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LotjaGi6g1v0338600.2

Overview

Field Value
Gene ID LotjaGi6g1v0338600
Transcript ID LotjaGi6g1v0338600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Sphingosine kinase, putative; TAIR: AT4G21540.1 sphingosine kinase 1; Swiss-Prot: sp|Q8L7L1|SPHK1_ARATH Sphingosine kinase 1; TrEMBL-Plants: tr|A0A072V3V9|A0A072V3V9_MEDTR D-erythro-sphingosine kinase/diacylglycerol kinase; Found in the gene: LotjaGi6g1v0338600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:65289948..65292722) extracted from Lotus japonicus Gifu genome v1.2.

ATGCCCCTTGGAATAGTTCCTGCAGGTTTGTTACTTTTTTTTATTGATTTGGATTTATCTAATTAGACTTCATTACTTTA AATCATTTACTGAGCAAGGGCATGAAACCATTGTCTAATAATGGTTGTTTACCAGGAGTGGTAAGATGGGGCTAATACTA TTGGCTGGGTTTTATGTACAAAGTTTTTCATTTGTTTATCAGTAGATAAGTTTATGGGTAACTATACAAGTTTAGTTATA CCAAGCTAATAAGTTCGCCATTGCTTTGAAGGTACGGGAAATGGCATGGCAAAATCTCTTCTTGATTCAGTTGGTGATCC GTGTGCAATAGCCAATGCTGTTCTTGCCATTATACGAGGTTTCAATCCATTTATGTCATTCAAACATGCCATATCCTGTT TTTTTTTACCCTTTTTCTGTGTTGTTAAGTATAGTCTGTATTTTAAATACTAACAGGTCATAAACGACTGCTTGATGTGG CTACCATCACACAAGGGGAAACCAGATTTTTCAGTATATTGATGCTTGCATGGGGTAATTACTCTCACCATATATTGCAT TATGCCAACTAGGTGGTGGCGGATGTTCTAAAAACCTGAAACATCTAGGCTATTGGTTTCTTACTTTTTTCTTTTTTGTT TATTTGTCCCAGACTCGGAGCTACATATGGTTCTGAGTTCTGATGATGCATTCACTCTTACATAAATATTATATGATATC ATTGAGGCTATTATTCTATTTCAGGTCTCATTGCAGATATTGACATTGAATCTGAAAAATATCGGTGGATGGGAAGTGCT CGTCTAGATTTTTATGTTAGTAAGCCCTTTTATAATGTTGACCACACATTTTATTTTTATGCTTTTCTCTTACTAATATG TGCGTCTGTTAAATGGATTAGTGTTAGAATATCATGTTAACACTTGGATTGAAGGCAAAAATATAAACCGGAAAAACATT TAATCATTGAATTGCAATTTGCAAGTTATCTATTTTATTCGTGGGCATTTTTACAATATGACTTTCTGTAGAATGCTTTC AAGTACGTAGTTTACAAAATACACTTTTGATTTCTAGCACTAGAATCAGATATAAACTAATAGCAAAACGCACTCGATGA ACCAATCTAGTCCACTGGTAATTCTTTCTCCCCTCTCTTTGTTTTTCTCAGTTTCCTGAAAGTTTCTGTCTACTTGGATT TTTTTAGGGTCCATTTTTTCTGTGTATGACTCTGAGGAAAGTTCCAAATATAAAGAGAAAGAGAAATGCATCACGGCTAA GGACACTTGCCTTTGTTTTTAGGAGAAGATTTCTTACTTAAAGTTAAATTTCTATTTCGTGTAGTTCTGTTTTGAAGGGT GATCCTGACCTCTATATGTTATTGTAACATAAATGGCCTTTTAGTGGGGAACTTGATTCTAAGATGTAACATAAACTTGT ATTGCAAATTTGCAATTGCCAATTAGTATAATTGCTAAGTGCAAGACGTTAATCATCAATATTTGTTTTTTCACCGCTTT CCTGCTGTAGGGTCTCTGTCGATTATTGAATCTGAGGCAATACAATGGATGTGTTTCTTTCGTGCCTGCACCTGGGTTTG AGGATTATGGGGAGCCGACTACTTACCCTGGAAAACCTACCAGCAAAGGTGACAGCAGTGATCCCAGTGAAGCGGAGCAC GTTAATTTGCAAAGACTTTGTTATACTTATCAAGGACCTGAAATAAACTTGGAAAATCTGAATTGGAGAGTTATAAATGG ACCCTTTGTTTCTGTCTGGCTTCACAATGTACCTTGGGGTGCAGAAGACACAATGGCAGCACCTGATGCAAAGGTCAGTT TTTGTGATTAAAGAATTTGATATTAAGCATATAATGTCACTCACACTCCCCTGTATTTTGATAGTGCATCAGAGTTAAGT TGATGAAATGTGTATTACTCAACACAAATAACATGCAATACAGCCATTTGCTGTCCCAAATACAAAAGTCTCCTGCTGAG AACTCTCTTTCCATAATTTACAAATAACAACTTATAATTACCCACCCTAAATCAAATATATTCCTAAAACAGCACTATGA TCAGTAGTTTTCGACAAACAACTGCCATTAAGTAGTTTCCTATGATCAAATATACTCCTAAAACAGAACTGTTGAACTGC