Transcript — View — Lotus Base

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LotjaGi6g1v0326900.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0326900
Transcript ID	LotjaGi6g1v0326900.1
Lotus japonicus genome version	Gifu v1.2
Description	28 kDa heat-and acid-stable phosphoprotein-like protein; TAIR: AT5G46020.1 28 kDa heat/acid-stable phosphoprotein-like protein; Swiss-Prot: sp\|Q13442\|HAP28_HUMAN 28 kDa heat- and acid-stable phosphoprotein; TrEMBL-Plants: tr\|I3SKD2\|I3SKD2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0326900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:64203671..64207132) extracted from Lotus japonicus Gifu genome v1.2.

ATAAAGTGAAAGCGCATCCACTTACGTTGTTATCAAAAAAACGCACGCCAAATTCAATCTGCGAATTTTGCTTTGCATAT AACAAAGCAACACAATTCGATTCGCAAGTAGCGTTGCTGCAAATTGAATTGAATCGAATTCTTCACGATGGGAAGAGGAA AATTCAAGGCCAAGCCCACCGGTCGCCGCCAGTTTTCCACCCCGGAGGACATGCGTAAGCCCTTCTTTTCATCACCCCCA ATTTCTGCATGCTCTCTTTCATTCCATTTCATCTCCTTAATGCTAAATCCTATCACGTTGTTGATTGTGAAATTGGATTC TGTGTTTCATGTGAAAAATGAAATTAGATCTGCCATTTCAGTAACTGAGTTCAAGTTACTGTGTTTCTTGTGGAATTAGT TGAAATAGGCATGAGTTATTAGGAGTTTATGGACTATAACTTCAAAGATATATTATATATCTGTTCGTGTTTGTGGGTTT ACAATCTGTTTGGATTGGATGCAAACTATAAAGCACTTATTGAAGCTTATCTAGTGAGTTTTCTTTCTACTAGATAAGCT TCAACGAGTGCGTAGACGAACGGGCTCTTAGTAGAGAATCTAGAGATAAGAAAAGGTTGGAGAACTTGAAAACAATTTGT TGATACAATTAATTTGTAGAGTTGTTAACCATTTTAAAAGCAGACTGTTGTATTGGCTTGGGTTGTTGATGGGGAACAAA TAAATCAGATAGGGACTCGAAGCCAATTATTTTAATCAGTTCTAGAAAGTGGTTGTAGATCCTACAGTTGCCAAAGGAAA ATGTGTGGAGGAACTTTATAATATCTGTATTTGTTCATTCCGGTGATTACTTTTAAAAGATTGTTTCAGCTCTCTAGACG CTGGGGTGGTATTGGACAATCAAATATTTGTTATTGTGTTCTGACTTTTACGTATAGGTCTCGTCTAGTATCAAAATACT ATGTGGAGGGATTTGGTACATTATTATTGATTCTGTCACTTAGCAGCTGTAAAAGTTCTTATTAATGCCCAAACCCTTTT TGCCCCCTTCCCTCTGAAGAAAAGAAATAGAAAATGTCATTTTGTAATTGTAAAAGGATAAGAACAAAGAAAACACCTCT GAAAACTTCATGTTTCTTTTGACTATTGCAGTTGCTGGAACCTCTAACCGTCCTAAATCGTTTAGACAGGTTTTTTTCTG CCTCCTTTTCTCTTCCTACTTTTGCTCTTCTCTCTTCAAGTGATCACTTACACACAGGATACTTTTGTTTATATTGTCTA CGGTAACGGTTTAATTTTTTTGTGCTTGGCATGTGTTAATTTACATTGTCATCCTCTTTACGACCTTATTAGAAAGAAGC TGAGCACGAGGAGGAAGACCCTGAGCAAGTATCTGAGGATGAATCTGAAGAAGAATCTGAAGAGGAAACTAAAGTTAGTA TCTCAAAATCATGACTAATATAAATGGAGTTGAAGTTCTTCTCTCTTCAGTAGTTCATTTCGATATTTTTGTCTTTATGG TCTACCCTCATCAATATGATATTGACTGCCTTGTTGCCATATAATGTATGCAGAAGAATAAAGGTACCCAAGGGATTATT GAGATTGAAAATCCTAACTTGGTCAAGCCTAAGAACGTGAAAGCTAGAGATGTTGATGTGAGTTCAGCTTTTCATTATTG GTCCTTACACACATCTTCATAGCAGGTTTGAAGAATAACTCTTTTTTTTTGTGTTGATGCAGATTGAAAAAACAACTGAA CTTTCAAGGCGTGAAAGGTTTGCTGCCTTTCTTTTTGTTTTTGTCTAGGCATGCACTTAAAAATGATGTTACTTCTTTTA AAGGGAGCTGAACTTTCTTTTTCATCTACTTCCTTTAGGCTTTAGTTACATTGGGTAGATATTTAAATTGTAACTTTGTA TCAACATGTTTTCTGAAATCTGAATATCTCTGAATTTTCCCACCTTTCCGCAGAGAGGAGATAGAAAAACAGAGAGCTCA TGAGCGCTATATGAGGCTGCAAGAGCAAGGAAAAACAGAACAAGCCAGAAAAGACTTAGGTACCAGTTGCTTCTGAGATT GTGCTTTTTCTTTTTCTCCCTTAAGCCATTTGATATTATTCCACTTGTAACTATTGATTGATTGGTACTATGCATAAGCA GTTTGGGTTAAGCACAATAAAGTATGCTCTGCACGAAGAAGCACTACTTTGATTATTAATGTTTAATTTCTGTATCATGC AGACCGTTTAGCTCTTATCCGCCAGCAAAGGGCAGAAGCTGCTAAAAAGCGAGAAGAGGAGAAAGCTGGTAAGCTCTAAA