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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0340200 |
| Transcript ID | LotjaGi6g1v0340200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT1G04625.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151T7J2|A0A151T7J2_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi6g1v0340200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65406419..65407804) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGAAGTGTCTTTTATTCTTCTGGGACAGCCTCTATATGGTAGAGTTCATGCACGCAAACAATTAGTAAACCGTTTAA AGAATATGCTTAAGTTGTTGAGAGTTCCTGAAGGAAACCTTTCTGGCCATTTTCCATGGATTATTCCGGTATCAAAATGT TGCCTTGTGTTTGTGAAATTCTGAATCTTCTTTGCTTTTCCCTCACTCCAACTTCATTAATTAACGTGAAGCAGCATGTT CCATTGCTTCTATAATAAGTAGGATACCCTCTTTCATCATCCCTTCAATTCCATAACATTGCCTTTCAATTTCAAGTTTG AAGGTTTCTGTTTCTTCATCATCTCTTATATATCTTTGTTGTTTTGTAAAATCTCTTCTCAAAATTGGTAAGCATAATTT ATCCTTTAATTTCATTTTTATCTAGGATAGTTAAAATGTTAGGTATATTAAACATTTTTCGTTGTCAAAAGCTTGTGCAA AGTCCAGTTTGTCAGTTGATAAGGTATTTCCACAAGGAACCAATTCCAGTGGAATGGAAAAAACCAAAATTCGGGTGGAC CAAATTAAATTTTGATGGTTCTTTCAAAGGTTTAAGTGGGAAAGGTAGCATTGGAGGGGTTGTGAGAAATCACAATGCAG AATTTATGCTTGGCTATGCTGAATCCATAGGAAGAACCAATAGCACTCTGGCTGAACTCATCGCGCTTCGGAGAGGGCTT GAATTGGTGCTTGAAAATGGTTGGAATAGTGATATTTGGCTTGAAGGAGATGCCAAAACATTGGTTGAGATCATAGTGCA AAGGAGACAAGTTAGGTGCAAGGAAGTGCAAAGACATCTTAGTCATATAAATTCCATTCTGCCTGAGTTTGACAATTGTA TTGTGAGTCACATATTCAGGGAAGGGAATAGGGCTGCTGATAAATTTGCAAAAATGGGGCATCACTTACAGGAACCTAGA ATTTGGAAATATGTTCCTCCTAATGAAGTCTTGACTAATTTGGAGGAAGATGCTAAAGGTAAAATCGTTCTGCGAAGGAA AGGATATAGATCATAATAGTGTATATTAAATTTATTCATTGTTTGTATATAGGGAATGCAAATTCTCTTTTGTTAACGAT TATGTATTATGTACATATTCATATATAGATATCTTGTGTTCATGTGTACAGATGAAATTATTTGTTGAACATATATCCTA ACTTTGGAGCAACAATTTCTTCAAAGTTCATATTGAATATATGTATATATGCACTCCGAAATTGAGATGCTTACTGCTAA TTTATTTTCTTGATTGTGATTATTGTGGAGACAGAAGTGACAAATATTCTGACTAAATTATATAGAGGACCTTCTCAACA ATTTTTTTTGTAAGCAACATAACATA
CDS sequence (LotjaGi6g1v0340200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGGTATATTAAACATTTTTCGTTGTCAAAAGCTTGTGCAAAGTCCAGTTTGTCAGTTGATAAGGTATTTCCACAA GGAACCAATTCCAGTGGAATGGAAAAAACCAAAATTCGGGTGGACCAAATTAAATTTTGATGGTTCTTTCAAAGGTTTAA GTGGGAAAGGTAGCATTGGAGGGGTTGTGAGAAATCACAATGCAGAATTTATGCTTGGCTATGCTGAATCCATAGGAAGA ACCAATAGCACTCTGGCTGAACTCATCGCGCTTCGGAGAGGGCTTGAATTGGTGCTTGAAAATGGTTGGAATAGTGATAT TTGGCTTGAAGGAGATGCCAAAACATTGGTTGAGATCATAGTGCAAAGGAGACAAGTTAGGTGCAAGGAAGTGCAAAGAC ATCTTAGTCATATAAATTCCATTCTGCCTGAGTTTGACAATTGTATTGTGAGTCACATATTCAGGGAAGGGAATAGGGCT GCTGATAAATTTGCAAAAATGGGGCATCACTTACAGGAACCTAGAATTTGGAAATATGTTCCTCCTAATGAAGTCTTGAC TAATTTGGAGGAAGATGCTAAAGGTAAAATCGTTCTGCGAAGGAAAGGATATAGATCATAA
Protein sequence (LotjaGi6g1v0340200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGILNIFRCQKLVQSPVCQLIRYFHKEPIPVEWKKPKFGWTKLNFDGSFKGLSGKGSIGGVVRNHNAEFMLGYAESIGR TNSTLAELIALRRGLELVLENGWNSDIWLEGDAKTLVEIIVQRRQVRCKEVQRHLSHINSILPEFDNCIVSHIFREGNRA ADKFAKMGHHLQEPRIWKYVPPNEVLTNLEEDAKGKIVLRRKGYRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 200 | 198 | 6.0E-78 | – | |
| PANTHER | 3 | 200 | 198 | 6.0E-78 | – | |
| ProSiteProfiles | 38 | 170 | 133 | 11.291 | ||
| SUPERFAMILY | 40 | 166 | 127 | 6.45E-17 | ||
| Gene3D | 42 | 170 | 129 | 1.9E-21 | ||
| CDD | 44 | 166 | 123 | 6.49392E-34 | – | |
| Pfam | 45 | 168 | 124 | 5.5E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi6g1v0340200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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