CAGTGATCAAAATATTCACTCTCCTAAGTTTCTCCCTAGTGAAGGACTATCTATTAGAGAGACAGACAGACACACAAACA CATATATAAGCATTGTCACTTAATATGATTGGTGTTGTTTACTTTATGAAGCTGAGCCTGACACTTCTTTTGTCATTGTA ATTTGGTAAGTACAGTTTTCTGATGGTTATCTGGACTTGATCATTACGAAGAATTGCCCTAAGTTACAATTGCTGTCAAT GATGTCAGAGTTGAATAAGGGAGGACATGTAAAATCCCCATATGTCACATACCTAAAGGTGTGATCACCGATATCTCTTT TTTAGCAGTTACATTGAACTTTGGAAGTTTCTCTGCATTGGCATATATTTGCTTAACAAAATTTGCTAATCTACGTTTTT ATGTATCTTGCCACCAATTGCAGGTGAAGGCTTTCAGCTTGGAACCTGGTCCACGCACCAAGGACAAAGAAAAGGAGGGG ATTATAGATTCAGATGGTGAGGTACTGGCAAGGGGCAAAGGAACTTACAAGTGTGAGCAGAAGTCTTTGATGGCCTATGA TAAATTGCAGATAACAGTAGATAAAGGTTTAGCCACACTTTTTACCCCTATATAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0338600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCCCTTGGAATAGTTCCTGCAGGTACGGGAAATGGCATGGCAAAATCTCTTCTTGATTCAGTTGGTGATCCGTGTGC AATAGCCAATGCTGTTCTTGCCATTATACGAGGTCATAAACGACTGCTTGATGTGGCTACCATCACACAAGGGGAAACCA GATTTTTCAGTATATTGATGCTTGCATGGGGTCTCATTGCAGATATTGACATTGAATCTGAAAAATATCGGTGGATGGGA AGTGCTCGTCTAGATTTTTATGGTCTCTGTCGATTATTGAATCTGAGGCAATACAATGGATGTGTTTCTTTCGTGCCTGC ACCTGGGTTTGAGGATTATGGGGAGCCGACTACTTACCCTGGAAAACCTACCAGCAAAGGTGACAGCAGTGATCCCAGTG AAGCGGAGCACGTTAATTTGCAAAGACTTTGTTATACTTATCAAGGACCTGAAATAAACTTGGAAAATCTGAATTGGAGA GTTATAAATGGACCCTTTGTTTCTGTCTGGCTTCACAATGTACCTTGGGGTGCAGAAGACACAATGGCAGCACCTGATGC AAAGTTTTCTGATGGTTATCTGGACTTGATCATTACGAAGAATTGCCCTAAGTTACAATTGCTGTCAATGATGTCAGAGT TGAATAAGGGAGGACATGTAAAATCCCCATATGTCACATACCTAAAGGTGAAGGCTTTCAGCTTGGAACCTGGTCCACGC ACCAAGGACAAAGAAAAGGAGGGGATTATAGATTCAGATGGTGAGGTACTGGCAAGGGGCAAAGGAACTTACAAGTGTGA GCAGAAGTCTTTGATGGCCTATGATAAATTGCAGATAACAGTAGATAAAGGTTTAGCCACACTTTTTACCCCTATATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0338600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPLGIVPAGTGNGMAKSLLDSVGDPCAIANAVLAIIRGHKRLLDVATITQGETRFFSILMLAWGLIADIDIESEKYRWMG SARLDFYGLCRLLNLRQYNGCVSFVPAPGFEDYGEPTTYPGKPTSKGDSSDPSEAEHVNLQRLCYTYQGPEINLENLNWR VINGPFVSVWLHNVPWGAEDTMAAPDAKFSDGYLDLIITKNCPKLQLLSMMSELNKGGHVKSPYVTYLKVKAFSLEPGPR TKDKEKEGIIDSDGEVLARGKGTYKCEQKSLMAYDKLQITVDKGLATLFTPI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12358
1 290 290 3.2E-123 –
PANTHER
PTHR12358:SF83
1 290 290 3.2E-123 –
ProSiteProfiles
PS50146
1 52 52 15.495
IPR001206
Pfam
PF00781
1 48 48 1.5E-5
IPR001206
Gene3D
G3DSA:3.40.50.10330
1 49 49 1.1E-5
IPR017438
SUPERFAMILY
SSF111331
2 272 271 1.22E-39
IPR016064
Gene3D
G3DSA:2.60.200.40
50 272 223 1.8E-59 –
MobiDBLite
mobidb-lite
115 134 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003951
Molecular function NAD+ kinase activity Catalysis of the reaction: ATP + NAD(+) = ADP + 2 H(+) + NADP(+).
Subterm of
GO:0016301
Molecular function Kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0338600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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