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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0341500 |
| Transcript ID | LotjaGi6g1v0341500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT4G03270.1 Cyclin D6;1; Swiss-Prot: sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1; TrEMBL-Plants: tr|K7M9Z7|K7M9Z7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0341500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65511391..65513996) extracted from Lotus japonicus Gifu genome v1.2.
GGTTGACAATAAATCCAAATAGGACTAGTTGGTTTTCGAGCTACTACTATCTTGTTCTTAGTGATGGATTCAGCTACACT CCTTAATGTTTAGCAGCGCTTATCACGGTCAAGAGAGTGAATCCATACCACAAGTGTCTCTACCATGCTCTGATTACAAT ATTAAGCAGAGGACCACTTACACTCTGATGGTGATTTTAGACATGTTTTACAGCACAAAATTGCTAGAGTGAGGAATAAA GGGTCCATAGTATGTATGTGTGAAATGTGAACAATTCTTCCAACTTAGAAGCCAGCACTGTCACTTTAATTATGAGCACA CAAAACGAGGCTTCTGTTTCTTTTCCATCATTGCAGTTACCAGCTTAACACTTTTTGTCTCAATGTCTCATGTTTTATCC TTGAATTCCTCAATAACAATACACTGGCAGTAGTAGTAGTAGTAGAACACAAGTCTAGGTAAAGAAAGGGAAGATGGACT TTGATATTGAAGACCCACTAGCTAGTTTCAAAGAACAGAAAACATGTACTCCTATATCAGAACTCTTTGCCTCGGAATCT GATCACATGCCCTCACCAAACTGCTCAAGTTCAACACATTTTCACGTTTTCCAATGTGAAGCCATTTCTCTCACACTTCA GGTGAAAAGTTAGGCCTATATAGCATATCTTCATCAATTTCTCCTCTTTCATGTCACATTTGTTACAACTTGTTATGTTT CTTCAGGTCCAGCTTTCTTGCAATTTGGACCCATTTGTAGCTTATCTTGCTATAAATTACTTGCACCGCTTCATGTCAAT CCAAGAAATTCCGGTAATCGAACTCCCCTTTATGCTTATGTCTACGAATCACATGTTTGTATCAGCTTATTTTTTTTTCA AAATCAATTCTGACACCAAAAAACTACTCACAAAAACTTCAATTGATTGACTTTAGAATCAATTGAAGAAGAATTTCCAA ATATGCTAAAAAGTAAGGAAAACATGGGCCAATTACACCTCTGGTATTCCAAGATTTCCAAGAATTTTTTCACTGACATT AGTCCTCTGAGTTTGAAGCAGAAGAAGCCATGGTTACTCAAGCTTGCTGTCATATCCTCTCTTTCTCTCGCTTCAAAGAT GATGAACACACCTATATCATTTTCCATTATGCAGGTAAATATTCAAACTCATGTGCTTACAATCATTGATGGAAATAAAA CATGTAACAATGCCTTAGTAACTTGAACTACTCTTGTTTGCAATCAATGAAACAGAAAGCAGGTTGCAACTTTAAGGCTG AAAATATTCAGAGAATGGAACTTATCATTCTGGGGGCTCTGAATTGGCGTATGAGGTCAATAACACCTTTTCCCTTCTTG CATTTCTTCATCTCTTTAGCTGAAATCAAGGACCAATCACTGAAGCAAGCACTTAAAGAGAGAGCTTCAGAGATAATCTT CAATGCTCATAATGGTAGTTTACTAATTTACTTCTCATATTCAAACATGTGACTCTATTTTAATGTTCAATTCCAATCAG CACAAACACTGAATTGATTACCTCTTATGGCTGCAGACATTAAGCATTTAGAGTATAAACCTTCAACTATTGCAGCAACT GCCCTTATCTGTGCATCTCATGAACTAGTCCCCCAGCAATATTCTGTTTTGAGAGCTTCAATTACAGCTTGTGAGCATGT AGACAAGGTAAGTGTACATTCATGATTCAACTCAACTACTTATGCTTTAAAGCAAGTGTTTTGATTCTTTATTGGTATAA GGGTGAAGATATTGGTGGTGGTTGATGTAGGAGACATTGTCCAAGTGTTTCGATTTGATGCAAGAGATGGTGAGAGTAGA AGCACTGATGGTAGATACTACTAGCAGCACTGAAACTCCAGTGAGTGTGCTGGACAGAAGCACCAAAAGGCAGAGAATTT GATGGTCTCAGTTGCAGAAACAAATTCCAATTTTCTCAAACTTGGAAGCTGAGGGAAAACAATCTTATTCTGTGATCATG