCAAGCAAATTGTGTTAGCTAATGGTTCAGGAAAAGGTGGTGCTGAATCTCCTCTTCCCCCGCCA TTGCCAAAATCACCTTCTGAGTCCTGGCTTTGGCGTGCCCTGCCTACAGTTTCTGTCAAGAATTCTTTCCTGCGTTCAAA TAAAAGTTCTGAATCTCGTGCTGAAAGGCATGATTCAAATTCAACATCCAGCAATATCAAGTGGGAAACAATAGTGAAAA CTTCAAAGTTGAATCATGATCATGTACGCTATTCTCAGGTAACCTTATTGATCCCTTTGGCCATAATTTTGTCTAGCTCA ACTCTTGTAATGACCAAGATGACAATTAACTCCAACTTTCTCTGCAGGAACTAACCATGCATAAACTCCAGCATTCAAAA TCTTAGAGATGGAGCTGAGTGGCTTTACTATATGTTATGGTCCAAGCCTTTTGTGTCCTTTTTATTCTTCTCATCATGCT TATGGTATGTAGTCCTCACCTTATGGAATTTTGGCATTATAGCATAAGTAAAAATTTGGCATAGTTGATTGCATTTTCAC ACGAGTTAATTGATATTTCTCATGACAGAAAATGGGATTTATATCAGTGTAGTCCTTCAAACTTTATTTACATCAATTCA TCATATCAATCTTTAAATTTGCATCAATCAGGTATATTTACATCAATTTTACAGTGTATTCTTAATTCAGCCAAATTTAA AAGAAGAAGTAATGAACTGATGTACATTTCATTTTCTGGACCAAAATCAAAGGGAACACACAGTTTGAATATCATTTCCT CTTTTTACCTTCTCCTATTAAACATCATGTTAGTGTTATTGCTTTACCTTTCTGTTGGCTTGTGTTTCTTATATTGACTT CAAGCTCTGACACCTTTTGATTTTCTTAAATTTTATTGTAGAGAGAGATAAATCAGAATCATTTTTGGTGATCAATAAAA GCAAAGCTTCCTTTGGAGTTTGGACGCTTTTTGATACATTCAAGATTATTGGCTAGTACTACTGTGTGCCTTTGATTCCT CTTCTTACTACTTGGTCAGAGGAACGATCCTTTGTCAGCTATTTTTATGTGTCCTGACATAAGTGATTACTGTAATTCAT GCTTTATTGATTGTTTCCTTTTTATACAATTAAAGAACTCTTCTAAACATTTAGTCTGTTTTTTCTAAGCAGTACTGTAA TTCATGCTTTATT
CDS sequence (LotjaGi6g1v0322300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAGAGGAAATTGAATATCAATGCTCCTCTCATGTCGGTGAGACGCTCTTCTGCTACATCACCATCCTTAACTGA AGCAAGGAAGAAGATATTAGAGAAACGCCATACCCTTGCATGCAACAAATCAGACATGTCATTGGATCAGGTAACTGAAC CTGTTGCAGTACCTTTCAATTGGGAGCGCATACCCGGAAGATGCAAGAGCAACAAAGGTGGATCTGAACCTCAACTTCCT AAGAACCCTTCAACTACTCAAATACCTAAGCTTCCCCCAGGAAAATCTATCAATTCTACTAAACAGCCTTTGGAAAAGGA AAGTAAAGTTGCAAATAAATTCAGCTCCTCAAATAAATCAAAGTCTTTCAGTAGTAGCATGGTCAATATAGATGCTGACA GAGAAAGAAAAGCTGAGAGAAATGTAGAAAGAACAAGGTTCAATGATGTGAATGAGGAAGAAGAGGAGGATGTTTATTCA GATGCTCTTCAAACACTTTCACCTACAGAATCATACTCCATGAACTGTAGTGTAAGCGGTGTGAGCGGGTTAGATACTTT GGATGCAAATGCAAAGAAGTTTGGAAACTTTTCTACAGATCAACAAACTCGAGACTTCATGATGAACCGCTTCTTGCCTG CTGCAAAGGCTATGACCTTGCAACCTCCTCAATATTCTTCCAAAAAGCAATCTGTACTAGTAGAGCAACAACCTAGAGAT GTTAACAAATTGGTTCGCGAGGCGAAGAAGCCCTTGCCTAATCAATATTCCACAGATATTGTGCCATATACTAGCCATTG TCAAGAGGAATTGAAAGAAAGTGAAGATGACGATGATGATTATGACAACCCTGTTAGTTTCTCAAGTAAAGGTTGTGGGA TGTTACCTAATTTACATATTAGGAACTCATTATGCTTGTTAAATCCTGTGGCTGGGATGAAAATGAAGAACCAGGTTCCT TTGTCCTCTACCAATGAGGTTGGAAAACCTAACAAAAGCTCTCATATTAGATCTTTTAGTCCAATTCCAGCTGTAAAGAA GGCTTGGGATGCAATTCACAAGAACAAATCAGGCTCTGGAGCTGCATCACCTGATATGCTGGAGGATAGGAGAAAATGGA