Transcript — View — Lotus Base

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LotjaGi6g1v0345500.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0345500
Transcript ID	LotjaGi6g1v0345500.1
Lotus japonicus genome version	Gifu v1.2
Description	AT4g33690/T16L1_180; TAIR: AT4G33690.1 G patch domain protein; Swiss-Prot: sp\|Q2SPG7\|PYRB_HAHCH Aspartate carbamoyltransferase; TrEMBL-Plants: tr\|I3T126\|I3T126_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0345500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:65821954..65824674) extracted from Lotus japonicus Gifu genome v1.2.

CGAAGTGTTACGAATACCCGGTGTCCGAAAGGGTAGTTCTGACATTTTTTAAAAAATCTGGGGTGCCATTTCTAAGCCCT GGGGTGCCAAATCCAGAGCTCGAAACAGAGAGAGAGGGGGAAACAAAACGAAGATTGAAATTGAAGCCTGAAGAGATCGT TGGACGGTGCCCGACGCAGACAGAGACAAGGTGCGTCGATTATTTTCCCCAATTTTGTATTTTGAGTTCTTCTCTAATTC TCTGGGTTTGCAAAGATTCCGACTTTACTGCTGTATTTGATCTCTGATTCTTCCTCCGTGAAAAAATTGGGTTTTGATTT TTACTCAATTTTGCATCTTTCTTGCCTGAAATTTCCACCCTTTATAGCTTGGAAGTTGGAACCATTTTGTGGGATGATGA AATTCTGGGGTTTACTGTATTGGGCTAGAACATGGTTAGATTTTTATTTTTTGGTGTGAATTTTAGGGTCCAATGTTGAT GATACTTTGAGTGCTACTTTTGTAATTAACTAGAAGTTTGATTAATAATTTACACTAAGAGAACTTTGGAAACTAGAAAA ATGTCAGTGATATATGAAATAATGGTTGTTTGTGAATTATCCCCTCGGAACACGAAACATCACACACACCACACTGAAGT TGTTTCTTAAATTTTTATTGAAGTCATTCATTTGTTTAAAATATTATTTTTAGAATTCTTTGTTTTGTTTTTGGGTGACA TGATCAGATGGATCTGGAGAGTGAAAACAGACTAGCTGCTATGCTTATGAGGGAAGCAGCTGAGTTGCGGCGGCAGGCTG AAAAAGAAGGTGTTCTGGCTTATCTTAGTAAGCCTAATGTCCGGAATCGGCCAAATTCACGCTTCCTCACTGCTACTGTA CTTGGGGTACAACAATGTTAGTCACTAATTTTACTGGTTATTATTGCTTTACATTGCCTTGTGTTTTATGGCTGTGCTTT TGAGAAAGTTTTAGGATTTTGTGGGAACTAGGAAATAATATTTTATATGCCTGTCATTTAATTGATCTGTTTGGTGAATG TGGGTATCTTTTGAGTTTAAAACATTCATATTCATTGTTTTTTTATTAGAGTGGGGGGTGGGTTTAGAAGAAGACAGGGG GGGAAACATTTACCATTACATATTATACAGACATATTGGAGAGCTTTATTCGACTTATGGGCTTTGTTCCATCTTTTTTC CTATTCTTTGCTTACTTACAGAGATCATCCAGAATGTTTGTCTCTTGTTTTTCCTTGGCTATATTGTCTAATTTATTCTG ACTTTCTCTTTCTTATTATATGCAAAGACAATGGGTTGGGTATGGTTTGAGTTCTTTAGAAGTGGGCTTTCTTCTTTCTA GTGTCTTCACATGCACTGTGTGCGTCTAGTATTCATGGGTGATATATGTGACTGCTTTCTCTGTCCAAGATGTGTATCCT CTACTCGTACTCATGGGTTACGTACTTGGTACACTTGCCGTACTTTGTTTATCAGGGTTTATAGGATTTAGGTTGGGATG CACTTCAGAAAGAAATGTATGGAATTATAACCATGGACGTGGTCAAGATCACCATTTTTCTTGCAAGATCACACTATCTT ACTATCTATTGATCCTGATCACAGTCATTGGTTTCACTTTGGTGCTGGTAGTTTATCTATATTAATGAAATTGAATTTCT TTTGGTGCTTTCCCCCAGCTAATCGAGTTGTGGAAGTAAATGAGATGTGGCGAGTACGGCAAAAAGAAAAAGAGCTGGAT GAACGGGTTAGAGGTACATCATCAGATAAAAGCAGTGGAGACAGAAGCCATAGGGATGATAAAACATCAAGAAGTTCCAT TGGTAATAGCACTAGAACATCTGCTTCATGCTCAAGTAAAAGACAATTTGAGATGGAGGTTAAAGACACATCAAAAGATA AAAATTCAAGTGACAGAAGCCACAGGGATAGTAAATTGTTAGGAAGAACCGGAAGACATGCTGTAATCGATGAAAGCACT AGTGCTTCTGCTTCATGCTTAAATAAAAGAGGACATGAGCATCCTCCAGAAGGTTTAAAGGATGAAGAGCTTGAGGAGTT TCTCCACTCAAGGTTTTACTTTTATGCATTCTGGTGTTTTTATATGCATGCATGCCTTAATATAATTCTCTCTCTCTCTC TATATTGAATTTAGAACTAAGGAAGCTCCATATTGGTGCAGGACCAAGCGAGGCAGAGGCGCTGTTGGTCCAAGAATGGA TGAGACTGGGCCTTACCTTCCTCCTCATACAGATGGGGAGCCTAGTACTAGTCCTGATGCAAGGGAACGCCGTCGGGTTA TTTACGGTCCGGAGATGCCTTCATCATTGAAGTTATATGAATCCTCTGAGGAGGAGACTGATGAAGACAGGCGGAGAAAG AGTAAAAAGTCTCGCTCTAGCTGCTCAGACAAGGAGCATTCTGAGAAGCGCAAGTCCAAGAAGAAATCTAAGCATAAGAA AAAGAAAAGGGACGAGAAAAGAAGTAAACATCATCATCGGTAATGCTGTTGTGTAATTCTATAATCTCTCACAGATGAAT GTTATAATTTGCAATGGATATGGAACTCATGTTTGTACTTTGTAACATCTGTAACCTCAAAATGCAATTCCTCTTGGAGA TATGAATTGTTTTGGCCATATGATGCAAGCAATTATTTTGCATTGTTTTATGGATTTCATTCCTATGGTGCAGAGTGCAG C