TACTGTTTGTTCTACTTACTTTATTCTGATGTCCAAAAGTTTGGAACTGATGATTAAATCTATTTCAGCCAAAGAGCAGA AGAAGTCTGAAGCACGCAAGTGAATTTCGTGTGACCTAGCTTCATTCTAGTTGATAGGGAGGAATATATGCTCTCACTAC ACTTCAACATTGTGTCCATTTAGCTTTATAATGGATCTTAACAGGTGTTTACATTCCAACTTGGTAATATGCTAGTATGT AATGCAATTATTCGCACCCCGTGTTATGTTGCTTGAAATTTTAATTATATAAACTCTTTACTTCACATTAAGCGAAGGGA AACAATTTTGCGCTCTCTCTCCCCCTTCGTTAATATCCGGCTTCATGGCCAACTTTTGTTGCTAGGGTGGTGCCTTTAGC AAATGCAACGAGAGCAGATTGTGAAGGTATCATATGAGTGATGTTTGGATGATGGTTTATGAAACGTCATTTTGAATGAA CTTTAATTTTATGAAGTTTTTGTTACAGGTGCTTTGAAATAACTTGATTTATGTTTTATTTTTTCCACTTGGAAGATAAA AGTTAGATAAAAAAATTCTACTTGAATCACGTTTTAACTTTTGATTCCAAACTGTAATTTGATATAGTTTTTGTTAGATC ATAAAATAACGAGATTCACGTTTTCTTACCTTCTTGAGTAACCTCTCTAACTTAAGTTGTACGCTAGACTTTTATTATTC ATCATGGCATAGTACAAGTCTTTGCAAAAGAAGATTACTTATTTGCTTGAATTTTTGGTAGATTATGTTGGCAGTGTTGT TGACTTAAGTGCACTTGGATAATGTTTGAGACTCCCTTCTTTATCACACACTATTTTTAAGAATTCGTCAAATTATGATA AGTTTGAACAACTTGACCATGTGTTCCTTGGTCTAAATTTGATATTTGGATTTATCATTTCATAGTCTCATCTTTTTGTT AATTGATGTACACTACTACTATAGTTGTGTTTTGAATAGTTCTTTGGGTTAAAATATATAACAGTCCCTGAACTTTGAAC GAAATCTGAAAACCGTCCCTCGTCGGAAAACTATCTGAAATCCGTCCTCGTACTATCAAAAACAAATTTGACCCATCCCT CCGGCCGCCTTAGCTCCGGCAA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0326900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAGAGGAAAATTCAAGGCCAAGCCCACCGGTCGCCGCCAGTTTTCCACCCCGGAGGACATGCTTGCTGGAACCTC TAACCGTCCTAAATCGTTTAGACAGAAAGAAGCTGAGCACGAGGAGGAAGACCCTGAGCAAGTATCTGAGGATGAATCTG AAGAAGAATCTGAAGAGGAAACTAAAAAGAATAAAGGTACCCAAGGGATTATTGAGATTGAAAATCCTAACTTGGTCAAG CCTAAGAACGTGAAAGCTAGAGATGTTGATATTGAAAAAACAACTGAACTTTCAAGGCGTGAAAGAGAGGAGATAGAAAA ACAGAGAGCTCATGAGCGCTATATGAGGCTGCAAGAGCAAGGAAAAACAGAACAAGCCAGAAAAGACTTAGACCGTTTAG CTCTTATCCGCCAGCAAAGGGCAGAAGCTGCTAAAAAGCGAGAAGAGGAGAAAGCTGCCAAAGAGCAGAAGAAGTCTGAA GCACGCAAGTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0326900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRGKFKAKPTGRRQFSTPEDMLAGTSNRPKSFRQKEAEHEEEDPEQVSEDESEEESEEETKKNKGTQGIIEIENPNLVK PKNVKARDVDIEKTTELSRREREEIEKQRAHERYMRLQEQGKTEQARKDLDRLALIRQQRAEAAKKREEEKAAKEQKKSE ARK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	86	86	-	–
PANTHER	PTHR22055:SF7 View details on PTHR22055:SF7 Search for proteins/transripts with this domain View external data on PTHR22055:SF7	1	163	163	6.4E-83	–
PANTHER	PTHR22055 View details on PTHR22055 Search for proteins/transripts with this domain View external data on PTHR22055	1	163	163	6.4E-83	IPR039876 Show description in modal box View details on IPR039876 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	43	57	15	-	–
Pfam	PF10252 View details on PF10252 Search for proteins/transripts with this domain View external data on PF10252	75	152	78	2.2E-27	IPR019380 Show description in modal box View details on IPR019380 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	100	120	21	-	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	133	163	31	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	138	163	26	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0326900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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