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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0338800 |
| Transcript ID | LotjaGi6g1v0338800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G61330.1 FBD, F-box and Leucine Rich Repeat domains containing protein; Swiss-Prot: sp|O64787|FBD4_ARATH Putative FBD-associated F-box protein At1g61330; TrEMBL-Plants: tr|K7M1Q1|K7M1Q1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0338800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65309792..65313196) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATACTAATTATCTATGTTGAATACACTTAGTAGTATTAATTTTAAAACTTCTAATACATACCTTGACCCAGGATTC CTGGTAGGAACACAAACCCCACGTCACTTGTTCTTTGCATTCAGTGAAGAGAGTGAATATGAGAGATAAAGTTATTTCCT CAGTATTCTGCAAATTAATGCAAAAAAAGCCAGTGATGTCAGAAACTGAAAACCAGTATCCTTGACCAATCCCAATTGCA TCAAACAATACAATTCATAAATGCACGTTATTGTTCTTTTGCTATATAAATCCAATGCCTCTACACTATTTCCTCAGGTT CTTCCGATCACTCCACTCTTCCTGTGATTTTCTGATTCTTGTTCTTCATCATCATCAGCATTTTCTCCACCACCACCACC ATCCATGGCCACCAACAACCCATCATCATCATCATTTTGTCCACCGCCACCATCCATGGCCACCACCAACCCTGAAAAAT CCTCTCCCCCAGCAAAGAAAGCCAGGAAGGAAGGAGAATCATTTGAACTTCCTCCTCTAACTCATTATCTCCCAGAGGAT ATCCTTGAGATTGCAATGACCCTTTTACCCTTGAAAGAAGCAGCTAGGTTTAGCACTGTGGCTACCAGGTTCAGCAGAAC CTGGTGCTTCAACAGAAAATTCATCTTTGGTAGAGAACTCTCTCTCAGGAATGACCAACAAGCCCACACCACGCTTGTTG ATCGCATGTTCGAGTCTCACCAGGGAAATGAGATCCAGTGCTTTCAGGTGCACGTGGATCCCATCGGTGTCGAACAACTG ATCATGAAATGGCTGAGAATCTGCGGTGAGAAGAAAACAGAGGACGTGTTGCTGAATTTCCTAAGACGGGGGTTCCGTCT AAGCCCCGATGACATCGACTGCCTTAGTGAAAGTCTTAAATCTCTGAATCTGGTTCGCTGCGGAATCATGATGCCACCCG TCACAAGGAGCATGCAGTTCCTGCACACCGTGATTTTGAAGCAGGTTGAATTGGTATCAGATCAGCTTGAGAGTCTGGTT TGGCATTGCAGGGCGCTTGTGAATTTGGAACTATTTCAATGTCGTGGGCTTCAGAGTGTGAGGATCTATGCCAGGGCGCA TCGGCATTTGAGGACGGTGAAGGTTTCTGGGTGTGCTGGTGTGAATTGGATGATGATTGATGCCCCTACAATTAAGTGTT TTTTCTTCGCTGGTGTTCGACCAACAATCTTATTTGGTGATTTTGGCGAAGTGTACTTGCAAGAAGCCATCTTCAACTTT GTGCCTGCCAAAGGCGCCAGAGGAGCAGGCTTCACCAAACATTATCGGGTGGAAGCTCTTGTCAATATCCTGTACCATGT CACCACTCTCACCATTTCAGCTCATTTTCTTGAGGTATCTCAATCAATCTATTCATCTATTGTCTATCTATATATCTATC TATATCTATCTATGTGTCTACTTGATAGCTCTCACTAATGTCTCATTGGTTTTGGGGAAATTGCAGTTGTCTCTTTCTAA CAAATGATTTTTTTCATTGCTCGACTTTGTGTTGTCACTTTTTGGAAAGTTGATCTTTTCCGGCCAACCTCTTATAAAAA