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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0346200 |
| Transcript ID | LotjaGi6g1v0346200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix loop helix (BHLH) DNA-binding family protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|G7IFB7|G7IFB7_MEDTR Symbiotic ammonium transporter; Found in the gene: LotjaGi6g1v0346200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65854809..65857929) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCAAATGATCTTTGACCAAGGCAATGAAAAATCTAACAAAGTGACTAAGGACAAATGAAAAAGAGGGACCGCATAGT GAAGATTTTGCAAACCCTTGATCAAGATTTCAATGTATAGTTGGTGAAGAACACCGCCAAAGTCCACACAATAGCAATTG GTGGGTGTGTTATTTATTTGTCAGCTTTTGGAATATAAAATTGCGTTAAGTATATTATCATTGATTGAAACATAGGCTTC TATTCTTGTATGTAAAAGCCAGTTCACATCAACAACCCGTGAGCATCATAATGCAACTCTTCTAAGTTGGGATACAGTGA GGTGGAGTGGACAAAAGGAATTACAACAACAAAATATATAAAGCTGAAGCAGCTAGGGAATCAGCAGCAACATTGAGAGC TGCAATCTACCTTAACCAGTAAGCTTCTTCTCCATCTTAAAACATTTGAATGCAAGTTTCCAAGATTTTTTCTCACTAAA TAATTGATCTAGATTTAGTGCATGTTTTGTATACACGGTAAAAACCACGGTGAGTCCAAAATCATGGGGTATAGTTGCAA ACATTAAAAGAAGTTGCTTCTCTTCATGGTGACTTGACTTCACCATAGTTTTCCACCTTTATCCAAACATGCAATAGGTG GGATATTGTGGTTTCTGTTTGTTGCTTTCTTCTTCAATCAATGTATCTAATCTTAATGGGCATTTAGCCAATATTGCTAT CAGCTATATGAAATCAAAGTAACAAAACTAATTAGCTTTTCCTTCTGACTTTTTTTCCAGGACATCATCTTCAACTGTTT TGGTAGCAGGAATATGCATATGGAGATTTCATCTTTACCTGAACAGGTAAGACATATATCTGTTGCAAAATTAGTCTTGC AAGTTGCAACCAAATTAATTGAATTTTTACTTTGCAAGTTGGAACCATTTATGATTTAAACAAGGCAAATAATTAATAAA TGAATGAAACATGGATATATTTGAATCTTTCTGCAGGCTAGATAGTTGATGACACATGTGTATGAAACTTCTGAAAGTTG AGTAGGGAAGGTTATATTTTCTGATTTTGATTTTGCAGGGGTTGATAGAGGATCCTAACTTCCTCCACCAGTGGCGCTTT GGCTCTATTGATCCCCCAAGCTTAACAGCTTCCGCTGCTTTTGGAGAGGCTTTGCAAAAACATTCATTCACTAATAATAG CCCAAACTTCAACCACAAAACTTCTACTGATACACAATATGCTTCCTGCCAAAATCTGATTTCATTTGCTGATTCAAGTC ATCACATGAATCAATTGGGACTAGTGAGGCCTAAAGAGGAGATGGAGAGTCCTAAAATTGATAACACTGCTCTCGCAAAC ATGTTGATCTCTCAAGGAGCCTTCATGAATCAAAACTATGCCTTCAAAGCTTGCCAGGAGGATAAAAAGATTGGGGCATG TCATAAACTTTCTCAACCTCATCATGAGCATGTAATTGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGAGGTTCATTG CTCTGTCAGCTCTTGTTCCGGGCCTGAAAAAGGTAGGAAACACGGTTAACAAGCTTTAATTTTGTTAATATCATTCTGAG TTTACTTGTCTGTCTGCCACAATCTTAGAATTTGGATTAGGCCTAATTCTATCCCAAAAGATAGCTTAGAAATGAAGATT GTTGTACAATTTATAAGAACTATTTTACTCATATCTCTAGTCAGTGTGAAACTGCTCAACACACAATGTGTATTTCTAAA CTTTTCATTGGAAATACAATGGTTTCATTTTTTTGAACTTCCTACTAACAGATGGACAAAGCTTCTGTTCTTGGAGAAGC