TGTTTTCTGTTCATGTTTCCACTCAGTCCACAAAAAGAGACAGCAGAGAGGGCTACAAGGTCTTGATTTGGAACATGGAG TTGAGAGATCCATACACTCATGAGAGTGCCAAAAAAAGAAAAACTGGTGTACTTTGCAGAAAATGAAATTCAGAAATTAT TGAAAACATAATGTGGGGGTTAATTTGAATCCGATTAAACATTTATTAAGGTCACCACAGAATTATATCTTTACCTGGTA CATTTCTTTCTCTCTTCCTCTCTCTCTTACACTGACATATTATTATAAATGGTCACAAATAAGAAATGGTCAAAATCTTA ATCCCAGGCAGGAAATCATGCCTTCTATCTCCAACAAAAGAAGTCATAAAAAGCTTGACTTACATGTTTGGATTCATTTC ACTTACATCAAAATCAATTATGAAACTTCGAAGCTACTCACATAAGATTCTCCTCAAATTGGTTTCGTCTTTAGAATCAA TTGTAGAAAAAATTTCAACGTGCGTGGGGTGGGAGTGCATGTCACTAAATGTTCCCCTTGTTGCATTGCTACTCAATTAC TTGATATACAAGGAAGCCATGGCATTTTTCCGCTTAGTGATAAAAA
CDS sequence (LotjaGi6g1v0341500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTTTGATATTGAAGACCCACTAGCTAGTTTCAAAGAACAGAAAACATGTACTCCTATATCAGAACTCTTTGCCTC GGAATCTGATCACATGCCCTCACCAAACTGCTCAAGTTCAACACATTTTCACGTTTTCCAATGTGAAGCCATTTCTCTCA CACTTCAGGTCCAGCTTTCTTGCAATTTGGACCCATTTGTAGCTTATCTTGCTATAAATTACTTGCACCGCTTCATGTCA ATCCAAGAAATTCCGCAGAAGAAGCCATGGTTACTCAAGCTTGCTGTCATATCCTCTCTTTCTCTCGCTTCAAAGATGAT GAACACACCTATATCATTTTCCATTATGCAGAAAGCAGGTTGCAACTTTAAGGCTGAAAATATTCAGAGAATGGAACTTA TCATTCTGGGGGCTCTGAATTGGCGTATGAGGTCAATAACACCTTTTCCCTTCTTGCATTTCTTCATCTCTTTAGCTGAA ATCAAGGACCAATCACTGAAGCAAGCACTTAAAGAGAGAGCTTCAGAGATAATCTTCAATGCTCATAATGACATTAAGCA TTTAGAGTATAAACCTTCAACTATTGCAGCAACTGCCCTTATCTGTGCATCTCATGAACTAGTCCCCCAGCAATATTCTG TTTTGAGAGCTTCAATTACAGCTTGTGAGCATGTAGACAAGGAGACATTGTCCAAGTGTTTCGATTTGATGCAAGAGATG GTGAGAGTAGAAGCACTGATGGTAGATACTACTAGCAGCACTGAAACTCCAGTGAGTGTGCTGGACAGAAGCACCAAAAG GCAGAGAATTTGA
Protein sequence (LotjaGi6g1v0341500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFDIEDPLASFKEQKTCTPISELFASESDHMPSPNCSSSTHFHVFQCEAISLTLQVQLSCNLDPFVAYLAINYLHRFMS IQEIPQKKPWLLKLAVISSLSLASKMMNTPISFSIMQKAGCNFKAENIQRMELIILGALNWRMRSITPFPFLHFFISLAE IKDQSLKQALKERASEIIFNAHNDIKHLEYKPSTIAATALICASHELVPQQYSVLRASITACEHVDKETLSKCFDLMQEM VRVEALMVDTTSSTETPVSVLDRSTKRQRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 258 | 257 | 3.4E-90 | ||
| PANTHER | 2 | 258 | 257 | 3.4E-90 | ||
| Gene3D | 22 | 236 | 215 | 1.0E-33 | – | |
| SUPERFAMILY | 22 | 143 | 122 | 4.04E-22 | ||
| Pfam | 28 | 143 | 116 | 1.8E-15 | ||
| Gene3D | 34 | 144 | 111 | 1.0E-33 | – | |
| SMART | 52 | 137 | 86 | 1.8E-5 | ||
| CDD | 61 | 136 | 76 | 8.19455E-11 | ||
| SUPERFAMILY | 129 | 243 | 115 | 3.4E-11 | ||
| Pfam | 146 | 241 | 96 | 3.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Biological process | Regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
Expression pattern of LotjaGi6g1v0341500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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