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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0330800 |
| Transcript ID | LotjaGi6g1v0330800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit D; TAIR: AT4G20980.1 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); Swiss-Prot: sp|P56820|EIF3D_ARATH Eukaryotic translation initiation factor 3 subunit D; TrEMBL-Plants: tr|V7BQA6|V7BQA6_PHAVU Eukaryotic translation initiation factor 3 subunit D; Found in the gene: LotjaGi6g1v0330800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64599438..64601132) extracted from Lotus japonicus Gifu genome v1.2.
GCAACAATGGGAGAAGCATTCGAAGTCGGCGCAGTTCCTTTCAACGCCGACGGTTGGGGGCCATTGGACAACGCAGCCGC CAACACCAACCTCCCTCTCAACGTCCCCTTCGCCCCCTTCTCCCGCTCCGACAAGCTCGGCCGTATCGCCGATTGGACCC GCAACTTCAACAACCCGACCCGCTCCAAGAACCCAGCCGACTCGGCATTCGACTTCTCCCTCGACGAATCCTTCCCCGCT TCCGCCGATGACGACGCCTCCTTCCGCCTCGTCGACGGCAAACCCCCTCCGCGTCCCAGGTTCGGTCCCAAGTGGCGCTT CCAGCAGCAGCGTCAACTCCCTCAGCGTCGCGATGAGGAGGTTGAAGCCAAGAAGCGTGAGGCCGAGAAGGAACGTGCCC GCCGCGATCGCCTGTACCACCTGAACCGTTCAAACCCTAACGCCCCTCGCCGTGAAGCTGCGGTGTTCAAATCGTCGGTG GATATTCAGCCAGAGTGGAACATGCATGATCAGATCCCATTCTCCACGTTCTCCAAGCTCTCCTTCACCGTCCCTGAACC CGAAGATCTTCTCCTCTGTGGTGCTCTCGAGTACTACGATCGCGCATACGATCGAATCACCCCGAAGAACGAGCGCCGGC TTGAGAGGTTCAAGAATCGCAACTTCTTCAAGGTTACCACCACTGATGACCCTGTTATTCGGAGGCTCGCGAATGAGGAT AAAGCGACTGTGTTTGCCACTGACACCATTCTCTCCACGCTCATGTGTGCACCCAGGTCTGTTTACTCTTGGGATATCGT TGTTGAGCGTGTTGGGAATAAGCTTTTCTTTGATAAGAGAGATGGGTCGCAGTTGGATTTGCTTTCTGTTCATGAGACAT CGCAGGAGCCTTTGCCTGAGGCTAAGGATGATATTAACTCGGCTCATTCGTTGAGCGTTGAGGCCGCGTATATCAATCAG AATTTCTCCCAGCAAGTGTTGATTAGGGATGGGAACAAGGTTACTTTTGATGAGGCGAATCCTTTTGCTAATGAGGGTGA GGAGGTTGCTTCTGTGGCTTATAGGTATAGGAGGTGGAAGCTTGATGATGATATGTATCTGGTTGCTAGGTGTGAGGTGC AGAGTGTTGTTGATGTGAACAAGCAGAGGTCGTTCCTAACATTGAATGCGTTGAATGAGTTTGATCCTAAGTATTCCGGT GTTGATTGGAGGCAGAAGTTGGAGACGCAGAGAGGTGCTGTGTTGGCTACTGAGCTCAAGAACAATGCAAATAAGTTGGC TAAATGGACTGCCCAAGCTCTGCTTGGAAGTGCGGATATGATGAAGTTGGGATATGTGTCTCGTATCCATCCCCGTGACC ACTTTAATCATGTGATTTTGGCTGTGGTTGGATATAAACCCAAGGACTTTGCTGCACAGATTAATTTGAACACTTCTAAT ATGTGGGGAATTGTGAAGTCTATTGTGGATTTGTGCATGAAATTGAATGAGGGGAAATATGTTCTTGTGAAGGATCCATC TAAGCCCCAGGTTAGGATTTATGAGGTTCCAGCAAATGCATTTGAAAACGACTACGTGGAGGAGCCACTTCCTGAAGATG AACAAGTTCAACCTCCAGCAGAGGGTGCTGATGGTGAAGAGGCTGCTGCTACCACCAATGATGTGGAAGATAAGCCAGTA GAAGATCAAGCTTGA
