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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0335400 |
| Transcript ID | LotjaGi6g1v0335400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyphenol oxidase; TAIR: AT1G19230.1 Riboflavin synthase-like superfamily protein; Swiss-Prot: sp|Q06215|PPO_VICFA Polyphenol oxidase A1, chloroplastic; TrEMBL-Plants: tr|A0A0B2PGN9|A0A0B2PGN9_GLYSO Polyphenol oxidase A1, chloroplastic; Found in the gene: LotjaGi6g1v0335400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64978168..64980261) extracted from Lotus japonicus Gifu genome v1.2.
CTAGCTAAAAACATGGCATCTATATCATCTTCACTTCTGTCTTCGGTATCCACTAATGTCATCAATGTCTCTTCCAACTC CAACACTTTCCATTCTTCTCTGCATCCATTATTCTCTCAAAAGAAACTCAGCAAACCAAAACGGCATCATTACCACGTAT CTACAGTAGCATGCAGCAGGGGCAACCAGGGCAACACAACACCAAACTCCAACAAAACAGAACAAACCCATAACAACATT GTAGGACACAGAAGAGATGTTCTGATTGGCCTAGGTGCTGCCACTCTTAGCAGCAGTAACAACCTTTTCGCCATTGCTGC TCCAGTGTCCCCTCCAAATCTCAAAACATGCGGTCCACCAGACCTCCCTGAAGACCTCCCTGATGGTGCAAATTCAAACC TTAATTGTTGTCCACCATCTTCCACAAACATCATCGATTTCAAGCTTCCTTCCTCTAACAGTAACACCCCCTTGCGGGTA AGACCAGCAGCAAATCTAGCGAGTGATGAGCATCTAGCCAAATACAAGAAAGCTATTGAGATCATGAAATCACTTCCTTC CAATGACCCGAGAAGCTTCATGCAACAAGCCAACATCCACTGCGCTTACTGTGACGGCGCATATCACCAAGATGGGTTCC CTGACCTCGACCTTCAAGTCCACAACTCTTGGCTCTTCTTCCCCTTCCACCGTTGGTACCTCTATTTCCACGAGAGAATC TTGGGGAGCTTGATCGATGACCCCACTTTCACCCTTCCATTTTGGAATTGGGATGCTCCAGGAGGAATGCAATTACCTTC AATTTACAATGACAGAAAATCACCTCTTTATGATTCTCTCCGGAATTCCAATCATCTCCCTCCAACACTCATAGATTTAG ACTATAATCTCACGGAAGATCCTAATGCAAGTGTTTCCACGAACCTCACTATAATGTACAGGCAACTTGTCTCTAATGGA AAGACTCCAAGACTCTTCCTTGGAGAACCTTACCGTGCTGGAGATGAATCTGACCCTGGTGCTGGCTCACTGGAGAATGT CCCACATGGCCCAGTTCATATATGGACAGGAGATAATACTCAGCCTAACCTTGAGAACATGGGGATTTTCTATGCGGCTG CAAGAGACCCCATTTTCTTCTGTCATCATTCAAACATTGATAGGTTGTGGTCTTTATGGAAAACACTCGGTGGAAAAAGA AAGGATTTCACTGACCCGGATTGGTTACAATCCGGATTTCTCTTCTACGATGAGAATAAGAACCTTGTGCGTGTCAAGGT CGAGGATTGCCTTGACACCACAAAGCTCGGGTACGTTTATCAGGATGTGGATATTCCGTGGCTAAATTCCAAGCCCACAC CGCGCAGGCCAAGGACTCAGAAAGTAGCACAGGGTTTAAATTTTGGCATTGGTGCAGCACAGGCTGCTGAGAGTACTTCA AAGAGTTATGTAACATTCCCTCTGGTTTTGGATTCTGTTGTGAGTGCCGTGGTGAAGAGACCCAAGAAGTCAAGGACCAA