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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0344300 |
| Transcript ID | LotjaGi6g1v0344300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT3G22104.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C5J4|Y3210_ARATH BTB/POZ domain-containing protein At3g22104; TrEMBL-Plants: tr|A0A151S0Z2|A0A151S0Z2_CAJCA BTB/POZ domain-containing protein family; Found in the gene: LotjaGi6g1v0344300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65700380..65703995) extracted from Lotus japonicus Gifu genome v1.2.
CCGAACATTGTGTTCACGTCATGGTAATGTTAGTTGCTGCCTCAATAATACTAAACAAACCATATTGGCGGTGACAATGA TGCTGCTAGTTCTTGTAGGTGTGATTGCAATGGCAGTGATGAGAATAAGGAAATGGAATCAAGTAGTTAAGGCACGCGTT TAGTTATTATTTAAATTTATTATTATGGAATTTGAATGAAATTTCATTCACTATTTCACTGTGTAGGGAGTTGTCATCTC ATCTCTTTCACTAATTAAGTCAATGTTAGTTGGTCACGGATAACGGCCTGTGGAATTTGAGATTAAATTTTCCCCGGAAA GCAAAATTTTGTTCATTTTCCCATTCCTTTACAATGGGATGGATCCACTGAATTGGTAAAGCAAGCAAGCAAACATCAAA AATTGGCGGCATGAGTAACGGAAAAAGGCAAGTGCCAAGTTTTAAAATGCAATTGAAAATTTTAGATGTTTTACTATATG AATAGTTATTGTGTCATCCTCTTAGCTCTTTTTTGACTAAGCCAAAAACAACACCTTTTCTATTCACATCAATATTCTTC CCTTGTAGCTGACAATCCTTTACACACATGTTCTCATAAACTTCCCTTTTCTAATTGGTCTTTCATGATTTACATTTTAC ACAGCTTTTTCATGCCCCACAAACTTCCTAGTCTTCAAATGCTTTTTTGATATATATACATAATATACTAGTTAATTTAG GAACAATGAGAGCTTGAAACGTCCTTGAAGTGAATATTGAGGACGAAATCTTCATGGTTAACAAGGTAACTCTTTTTGTT TTTCAGTTAATTTAGTTTTCTTGAGTGAAACTATTGGTGATTGGCATGCTTGTTCTTTTTGCTCCTAACAGAATGCGAGG TAGACCCTAAACATAACATTACACCATAAAAGCATGGCAGGCATGTCACTTGTGGACCTACTTGCAAAACCCTTTACTAT TAATTATGGATTCCACCAAGTGCATTTTCAAACATGACCCCCATGATTTATTATCTCATATTCTCAAATACCCTTCTAAT TGTGTCAGCACATTCATTCACCTGTGAGTATATTTTAATTCCATGATGGATTTAATGTTTCTTTTGGGTTGGTAGTGTCC TCTAATTACATTGATTGATGTGTGATGTATCTTATTCCCTCATTTGCAGTCATGAAAATTTTATGTGTTATCTGTTGCTT TCACTCACAGTATCATTTTTTTCTTTAGGCAAAGAAACTAGACATTTCAAAACTTCTTCAGGAAATGTAACCTTCATACA TACTGTGCAGAATATGGGGGCCTGAATTTAATGATTTTCAAGGGGATGCACAATTGCACATGCTTTTGATCTCATAGTTT GGCTTAGCTACAATAGTAGCAGAATGGAGTTAACTCCGTCCAATGTGGTCCGGCTATGTTCTTCTGCCGACTTCTCAGAG ATGGATTGTGATGGTCTTGGAATTGGAACTCCCAGCTTGAAACCACACATTGAGAAATTTCTTGAAGGGATTCGCTTTTG GACTTTCTCTGAGCTCATAGAAGCATTGAAACAGTGTCAACACTTAATTTCGTCCAAAAGTTATTCAGCAATTCTTGACA