GCAGTGAGTCAAACAGGTTTTACTCAGGTGAGTTACAGCCTGGTAGGCTATCTCCCTTTCGTCGGTCAAGAGCTGCTGCT GCCGGTCTATCACCCTGCCGGAGTAGACCTCAATCTCCCTTTCGCGGACGTGATTCTAAAGAAACTGAAAATAGTAAATC TGGCATGCTGAGATTCCATACCACTGGACTTGGAAGTAATCAAGGGATGCTGTCCCAAGGAGGAGCCAAAAGAATGTCAT ATTCTGGGAACCTCGCTATCGAAAAGACTTTGTACATAGATACCACAAACACGGTTAAATTATCATCTTCAAATTTAAGT TCTGTAGATAACAAAAGGAGGATAGATACTGTGATTGCAGACTTGGACAAAAGAAGAGGGAAAGAAAGTAGTTCCACCAT AGAATCTTCTCAAGGTAGAAAACATGTACAAGCTCTGGAAGAAAAGAACACCTTGGATGCTAAAGTGTTAAGTTCCATGG ATGCCAATTCTTCAACTTTGCCTAGCATGTCACATCTCATCGTCAAAGAAGATAAAGAGAAAGGATTAACTACTGATCAA GATGTTAACCATGAACTAGAATTCTTGAAACTTGTGCAAGGGGCATTAGCTGAAGATTCAAAGACCAATACCAAGCAAAT TGTGTTAGCTAATGGTTCAGGAAAAGGTGGTGCTGAATCTCCTCTTCCCCCGCCATTGCCAAAATCACCTTCTGAGTCCT GGCTTTGGCGTGCCCTGCCTACAGTTTCTGTCAAGAATTCTTTCCTGCGTTCAAATAAAAGTTCTGAATCTCGTGCTGAA AGGCATGATTCAAATTCAACATCCAGCAATATCAAGTGGGAAACAATAGTGAAAACTTCAAAGTTGAATCATGATCATGT ACGCTATTCTCAGGAACTAACCATGCATAAACTCCAGCATTCAAAATCTTAG
Protein sequence (LotjaGi6g1v0322300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSERKLNINAPLMSVRRSSATSPSLTEARKKILEKRHTLACNKSDMSLDQVTEPVAVPFNWERIPGRCKSNKGGSEPQLP KNPSTTQIPKLPPGKSINSTKQPLEKESKVANKFSSSNKSKSFSSSMVNIDADRERKAERNVERTRFNDVNEEEEEDVYS DALQTLSPTESYSMNCSVSGVSGLDTLDANAKKFGNFSTDQQTRDFMMNRFLPAAKAMTLQPPQYSSKKQSVLVEQQPRD VNKLVREAKKPLPNQYSTDIVPYTSHCQEELKESEDDDDDYDNPVSFSSKGCGMLPNLHIRNSLCLLNPVAGMKMKNQVP LSSTNEVGKPNKSSHIRSFSPIPAVKKAWDAIHKNKSGSGAASPDMLEDRRKWSSESNRFYSGELQPGRLSPFRRSRAAA AGLSPCRSRPQSPFRGRDSKETENSKSGMLRFHTTGLGSNQGMLSQGGAKRMSYSGNLAIEKTLYIDTTNTVKLSSSNLS SVDNKRRIDTVIADLDKRRGKESSSTIESSQGRKHVQALEEKNTLDAKVLSSMDANSSTLPSMSHLIVKEDKEKGLTTDQ DVNHELEFLKLVQGALAEDSKTNTKQIVLANGSGKGGAESPLPPPLPKSPSESWLWRALPTVSVKNSFLRSNKSSESRAE RHDSNSTSSNIKWETIVKTSKLNHDHVRYSQELTMHKLQHSKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 484 | 484 | 3.4E-85 | ||
| PANTHER | 1 | 681 | 681 | 1.5E-229 | – | |
| PANTHER | 1 | 681 | 681 | 1.5E-229 | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 12 | 26 | 15 | - | – | |
| MobiDBLite | 64 | 143 | 80 | - | – | |
| MobiDBLite | 75 | 129 | 55 | - | – | |
| MobiDBLite | 384 | 444 | 61 | - | – | |
| MobiDBLite | 413 | 427 | 15 | - | – | |
| MobiDBLite | 428 | 444 | 17 | - | – | |
| MobiDBLite | 591 | 611 | 21 | - | – | |
| MobiDBLite | 630 | 653 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0322300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…