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LotjaGi6g1v0352000.1

Overview

Field Value
Gene ID LotjaGi6g1v0352000
Transcript ID LotjaGi6g1v0352000.1
Lotus japonicus genome version Gifu v1.2
Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT5G38920.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|B3ETM6|SYV_AMOA5 Valine--tRNA ligase; TrEMBL-Plants: tr|A0A068V1I5|A0A068V1I5_COFCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0352000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:66418873..66419407) extracted from Lotus japonicus Gifu genome v1.2.

CCAAAAAAATCCTCCCCTTGAACTTCCTCCATTAATGTTATCCTATATGCCTCCCTTGGTGGTGATTTTCTTGCTGGTTT CGGTATGGTGGCTAGGGACGAGGATGGCGAGATCTTGGCGGCGGCTTCACACTACCCGACGGCTGCTACTTCAGCCACGA TGGCAGAGGCGTTTTGTCTCCGTTGGGCCATGGAGCTTTCTTCACAGTTAGGATTCAGGGGGGTGCAGTTTGAGACTGAT TGTCTTCAGCTTTTCCATGCTTGGAAGAAGGGTGTTGGTCATTCTCCTTTATTTTCTTTGCTTCAGGATTGTAAGGCTTT TGTTCGTTTGTTTGATTGTGTTGAGTTTACTTTTACTCGTAGACAGGGCAATACTTGTGCTGATTTTATGGCTCGGAACA CCTCTACCCTTTCAAATACTGTTTGGGTGGAGGAGGGTCCCCCGGGTTTATGTAGCCTTTTACAGGCGGATCTTTTGGCT TCTATGCCGGTTATGATTTAATATATGTTATGCCACGTTCAAAAAAAAAAAAAAC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0352000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGCTAGGGACGAGGATGGCGAGATCTTGGCGGCGGCTTCACACTACCCGACGGCTGCTACTTCAGCCACGATGGC AGAGGCGTTTTGTCTCCGTTGGGCCATGGAGCTTTCTTCACAGTTAGGATTCAGGGGGGTGCAGTTTGAGACTGATTGTC TTCAGCTTTTCCATGCTTGGAAGAAGGGTGTTGGTCATTCTCCTTTATTTTCTTTGCTTCAGGATTGTAAGGCTTTTGTT CGTTTGTTTGATTGTGTTGAGTTTACTTTTACTCGTAGACAGGGCAATACTTGTGCTGATTTTATGGCTCGGAACACCTC TACCCTTTCAAATACTGTTTGGGTGGAGGAGGGTCCCCCGGGTTTATGTAGCCTTTTACAGGCGGATCTTTTGGCTTCTA TGCCGGTTATGATTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0352000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVARDEDGEILAAASHYPTAATSATMAEAFCLRWAMELSSQLGFRGVQFETDCLQLFHAWKKGVGHSPLFSLLQDCKAFV RLFDCVEFTFTRRQGNTCADFMARNTSTLSNTVWVEEGPPGLCSLLQADLLASMPVMI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46736:SF3
1 129 129 1.3E-23 –
PANTHER
PTHR46736
1 129 129 1.3E-23 –
Pfam
PF13456
1 104 104 1.0E-17
IPR002156
Gene3D
G3DSA:3.30.420.10
1 111 111 2.6E-10
IPR036397
CDD
cd06222
2 104 103 1.17647E-20 –
SUPERFAMILY
SSF53098
2 105 104 4.05E-8
IPR012337

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004523
Molecular function RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0352000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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