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0345500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCTGGAGAGTGAAAACAGACTAGCTGCTATGCTTATGAGGGAAGCAGCTGAGTTGCGGCGGCAGGCTGAAAAAGA AGGTGTTCTGGCTTATCTTAGTAAGCCTAATGTCCGGAATCGGCCAAATTCACGCTTCCTCACTGCTACTGTACTTGGGG TACAACAATCTAATCGAGTTGTGGAAGTAAATGAGATGTGGCGAGTACGGCAAAAAGAAAAAGAGCTGGATGAACGGGTT AGAGGTACATCATCAGATAAAAGCAGTGGAGACAGAAGCCATAGGGATGATAAAACATCAAGAAGTTCCATTGGTAATAG CACTAGAACATCTGCTTCATGCTCAAGTAAAAGACAATTTGAGATGGAGGTTAAAGACACATCAAAAGATAAAAATTCAA GTGACAGAAGCCACAGGGATAGTAAATTGTTAGGAAGAACCGGAAGACATGCTGTAATCGATGAAAGCACTAGTGCTTCT GCTTCATGCTTAAATAAAAGAGGACATGAGCATCCTCCAGAAGGTTTAAAGGATGAAGAGCTTGAGGAGTTTCTCCACTC AAGGACCAAGCGAGGCAGAGGCGCTGTTGGTCCAAGAATGGATGAGACTGGGCCTTACCTTCCTCCTCATACAGATGGGG AGCCTAGTACTAGTCCTGATGCAAGGGAACGCCGTCGGGTTATTTACGGTCCGGAGATGCCTTCATCATTGAAGTTATAT GAATCCTCTGAGGAGGAGACTGATGAAGACAGGCGGAGAAAGAGTAAAAAGTCTCGCTCTAGCTGCTCAGACAAGGAGCA TTCTGAGAAGCGCAAGTCCAAGAAGAAATCTAAGCATAAGAAAAAGAAAAGGGACGAGAAAAGAAGTAAACATCATCATC GGTAA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0345500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDLESENRLAAMLMREAAELRRQAEKEGVLAYLSKPNVRNRPNSRFLTATVLGVQQSNRVVEVNEMWRVRQKEKELDERV RGTSSDKSSGDRSHRDDKTSRSSIGNSTRTSASCSSKRQFEMEVKDTSKDKNSSDRSHRDSKLLGRTGRHAVIDESTSAS ASCLNKRGHEHPPEGLKDEELEEFLHSRTKRGRGAVGPRMDETGPYLPPHTDGEPSTSPDARERRRVIYGPEMPSSLKLY ESSEEETDEDRRRKSKKSRSSCSDKEHSEKRKSKKKSKHKKKKRDEKRSKHHHR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR34684 View details on PTHR34684 Search for proteins/transripts with this domain View external data on PTHR34684	1	293	293	6.3E-91	–
PANTHER	PTHR34684:SF1 View details on PTHR34684:SF1 Search for proteins/transripts with this domain View external data on PTHR34684:SF1	1	293	293	6.3E-91	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	3	23	21	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	73	294	222	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	73	102	30	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	103	118	16	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	119	149	31	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	167	197	31	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	239	270	32	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	271	294	24	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0345500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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