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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0329100 |
| Transcript ID | LotjaGi6g1v0329100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleic acid-binding, OB-fold-like protein; TAIR: AT2G33845.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440; TrEMBL-Plants: tr|I3SCF8|I3SCF8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0329100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64388825..64391308) extracted from Lotus japonicus Gifu genome v1.2.
GGTAGATTCTCATAATTGTAAAGTTATAAGATTGAATTCTAAAAAAGTAGATGAAAGAGATCAGTTGTGTTTGATTTTCA GCTTAAAAGTCCGACATTAAAATTTAGTATCGCACATTGCAATGTCTCAAATTTGAAGGAGATTTTAAACCTCCATTAGG TGAAAACACCTACAATGTAAAAATCAAACAGACACGTCGTTACGATATAACACAAGACAGAAAAATAACAAAAAAAAATT ACTATACCATATTACTAGAGAGAGAGAGAGGTGTGTTTGTTCATTGTTGATCGATTGGGGATCTGATAACCAATGGCATC GAATGTGGAAGAAGGGAACACTAACAAACCGGCGAAGAGAAAGCCTGTGTTCACCAAAGTGGATCAGCTCAAACCAGGAA CCAACGGTCACACTTTGGTCGCTAAGGTCTTGTCCTCCGACACCGTCCTTCACAAAGGAGCAGGAGGAGGAGGGTCTTCT TCTTCTTCCCAAAACATTCGTCCCACCGTCATCGCCGAGTGCCTCATCGGTGATGACACCGCCACCGTCATCTTCACCGC TCGCAACGAACAAGGTCCTACTTCAACCACCTCCTTTTTGAATAATATTTAGCTATTTTCGATTAAGATTGTGATGATGG TAAATGGGGAGTGGTAAACACTTTACACATGTTTCTGTTTTATGTGTTTAGTTATTCAGATTGTTTGCTTTGAAGGGGAC ATGAATGAGATTAGGCTTTCTTATTTTATACTCTAAATCAATAAGGCTTGTTTTTTACCCATTTAATTATTGGTACCTGC ATCTAACTTTCTATTGAGATCTGTACAGTTATTTTTTGAAATCTAATGTTCATGCATGGGATTCCATAGCCATTATTGTC TTTCATCAGCTTTAATTTCTACTATGTCATTAGTTTTTGTTTCTTTGAAACACCAGGACATTTTTCAGTTTATCTACAGT GATATTGAACAGCATTTTAGTTTTGTCCTTTTGCAGATCCATATGTTGGATATGCTTACACCTGTTCACTATCTGTTAGG AAGACCCGCTTAGAATTCTAGAGAAAATTCTGAACTCAGACTCTTTGTATTTTAGTGAACATGATATTTACAAAGACCAT TGGATTATGAATATGTGATGCTCACGGACAAGATTTTTATGTTACATGACTTCATTCAATTTCCCTTCTTGAATAAGTGA AACCTCTAGCAATTAGTTTATTTGATTTGCAGAGCTCATACTCCACATGTATAGTTTCTGGTGATTTCTTCTAGTGAAAG TCATCTTGGATATGTTTCTATTGGTTGGTAATATGGTTTAACATAGGCAGATAACTGAAGGAACTTGTTTTATGTTCTGT TTATGTGATGAGGTTTATTTTACTTTATCTATGCAGTTGAGTTGATGAAGCCTGGAACTACAGTAATTATTCGTAATGCA AAGATTGACATGTTTAAGGGATCAATAAGGCTTGCTGTTGACAAATGGGGGCGCATTGAAGTCACTGAACCTGCAAATTT CGTAGTTAAAGAGGATACCAACTTATCTCAGGTCGAATATGAATTGGTGAACGTGGTTGAAGAATAATTTTATGTGGAAG TACTTTGGTAACTAGCTAGCTGTTAAGGCACAACTTAACTGGTCATATGGATGGGGTGGTATAGATTCTCACTTTAAGTA GCTAGCCAGTATTACTCTTTTAACATGCTTGACATCATTTTGGTTACAAGTAGCAGGGTTATTATGTCAAGTGTTCAATA TTAGAATGGATGTAAAACTATCTGTTTGATAACGTGGGGGAATAAACGTACTTACCTATTGAGTATTGATTAAGGTACTC AGACTCTAGCAAAACCCGAGGACTCGAACAGGCAAAAGTACTATTTGGATTCATCACTTTCAAAAATCTCTAAAGTCACT GCAGTTATTGCTTCATAGTTGTCCGACGACTTTTAAGCTGTGACTGTGGAGACTTTAAAAAATTGTTTATGGAAAATTTG GATATGTTCGCCGGATGTATACTGCTGCATCCTGCTTAATCTTGTCTGTCAATTTGGGTGCGTATAATGGACACCAGTCA ACTTGGTGGTGTATCCATACACTACAAAAATTAACCACAGGATATAGTATTAAAAAAATTAACGGTAGAGATTGATGAAA GATAGTTGATTACAATTACATTCATACCCTCTAATGGGTTCTGACTTCTGAGATTGTATATTGATCTGGCTTATGCTGTT TTGCTCCCCTGTTTTGCGTGGGTTACTGCTACTGCAACTGCAAGTTCTGCATAATAGGGAATAGCTTGATAGAAGAGGAG GTTTCCAAACGCTGACTCTTGACTAGAATTAATTGGGTGCCTTTCTCAGAGGACATCTTTCCTTTTGCGTGGGTTACTGA CTAGGAATTAATTGTTGTAATGTGGTCCAAGACCTTTATTGAAACATATTATTAATTGATTTTTCAAAAAAAATGGTTGG GAAG
CDS sequence (LotjaGi6g1v0329100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCGAATGTGGAAGAAGGGAACACTAACAAACCGGCGAAGAGAAAGCCTGTGTTCACCAAAGTGGATCAGCTCAA ACCAGGAACCAACGGTCACACTTTGGTCGCTAAGGTCTTGTCCTCCGACACCGTCCTTCACAAAGGAGCAGGAGGAGGAG GGTCTTCTTCTTCTTCCCAAAACATTCGTCCCACCGTCATCGCCGAGTGCCTCATCGGTGATGACACCGCCACCGTCATC TTCACCGCTCGCAACGAACAAGTTGAGTTGATGAAGCCTGGAACTACAGTAATTATTCGTAATGCAAAGATTGACATGTT TAAGGGATCAATAAGGCTTGCTGTTGACAAATGGGGGCGCATTGAAGTCACTGAACCTGCAAATTTCGTAGTTAAAGAGG ATACCAACTTATCTCAGGTCGAATATGAATTGGTGAACGTGGTTGAAGAATAA
Protein sequence (LotjaGi6g1v0329100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNVEEGNTNKPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLHKGAGGGGSSSSSQNIRPTVIAECLIGDDTATVI FTARNEQVELMKPGTTVIIRNAKIDMFKGSIRLAVDKWGRIEVTEPANFVVKEDTNLSQVEYELVNVVEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 5 | 150 | 146 | 8.2E-78 | – | |
| PANTHER | 5 | 150 | 146 | 8.2E-78 | – | |
| SUPERFAMILY | 14 | 147 | 134 | 8.23E-37 | ||
| Gene3D | 30 | 139 | 110 | 2.1E-34 | – | |
| CDD | 63 | 123 | 61 | 1.8135E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0329100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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