ATTTTGTCTATTGATTGTTATATTGAATGGTTGAGATTGGTCAGTAAAAAATTGAATTATAAAATATGTGGTTGGTTAAT TTGTTGCTCGAGGGGCAGAGAGGATCTAAATCCTCATTTTACAAACCCTAGCTAGATTAAGATTGTTTGTCCCCAAATCT TGTCTATTTTTTTATGTGTTTTTTTTAACGTTTATTTATGTGTTTGATCAATAGGATTTTGCCGTGTAATGTAATGTCAG TAATGTAATTTAAAAATACTAAAAGTTACCCATATAATCAACCAACTCATGTTTTAATTCTTAAGTGATATGCTCAGTTT TGTAGGAAAAAGAGACATGAAAAGAGATAAAATATCTTGATATAGCTTCCTTATCATTAGACCATAGTTTTTTTTTATCT CCATGTCTTAGGGTGTGTTTGTTTACAAGTTTCCTATTTTATTAAGTGTTTTGCTATTTTTTGTGAAAAAAAAAGTTAGA GGAGTATTATCTTTTTCATTTTCATACTTTTGAATTGGTAAACAAACTGGCTTGCTTTAATCATCGCTTCTGCATTTCAC TCTCAGGCTAATTATGATTGAAGTGTCTACATACCATTTTGTTTTATAAATCATTCCTGTAAATATGTATGCATGTTTTG ATAGATTATATTGATCTAATTAAAATCTCGAAATTCAGTCATTGTCTGCTAGGATTCGTCTTGGTTGGGTTTTTCGAGGA TCATCCTTCACATTAGCGCATCTCAGGGAGCTTCAGTTGTTCATGGAAACGTCAAGTTATTGCAGCCCATATGACATTCT CTTGTTTGTCAAGAATTGTCCAAACATTGAGAGACTCTTCATTGATGTGAGTACTTTACTATTAATTGATTAATGAATGC CCACTATTTCAAGTACTAATTAATTTGCTCGCATATGATATGCTTTCACTATCAAAAGATATAGTTTTGATTCCTACTTG TTTTGCACTATCAAAAGCCTTAATTCTCAATCTATATTTTGTAGTATTGTTTAATTTATTGTATGATTTTGAACTATATT GATTGCAGATGCATAATTTCGATTTCAATGGTGGAGTGTACTGGGAGGTGCATCAGAAACCTAAGCTTGACGAGTTCAAT GGCTACTTTAACCAGCTCAGGACTGTTAAGATCAAGGGATTCAAGTTTGGACGGTGTGAACTTGTGTTGGTGAAGTATCT TCTGCAAAGGTCAATGGTTTTGGAGCACCTGATTTTGGTCACACAGAAGTTTGAAGAATTTGCGTTTGCACCCAAATGGA TCTATCTCTTTCATTCTTGGAAGGCATCACCCATGCTCAACATACATTTATATGGACAGTCCTCTGACAAGAGTGGCGTT AATCCAACCCATTCAAAGAGATTGCGCTGATCATCATCCAAAATAGTTTTGTTGGGTGCTTTTTAAGGAGGTCCTTTATT TAGTCTATAGAGAAGTTTAAAAGTAAAAAATCAACAGTTTGGTTAAAATTATATGGTAAGACATTAGTGTTATGTTTAGA AGGATAGCCTTTGAATAAGATTAGTATTTTGTTAACATTGGGTTTGAAGGTAAAAGGATTGGTTTTTCTATAATAAAAAT ATATATATATGAAGAACTAATCCTTAAGATGTTCAATCCTATTTTAAGCCAATACTAAACTTTATTCAAGTTATTTAGTT GTTTTTCAGTTGTGGCACAGGTAGCATTGAATTAAGTTGCTTTTGGAGAGGTTATAAGTAGCAATCAACAAGAGAATTCT GTAAAAGACCTGATGTAAATTACAGGATTCTCCGGTGTTTACCTG
CDS sequence (LotjaGi6g1v0338800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCAACAACCCATCATCATCATCATTTTGTCCACCGCCACCATCCATGGCCACCACCAACCCTGAAAAATCCTC TCCCCCAGCAAAGAAAGCCAGGAAGGAAGGAGAATCATTTGAACTTCCTCCTCTAACTCATTATCTCCCAGAGGATATCC TTGAGATTGCAATGACCCTTTTACCCTTGAAAGAAGCAGCTAGGTTTAGCACTGTGGCTACCAGGTTCAGCAGAACCTGG TGCTTCAACAGAAAATTCATCTTTGGTAGAGAACTCTCTCTCAGGAATGACCAACAAGCCCACACCACGCTTGTTGATCG