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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0341800 |
Transcript ID | LotjaGi6g1v0341800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger, B-box; TAIR: AT4G27310.1 B-box type zinc finger family protein; Swiss-Prot: sp|Q1G3I2|MIP1A_ARATH B-box domain protein 30; TrEMBL-Plants: tr|V7BQM0|V7BQM0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0341800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65525777..65526819) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAAAATAGTCACAAGTTGTATTTTGTCTTTTCTGGTTCACAATTTAGTATATCTAGCCTTTGCTTATAACAACAACA AAGACAAAACGAGTTAAGGTTTGAGAATTGAGATGAAGAAGTCATGCGAGCTCTGCAACAGTCCCGCAAAACTGTTCTGT GAATCAGATCGAGCCAGCCTCTGTTGGCAATGTGATGCCAAGGTTCACTCTGCAAACTTCCTCGTCACCAAGCATTCCAG GTTTCTCCTCTGCCATGTTTGTCAATCTCCAACAGCTTGGCATGGCACCGGGCCCAAGTTTGTACCCACAATCACCGTTT GCAATCACTGTGTTACCAAACAAAATGATCATGATGATGATGGTGAAGGAACAGAGGAGGATGATACAGAAAACGATGGT GATACTGATGTAGAAGAAGAAGATGATGATGATGATGAAGAAAACCAAGTGGTTCCACCATGGTCATCTACACCGCCACC ACCGGTTTCAAGTTCTTCAAATAGTGCAACTAGTTCTAGAAGATTCTCTCATGGTCAAGACTCAAGAAGGTGACTAATAA TGTTTTCTTCTTGCTGCTGAAGCTAAGTCCTCTGTTTTGTAAAGCTATGATCACAAGTATAGTTATGTTTCCAAGATCCC CTGTTTTTCTTCCTCTGTTCTGTTCTGTTTTTTCTTGTCCTTCTAATTTTGAGGGTTTTAGGCTCTTTTTTTTTAATTCT CTGCTCATTAGCAATACCTCCAAATTCAATCAAGGCATTTTCTGTCAAATAACAAAGAGGAAATGCCTTGGTAGATTGAT TCTCTCAAAGGGTTCTTTCAGATTGCTTGGGGATGAATCTTCCATGTGAAAGAAGATTGTTGAACATTTTTTATAATAGT TATATAACCGATAAATTACAGGTTGCAAAATCAGTTGTTGGTGGTTTATGTGCTGTAATATTTGCGTTTCTTTAATGCCA ACAGTCACTACTATTGATTTTGATTCACTAGACTAGATTTGTATATGATGAAAGGTCACAATTATAGAGCATTAAACTTG TGG
CDS sequence (LotjaGi6g1v0341800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGTCATGCGAGCTCTGCAACAGTCCCGCAAAACTGTTCTGTGAATCAGATCGAGCCAGCCTCTGTTGGCAATG TGATGCCAAGGTTCACTCTGCAAACTTCCTCGTCACCAAGCATTCCAGGTTTCTCCTCTGCCATGTTTGTCAATCTCCAA CAGCTTGGCATGGCACCGGGCCCAAGTTTGTACCCACAATCACCGTTTGCAATCACTGTGTTACCAAACAAAATGATCAT GATGATGATGGTGAAGGAACAGAGGAGGATGATACAGAAAACGATGGTGATACTGATGTAGAAGAAGAAGATGATGATGA TGATGAAGAAAACCAAGTGGTTCCACCATGGTCATCTACACCGCCACCACCGGTTTCAAGTTCTTCAAATAGTGCAACTA GTTCTAGAAGATTCTCTCATGGTCAAGACTCAAGAAGGTGA
Protein sequence (LotjaGi6g1v0341800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKSCELCNSPAKLFCESDRASLCWQCDAKVHSANFLVTKHSRFLLCHVCQSPTAWHGTGPKFVPTITVCNHCVTKQNDH DDDGEGTEEDDTENDGDTDVEEEDDDDDEENQVVPPWSSTPPPPVSSSSNSATSSRRFSHGQDSRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 39 | 39 | 4.6E-5 | – | |
SMART | 1 | 46 | 46 | 5.3E-11 | ||
ProSiteProfiles | 1 | 46 | 46 | 8.944 | ||
PANTHER | 3 | 137 | 135 | 8.1E-58 | – | |
PANTHER | 3 | 137 | 135 | 8.1E-58 | – | |
Pfam | 3 | 42 | 40 | 6.4E-8 | ||
CDD | 5 | 46 | 42 | 9.55382E-6 | ||
MobiDBLite | 78 | 146 | 69 | - | – | |
MobiDBLite | 83 | 112 | 30 | - | – | |
MobiDBLite | 124 | 138 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0341800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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