AGAGGAGAAGGAGGATTTGGAAGAGGTTTTGGTGATTGAAGGGATAGAGTTTGATAGGAAGACGGCAGTGAAGTTTGATG TTTTGATCAATGATGAAGATGACAAGGTGATTAGGCCAGAGAATACAGAGTTTGCGGGAAGCTTTGTGAGCGTGCCTCAT TCGCATAAACATAAGAACATGAAGATGAACACTTGTTTTAGACTTGGCTTGACAGATTTATTGGAGGATTTGGGAGCTGA AGATGATGAAAGTGTTGTGGTGACATTGGTTCCAAGGTTTGGGAATGGGCTGGTCAAAATCAGAGGCGTCAAGATAGAAC TTGAAGATTAAAAAAAAAATTCAACCACGTACATGTGTGTGTGGTGGTAATGGTTCCTTGAATTATATCTAGTGATGTGG GTGATTTTTATTTGTTCATGTGGTGGTAACAATAAATTTCCTCTTTGTTTGTTTCGAAAGAAAACATAATCAAATTGTTA GAATTATCTATAAGTCACTACAACAAAAGGCGTTTTCAGCGGCAATTAATATCGCTTTTAGCGGCAATAAAAATGGCCTC TATGACTTTTACCG
CDS sequence (LotjaGi6g1v0335400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTATATCATCTTCACTTCTGTCTTCGGTATCCACTAATGTCATCAATGTCTCTTCCAACTCCAACACTTTCCA TTCTTCTCTGCATCCATTATTCTCTCAAAAGAAACTCAGCAAACCAAAACGGCATCATTACCACGTATCTACAGTAGCAT GCAGCAGGGGCAACCAGGGCAACACAACACCAAACTCCAACAAAACAGAACAAACCCATAACAACATTGTAGGACACAGA AGAGATGTTCTGATTGGCCTAGGTGCTGCCACTCTTAGCAGCAGTAACAACCTTTTCGCCATTGCTGCTCCAGTGTCCCC TCCAAATCTCAAAACATGCGGTCCACCAGACCTCCCTGAAGACCTCCCTGATGGTGCAAATTCAAACCTTAATTGTTGTC CACCATCTTCCACAAACATCATCGATTTCAAGCTTCCTTCCTCTAACAGTAACACCCCCTTGCGGGTAAGACCAGCAGCA AATCTAGCGAGTGATGAGCATCTAGCCAAATACAAGAAAGCTATTGAGATCATGAAATCACTTCCTTCCAATGACCCGAG AAGCTTCATGCAACAAGCCAACATCCACTGCGCTTACTGTGACGGCGCATATCACCAAGATGGGTTCCCTGACCTCGACC TTCAAGTCCACAACTCTTGGCTCTTCTTCCCCTTCCACCGTTGGTACCTCTATTTCCACGAGAGAATCTTGGGGAGCTTG ATCGATGACCCCACTTTCACCCTTCCATTTTGGAATTGGGATGCTCCAGGAGGAATGCAATTACCTTCAATTTACAATGA CAGAAAATCACCTCTTTATGATTCTCTCCGGAATTCCAATCATCTCCCTCCAACACTCATAGATTTAGACTATAATCTCA CGGAAGATCCTAATGCAAGTGTTTCCACGAACCTCACTATAATGTACAGGCAACTTGTCTCTAATGGAAAGACTCCAAGA CTCTTCCTTGGAGAACCTTACCGTGCTGGAGATGAATCTGACCCTGGTGCTGGCTCACTGGAGAATGTCCCACATGGCCC AGTTCATATATGGACAGGAGATAATACTCAGCCTAACCTTGAGAACATGGGGATTTTCTATGCGGCTGCAAGAGACCCCA TTTTCTTCTGTCATCATTCAAACATTGATAGGTTGTGGTCTTTATGGAAAACACTCGGTGGAAAAAGAAAGGATTTCACT GACCCGGATTGGTTACAATCCGGATTTCTCTTCTACGATGAGAATAAGAACCTTGTGCGTGTCAAGGTCGAGGATTGCCT TGACACCACAAAGCTCGGGTACGTTTATCAGGATGTGGATATTCCGTGGCTAAATTCCAAGCCCACACCGCGCAGGCCAA GGACTCAGAAAGTAGCACAGGGTTTAAATTTTGGCATTGGTGCAGCACAGGCTGCTGAGAGTACTTCAAAGAGTTATGTA ACATTCCCTCTGGTTTTGGATTCTGTTGTGAGTGCCGTGGTGAAGAGACCCAAGAAGTCAAGGACCAAAGAGGAGAAGGA