GAATTGTGGATCACTTGATGGAAAGGCTCGCTTCGCCATGTAATACAAGCCCATATACATGTTCCTCTAACCGATCCAGC TCCCAGTTTTCCTCTGATACTAGCAGTAACAACAGCTGGAGAAGTTACAGCTCTGGGGCTACATGGTGGTTTGAACATTT TCGGTTCTTGAAGATTGATTTGTTGGAGAAGGTCATAAGGACAATGATATCTCATGATTTTGATCATATTGTAGTATCTA AGTTTCTATTCTATTATCACAGCTTCAATTGTCTTGGTTCTGCACAAGCTGAGATGATTGGAACAACTAAGGTCATAGTC AATCTTCTTCCATTGCTAGATATGAGATCAATTTCTTGCAGAGATTTATTCAATCTTAATAGAATTGCTACTAGCTTGAG AATAAGCAGATGCTGCAGAAACAAGATAGAAAGTCTTATAGGTCCTCTGCTTGATCAAGCAACAATTGATTATCTACTTC TTCCATCTCCACATGGGAAGGATCATGCATTTGATGTTGATTTTGTCCTGAGGCTCATGCGTACATTTTTGTTTGGAGGA AGTTTAGAGTTAAGTTTGATTAGGCTCAAGAGAGTTGTGAAATTGATGGATTTGTTCATTGTGGAAGTTGCACCAGATCC TCATCTGAAACCTTCTGAATTTGAAGCATTGGTTGCAGTGCTCCCAGATACAGCAAGGGAATCTCATGATCAATTATACC TGGCCATTGACATGTATCTAAAGGTAATCTACAAAACTGCAATAGTCATTTGCAATTTTACATTTTACCATGAACTATTA GCATGTTTGATTCTACGGTGAAATGTTCTAGAACCACTTCTTGTTTGAAACTACAGGTCTTAGCTTCTAAGTGTGTGTTT GGATTAGCATTAGCAAACTTAATTCTACTAAAATTGCGCATGGTAAACATGAGTGTAAATTATGCGATTTACGTTTGGAT ACCTTTATGGAAAAGTGATTTTGTATAGTAATAATGTTATGAAATTCAGTTGTGAAATCTCAGAATTGATTAGGTTCAAC GCAAAAGCAACTGTTTGTCATGGTAAATGGATCCAATTCTAGACTGATCAAATCAACTTTACTGGTACACTCAAACATCA TTTCAACTGGTCAGAATTGATTTTAACCAAGTGGAATTGATTCTGTTTTCCAAAATGCTCTAACCTAAGTGAACATGCTT TGAATTCTCTGAAAATTGTGAAACCAATGATACTTGGAATTGACACTTCAAAAAGTTGAAGCTTCTTATTGTTTATTTTA TTGATCCTACTGTTTTTATCTGCTTCTAGTGTTTTATTGATTCTCTTTTCTATACTTGAGCCTTCACTGATAAAAATCCA TAGGTGCATGCAGGCTTATCTGAAAAAGAAAAGATGAGTATCTGTTCTGCACTGAACCATGAGAAGCTGTCAGCTGAACT TTTGAGACATCTCACTAGAAACTTGGTGTTTCCTTCAGAAGCAAAACCTAGAGCTCATGTTGCTAAACTGAGCCGAATGA AAACCTTACTCCAGGAAAATGATCATGTGAAAAACATTTTTGACTCCATGTTTCGAAAAAGCTTCAAGAACATTGATGTG AAAGAGGATGTTGAAAGCAGAATTCATGATGCTGAAGATCTTAAGCAATCATCTGAAGTTCAAAAGCTTAGAGGAGACTT GGAAGGAACGGAGAGTGAAAAGAAGTCAGGGATTAATGTAATGAACAATGCTACATACTTGCCAAAACTCTGTTCATGAT TATTAGTTTCATATTTGACACTGAATTTTGAGTTTTCCCTTGTAGCTTTACCACACTATTTATCTTCTAGTATTCATGTA CATATATTCTATTCTATGTAACAGACTTCAAATATGATTTTATACAAGAGAGAATTGCCATTTTGTTTGCTCTTTGTGCA AAAAAGAAGGATAGTAAATAAGTATTGAAGGTCCCTGAAATTGTATGACGTATGAAAATAAGTCTCTGAATTTTTTTTCC CGATTCCGGATCCCTG