TATCAAGTACTTGAAGCAAATGCAAGAAAAGGTGAGTGCTCTAGAGGAGGAGCAGAAGCGGAAGAAAACTGTGGAATCTG TGGTGATTCTGAAGAAATCTCTATGTAATGATGCTGAAGACACTTCTTCAGACAATGGTGGTGAATTTGATGACACACTG CCTGAAATTGAAGCACGATTCTGTGAAAGAAATGTCCTCATAAGGCTGCACTGTCTGAAGAATAAAGGAATTATAGAGAA AACAATCAGTGAGATTGAGAAGTTCCATTTAAAAGTTATCAATAGCAGTGCCTTGACATTTGGGAGCTTTGCCCTTGATA TTACCATTATTGCTCAGGTAATTCCTTTAACTAAATGAGTTAATATATTCATTGTTTTTCATTACTTTCTTCCAATGAGT ATAATTTTATTTCAATAAATTAAGGAATTGTTTCTGCATTTCACAGATGGATATGGGATTTTGCATGACAGGAAAGGATC TTGTGAGAAACCTACGTTCAGCTCTATCATCTCTCATGTGAAGTTGTTTGTTATTTTGTTCACCAGTCCACTACCCCCAT TATATAGAAGAATCAATCAATCTATCTTCTCCAACAGAAGAATAGGAGTACAATCAATCAAATAAAGCAGTTCAAGTTGA AGTTTTTCAGTGATAATTCTGTTTGCAATGCCTGTGATGTCAGCCATCTCAATCAAGCATGTTTGCTCTGATCAATGTTC ATTTTGCGGGAGGGTTTTTTCTTTTTGCATGCTCAACTTGTTGACCATGTTACTATCACCTTGATCCTTGAGTGATACCC TCCTGTTTCTAGAATGTGGAGCTTCTTATAGGCTTTTTTTGGGCAGGAATGAAAAGTTAAACTTTTCCATATCTTGCTTT TTATTTTTGACAAACAGGCCTTTGTTGTTGAGTAACCTGCTACTTTCCATGTGTTTTGCTTTGAAAAAAAGTGGTCAGGA CTCTTGTACTTGTTTTTATTTGGAGCAGTATCTGCTTGTAAAAGTTTGGTTAACTGTTACTAATAATAGAATCATTTTGT ACCTTCATATAGTGGAACAATATTTGCATAAAACCCGAAAATAACCAATATATTTTTATTATTCATGAGGTGAATGATTT TTTGGTGCTTCATGAGGTGAATGATGGTGATAATAATACGAGAATATCAATATCTTAGCAATTTATTATGAGCAGTACAC TTTTTTAAAACACATTCTCTATTGTAGAGAATTTCCGTCGCAAATTCCGTCACAGATAAACAAGCAACCAGTTTTGTTGG A
CDS sequence (LotjaGi6g1v0346200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAAGCTTCTGTTCTTGGAGAAGCTATCAAGTACTTGAAGCAAATGCAAGAAAAGGTGAGTGCTCTAGAGGAGGA GCAGAAGCGGAAGAAAACTGTGGAATCTGTGGTGATTCTGAAGAAATCTCTATGTAATGATGCTGAAGACACTTCTTCAG ACAATGGTGGTGAATTTGATGACACACTGCCTGAAATTGAAGCACGATTCTGTGAAAGAAATGTCCTCATAAGGCTGCAC TGTCTGAAGAATAAAGGAATTATAGAGAAAACAATCAGTGAGATTGAGAAGTTCCATTTAAAAGTTATCAATAGCAGTGC CTTGACATTTGGGAGCTTTGCCCTTGATATTACCATTATTGCTCAGATGGATATGGGATTTTGCATGACAGGAAAGGATC TTGTGAGAAACCTACGTTCAGCTCTATCATCTCTCATGTGA
Protein sequence (LotjaGi6g1v0346200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKASVLGEAIKYLKQMQEKVSALEEEQKRKKTVESVVILKKSLCNDAEDTSSDNGGEFDDTLPEIEARFCERNVLIRLH CLKNKGIIEKTISEIEKFHLKVINSSALTFGSFALDITIIAQMDMGFCMTGKDLVRNLRSALSSLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 146 | 146 | 5.0E-86 | – | |
| PANTHER | 1 | 146 | 146 | 5.0E-86 | – | |
| Gene3D | 1 | 47 | 47 | 2.4E-5 | ||
| Coils | 7 | 34 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0346200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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