CATGTTCGAGTCTCACCAGGGAAATGAGATCCAGTGCTTTCAGGTGCACGTGGATCCCATCGGTGTCGAACAACTGATCA TGAAATGGCTGAGAATCTGCGGTGAGAAGAAAACAGAGGACGTGTTGCTGAATTTCCTAAGACGGGGGTTCCGTCTAAGC CCCGATGACATCGACTGCCTTAGTGAAAGTCTTAAATCTCTGAATCTGGTTCGCTGCGGAATCATGATGCCACCCGTCAC AAGGAGCATGCAGTTCCTGCACACCGTGATTTTGAAGCAGGTTGAATTGGTATCAGATCAGCTTGAGAGTCTGGTTTGGC ATTGCAGGGCGCTTGTGAATTTGGAACTATTTCAATGTCGTGGGCTTCAGAGTGTGAGGATCTATGCCAGGGCGCATCGG CATTTGAGGACGGTGAAGGTTTCTGGGTGTGCTGGTGTGAATTGGATGATGATTGATGCCCCTACAATTAAGTGTTTTTT CTTCGCTGGTGTTCGACCAACAATCTTATTTGGTGATTTTGGCGAAGTGTACTTGCAAGAAGCCATCTTCAACTTTGTGC CTGCCAAAGGCGCCAGAGGAGCAGGCTTCACCAAACATTATCGGGTGGAAGCTCTTGTCAATATCCTGTACCATGTCACC ACTCTCACCATTTCAGCTCATTTTCTTGAGTCATTGTCTGCTAGGATTCGTCTTGGTTGGGTTTTTCGAGGATCATCCTT CACATTAGCGCATCTCAGGGAGCTTCAGTTGTTCATGGAAACGTCAAGTTATTGCAGCCCATATGACATTCTCTTGTTTG TCAAGAATTGTCCAAACATTGAGAGACTCTTCATTGATATGCATAATTTCGATTTCAATGGTGGAGTGTACTGGGAGGTG CATCAGAAACCTAAGCTTGACGAGTTCAATGGCTACTTTAACCAGCTCAGGACTGTTAAGATCAAGGGATTCAAGTTTGG ACGGTGTGAACTTGTGTTGGTGAAGTATCTTCTGCAAAGGTCAATGGTTTTGGAGCACCTGATTTTGGTCACACAGAAGT TTGAAGAATTTGCGTTTGCACCCAAATGGATCTATCTCTTTCATTCTTGGAAGGCATCACCCATGCTCAACATACATTTA TATGGACAGTCCTCTGACAAGAGTGGCGTTAATCCAACCCATTCAAAGAGATTGCGCTGA
Protein sequence (LotjaGi6g1v0338800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNNPSSSSFCPPPPSMATTNPEKSSPPAKKARKEGESFELPPLTHYLPEDILEIAMTLLPLKEAARFSTVATRFSRTW CFNRKFIFGRELSLRNDQQAHTTLVDRMFESHQGNEIQCFQVHVDPIGVEQLIMKWLRICGEKKTEDVLLNFLRRGFRLS PDDIDCLSESLKSLNLVRCGIMMPPVTRSMQFLHTVILKQVELVSDQLESLVWHCRALVNLELFQCRGLQSVRIYARAHR HLRTVKVSGCAGVNWMMIDAPTIKCFFFAGVRPTILFGDFGEVYLQEAIFNFVPAKGARGAGFTKHYRVEALVNILYHVT TLTISAHFLESLSARIRLGWVFRGSSFTLAHLRELQLFMETSSYCSPYDILLFVKNCPNIERLFIDMHNFDFNGGVYWEV HQKPKLDEFNGYFNQLRTVKIKGFKFGRCELVLVKYLLQRSMVLEHLILVTQKFEEFAFAPKWIYLFHSWKASPMLNIHL YGQSSDKSGVNPTHSKRLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 38 | 38 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| PANTHER | 43 | 495 | 453 | 1.1E-87 | – | |
| PANTHER | 43 | 495 | 453 | 1.1E-87 | – | |
| Gene3D | 46 | 281 | 236 | 1.0E-12 | ||
| SUPERFAMILY | 161 | 447 | 287 | 3.41E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0338800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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