CDS sequence (LotjaGi6g1v0344300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTAACTCCGTCCAATGTGGTCCGGCTATGTTCTTCTGCCGACTTCTCAGAGATGGATTGTGATGGTCTTGGAAT TGGAACTCCCAGCTTGAAACCACACATTGAGAAATTTCTTGAAGGGATTCGCTTTTGGACTTTCTCTGAGCTCATAGAAG CATTGAAACAGTGTCAACACTTAATTTCGTCCAAAAGTTATTCAGCAATTCTTGACAGAATTGTGGATCACTTGATGGAA AGGCTCGCTTCGCCATGTAATACAAGCCCATATACATGTTCCTCTAACCGATCCAGCTCCCAGTTTTCCTCTGATACTAG CAGTAACAACAGCTGGAGAAGTTACAGCTCTGGGGCTACATGGTGGTTTGAACATTTTCGGTTCTTGAAGATTGATTTGT TGGAGAAGGTCATAAGGACAATGATATCTCATGATTTTGATCATATTGTAGTATCTAAGTTTCTATTCTATTATCACAGC TTCAATTGTCTTGGTTCTGCACAAGCTGAGATGATTGGAACAACTAAGGTCATAGTCAATCTTCTTCCATTGCTAGATAT GAGATCAATTTCTTGCAGAGATTTATTCAATCTTAATAGAATTGCTACTAGCTTGAGAATAAGCAGATGCTGCAGAAACA AGATAGAAAGTCTTATAGGTCCTCTGCTTGATCAAGCAACAATTGATTATCTACTTCTTCCATCTCCACATGGGAAGGAT CATGCATTTGATGTTGATTTTGTCCTGAGGCTCATGCGTACATTTTTGTTTGGAGGAAGTTTAGAGTTAAGTTTGATTAG GCTCAAGAGAGTTGTGAAATTGATGGATTTGTTCATTGTGGAAGTTGCACCAGATCCTCATCTGAAACCTTCTGAATTTG AAGCATTGGTTGCAGTGCTCCCAGATACAGCAAGGGAATCTCATGATCAATTATACCTGGCCATTGACATGTATCTAAAG GTGCATGCAGGCTTATCTGAAAAAGAAAAGATGAGTATCTGTTCTGCACTGAACCATGAGAAGCTGTCAGCTGAACTTTT GAGACATCTCACTAGAAACTTGGTGTTTCCTTCAGAAGCAAAACCTAGAGCTCATGTTGCTAAACTGAGCCGAATGAAAA CCTTACTCCAGGAAAATGATCATGTGAAAAACATTTTTGACTCCATGTTTCGAAAAAGCTTCAAGAACATTGATGTGAAA GAGGATGTTGAAAGCAGAATTCATGATGCTGAAGATCTTAAGCAATCATCTGAAGTTCAAAAGCTTAGAGGAGACTTGGA AGGAACGGAGAGTGAAAAGAAGTCAGGGATTAATGTAATGAACAATGCTACATACTTGCCAAAACTCTGTTCATGA
Protein sequence (LotjaGi6g1v0344300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELTPSNVVRLCSSADFSEMDCDGLGIGTPSLKPHIEKFLEGIRFWTFSELIEALKQCQHLISSKSYSAILDRIVDHLME RLASPCNTSPYTCSSNRSSSQFSSDTSSNNSWRSYSSGATWWFEHFRFLKIDLLEKVIRTMISHDFDHIVVSKFLFYYHS FNCLGSAQAEMIGTTKVIVNLLPLLDMRSISCRDLFNLNRIATSLRISRCCRNKIESLIGPLLDQATIDYLLLPSPHGKD HAFDVDFVLRLMRTFLFGGSLELSLIRLKRVVKLMDLFIVEVAPDPHLKPSEFEALVAVLPDTARESHDQLYLAIDMYLK VHAGLSEKEKMSICSALNHEKLSAELLRHLTRNLVFPSEAKPRAHVAKLSRMKTLLQENDHVKNIFDSMFRKSFKNIDVK EDVESRIHDAEDLKQSSEVQKLRGDLEGTESEKKSGINVMNNATYLPKLCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 432 | 431 | 4.1E-170 | – | |
| PANTHER | 2 | 432 | 431 | 4.1E-170 | ||
| MobiDBLite | 87 | 110 | 24 | - | – | |
| ProSiteProfiles | 120 | 371 | 252 | 56.341 | ||
| Pfam | 121 | 345 | 225 | 6.8E-50 | ||
| Coils | 400 | 420 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0344300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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