GGATTTGGAAGAGGTTTTGGTGATTGAAGGGATAGAGTTTGATAGGAAGACGGCAGTGAAGTTTGATGTTTTGATCAATG ATGAAGATGACAAGGTGATTAGGCCAGAGAATACAGAGTTTGCGGGAAGCTTTGTGAGCGTGCCTCATTCGCATAAACAT AAGAACATGAAGATGAACACTTGTTTTAGACTTGGCTTGACAGATTTATTGGAGGATTTGGGAGCTGAAGATGATGAAAG TGTTGTGGTGACATTGGTTCCAAGGTTTGGGAATGGGCTGGTCAAAATCAGAGGCGTCAAGATAGAACTTGAAGATTAA
Protein sequence (LotjaGi6g1v0335400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASISSSLLSSVSTNVINVSSNSNTFHSSLHPLFSQKKLSKPKRHHYHVSTVACSRGNQGNTTPNSNKTEQTHNNIVGHR RDVLIGLGAATLSSSNNLFAIAAPVSPPNLKTCGPPDLPEDLPDGANSNLNCCPPSSTNIIDFKLPSSNSNTPLRVRPAA NLASDEHLAKYKKAIEIMKSLPSNDPRSFMQQANIHCAYCDGAYHQDGFPDLDLQVHNSWLFFPFHRWYLYFHERILGSL IDDPTFTLPFWNWDAPGGMQLPSIYNDRKSPLYDSLRNSNHLPPTLIDLDYNLTEDPNASVSTNLTIMYRQLVSNGKTPR LFLGEPYRAGDESDPGAGSLENVPHGPVHIWTGDNTQPNLENMGIFYAAARDPIFFCHHSNIDRLWSLWKTLGGKRKDFT DPDWLQSGFLFYDENKNLVRVKVEDCLDTTKLGYVYQDVDIPWLNSKPTPRRPRTQKVAQGLNFGIGAAQAAESTSKSYV TFPLVLDSVVSAVVKRPKKSRTKEEKEDLEEVLVIEGIEFDRKTAVKFDVLINDEDDKVIRPENTEFAGSFVSVPHSHKH KNMKMNTCFRLGLTDLLEDLGAEDDESVVVTLVPRFGNGLVKIRGVKIELED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PIRSF | 1 | 612 | 612 | 9.6E-267 | ||
| PANTHER | 35 | 610 | 576 | 2.4E-252 | – | |
| PANTHER | 35 | 610 | 576 | 2.4E-252 | – | |
| MobiDBLite | 38 | 72 | 35 | - | – | |
| MobiDBLite | 52 | 72 | 21 | - | – | |
| Gene3D | 103 | 445 | 343 | 2.6E-121 | ||
| SUPERFAMILY | 126 | 444 | 319 | 6.65E-103 | ||
| Pfam | 186 | 391 | 206 | 9.6E-34 | ||
| ProSitePatterns | 217 | 234 | 18 | - | ||
| PRINTS | 217 | 234 | 18 | 3.0E-19 | ||
| PRINTS | 248 | 253 | 6 | 3.0E-19 | ||
| PRINTS | 344 | 355 | 12 | 3.0E-19 | ||
| PRINTS | 371 | 389 | 19 | 3.0E-19 | ||
| ProSitePatterns | 372 | 383 | 12 | - | ||
| Pfam | 398 | 449 | 52 | 4.1E-28 | ||
| Pfam | 482 | 610 | 129 | 5.0E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catechol oxidase activity | Catalysis of the reaction: 2 catechol + O2 = 2 1,2-benzoquinone + 2 H2O. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Pigment biosynthetic process | The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0335400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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