CDS sequence (LotjaGi6g1v0330800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAAGCATTCGAAGTCGGCGCAGTTCCTTTCAACGCCGACGGTTGGGGGCCATTGGACAACGCAGCCGCCAACAC CAACCTCCCTCTCAACGTCCCCTTCGCCCCCTTCTCCCGCTCCGACAAGCTCGGCCGTATCGCCGATTGGACCCGCAACT TCAACAACCCGACCCGCTCCAAGAACCCAGCCGACTCGGCATTCGACTTCTCCCTCGACGAATCCTTCCCCGCTTCCGCC GATGACGACGCCTCCTTCCGCCTCGTCGACGGCAAACCCCCTCCGCGTCCCAGGTTCGGTCCCAAGTGGCGCTTCCAGCA GCAGCGTCAACTCCCTCAGCGTCGCGATGAGGAGGTTGAAGCCAAGAAGCGTGAGGCCGAGAAGGAACGTGCCCGCCGCG ATCGCCTGTACCACCTGAACCGTTCAAACCCTAACGCCCCTCGCCGTGAAGCTGCGGTGTTCAAATCGTCGGTGGATATT CAGCCAGAGTGGAACATGCATGATCAGATCCCATTCTCCACGTTCTCCAAGCTCTCCTTCACCGTCCCTGAACCCGAAGA TCTTCTCCTCTGTGGTGCTCTCGAGTACTACGATCGCGCATACGATCGAATCACCCCGAAGAACGAGCGCCGGCTTGAGA GGTTCAAGAATCGCAACTTCTTCAAGGTTACCACCACTGATGACCCTGTTATTCGGAGGCTCGCGAATGAGGATAAAGCG ACTGTGTTTGCCACTGACACCATTCTCTCCACGCTCATGTGTGCACCCAGGTCTGTTTACTCTTGGGATATCGTTGTTGA GCGTGTTGGGAATAAGCTTTTCTTTGATAAGAGAGATGGGTCGCAGTTGGATTTGCTTTCTGTTCATGAGACATCGCAGG AGCCTTTGCCTGAGGCTAAGGATGATATTAACTCGGCTCATTCGTTGAGCGTTGAGGCCGCGTATATCAATCAGAATTTC TCCCAGCAAGTGTTGATTAGGGATGGGAACAAGGTTACTTTTGATGAGGCGAATCCTTTTGCTAATGAGGGTGAGGAGGT TGCTTCTGTGGCTTATAGGTATAGGAGGTGGAAGCTTGATGATGATATGTATCTGGTTGCTAGGTGTGAGGTGCAGAGTG TTGTTGATGTGAACAAGCAGAGGTCGTTCCTAACATTGAATGCGTTGAATGAGTTTGATCCTAAGTATTCCGGTGTTGAT TGGAGGCAGAAGTTGGAGACGCAGAGAGGTGCTGTGTTGGCTACTGAGCTCAAGAACAATGCAAATAAGTTGGCTAAATG GACTGCCCAAGCTCTGCTTGGAAGTGCGGATATGATGAAGTTGGGATATGTGTCTCGTATCCATCCCCGTGACCACTTTA ATCATGTGATTTTGGCTGTGGTTGGATATAAACCCAAGGACTTTGCTGCACAGATTAATTTGAACACTTCTAATATGTGG GGAATTGTGAAGTCTATTGTGGATTTGTGCATGAAATTGAATGAGGGGAAATATGTTCTTGTGAAGGATCCATCTAAGCC CCAGGTTAGGATTTATGAGGTTCCAGCAAATGCATTTGAAAACGACTACGTGGAGGAGCCACTTCCTGAAGATGAACAAG TTCAACCTCCAGCAGAGGGTGCTGATGGTGAAGAGGCTGCTGCTACCACCAATGATGTGGAAGATAAGCCAGTAGAAGAT CAAGCTTGA
Protein sequence (LotjaGi6g1v0330800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEAFEVGAVPFNADGWGPLDNAAANTNLPLNVPFAPFSRSDKLGRIADWTRNFNNPTRSKNPADSAFDFSLDESFPASA DDDASFRLVDGKPPPRPRFGPKWRFQQQRQLPQRRDEEVEAKKREAEKERARRDRLYHLNRSNPNAPRREAAVFKSSVDI QPEWNMHDQIPFSTFSKLSFTVPEPEDLLLCGALEYYDRAYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKA TVFATDTILSTLMCAPRSVYSWDIVVERVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAHSLSVEAAYINQNF SQQVLIRDGNKVTFDEANPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVVDVNKQRSFLTLNALNEFDPKYSGVD WRQKLETQRGAVLATELKNNANKLAKWTAQALLGSADMMKLGYVSRIHPRDHFNHVILAVVGYKPKDFAAQINLNTSNMW GIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPANAFENDYVEEPLPEDEQVQPPAEGADGEEAAATTNDVEDKPVED QA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 543 | 543 | 4.9E-228 | ||
| Hamap | 3 | 525 | 523 | 66.976 | ||
| PANTHER | 4 | 546 | 543 | 1.7E-292 | – | |
| PANTHER | 4 | 546 | 543 | 1.7E-292 | ||
| Pfam | 7 | 513 | 507 | 9.4E-197 | ||
| MobiDBLite | 83 | 132 | 50 | - | – | |
| MobiDBLite | 109 | 132 | 24 | - | – | |
| Coils | 114 | 134 | 21 | - | – | |
| MobiDBLite | 522 | 562 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. |
Expression pattern of LotjaGi6g1v0330800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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