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LotjaGi6g1v0355000.2

Overview

Field	Value
Gene ID	LotjaGi6g1v0355000
Transcript ID	LotjaGi6g1v0355000.2
Related isoforms 2	LotjaGi6g1v0355000.1 LotjaGi6g1v0355000.3
Lotus japonicus genome version	Gifu v1.2
Description	UDP-glycosyltransferase; TAIR: AT2G22590.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp\|D4Q9Z5\|SGT3_SOYBN Soyasaponin III rhamnosyltransferase; TrEMBL-Plants: tr\|A0A1J7FU03\|A0A1J7FU03_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0355000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:66683194..66685781) extracted from Lotus japonicus Gifu genome v1.2.

AAACCAAGTCAATTCATGGCTGCTCCAAGGACTTCTCATTTATCAGCCATTCATCACTTGTTGAGGTATCTAAAAGGAAC TACTTGCTCCAACCATCTCTTAATTATTTGTCTCATTTCATTAAAGAAATAAAAATCTCTAATTACTTTATAATAAAGCT AGCAACTAGTGGATCGTGGCAAAGTTCTCTATTTTGATCCCATGTTCCTAGAATAAAAATACTGGAAGCGTGCCAAGCAT GGTGTTAATTTAATCATTGAATCCCCTTGGACCTTCCTACTTATATCCTTTCCTCAGTGCAGGTAGAAACCAAATCCAAG TGAAAGGGAAAGAAAGAAACAATCTCATGGATTCAACTGCTCCACTTCCATTTAGTGGCAATGGCGAAGATAAACCTCTT CATATAGTCATGATCCCATGGCTCGCCATGGGTCACATAACCCCATACTTTGCGCTGGCCAAGGTTCTTGCTCAAAAGGG TCACTTCATCACATTCATAAACAGCCCAAAGAACATTGATCGCATGCCCAAACCCCCAAAAAGCCTTGAACCATTCATCA ACTTGGTGAGGTTGCCCTTGCCACCCATTGAGCATCTCCCAGAAGGTGCAGAGAGCACCATGGACATCCCCACTAACAAG GGATATTACCTCAAGTTGGCCTATGAAGGCCTCCAAGATGCTGTTGCTGAGATACTTCAAACTTCAAAGCCTGATTGGGT TCTATATGATTTTGCAGCTGACTGGTTGCCACCAACAGCTAAGAGCCTCAACATCCCTTGTGCCCATTACAACATAACCC CAGCTTGGAGCAAATGCTTCTTTGATCCACCAAAGGATCAGGTAAAGTCATATTTCAATCTTGAAGACATGTGTAGCCCA CCCAAGTGGGTTCCTTTCCACACAACCATGAGTCTAAGGCCTTATGAGATCATTAGAGCATTTGCAGCTGTCAAAGATGA GTCTACAGGACGATCAATTAATTATGATCCCAACAAAGCATATTCCAGCGGTGACTTGTTTCTTCTCAGAAGCTCCAGAG AACTTGAAGGAGAATGGTTAGATTATGTTGCTGATAGGTACAAGATGCATGTGGTTCCTGTTGGCTTGCTTCCACCATCC TTGCAAATAAGAGATGTTGAAGAGGAAGACAAACACCCCGACTGGGTGAAAATCAAAGCCTGGTTAGACACACAAGAACC TTCATCTGTGGTGTTCATAGGATTTGGGAGTGAGTTGAAGCTGAGCCAGCAAGACCTCACTGAGTTGGCCCATGGCATTG AGCTTTCTGGGTTGCCTTTCTTCTGGGCTTTGAAGTACCTGAAAGATGGATCACTTGAGTTACCTGAGGGGTTTGAGGAC AGAACCAAGGATCGTGGGATTGTTTGGAAAACATGGGCACCCCAGCCGAAGATCTTAGCTCATGGGGTCATTGGGGGATG CATGAGTCACTCGGCTGCAGGTTCTGTCATTGAGATGGTTAATTTTGGGCACGTTCTTGTGACCCTGCCATATTATCTGG ACCAGTGTCTGTTTTCAAGAGCATTAGAAGAAAAGAAAGTGGGAATAGAGGTACCAAGGAACGAGCAAGATGGTTCCTTT ACTAGGGAGTCGGTGGCGAAGACATTGAGGTTAGCAATAGTTGATGAGGAAGGGAGTGTCTACAGGAAGAATGCCAAAGA GATGGGCAATGTTTTCAGTTCCAAAGTTCTTCATGATCAATACATTGAAGATTGCATTGCTGCTCTTCAAAAATATAGGC TTCATTCCAATAGATAAGCAGTTCTTCTTTTAATTTCTTTCCTTTCTTCTATGATCTTTGTTTAGTAATAAAGGTCAATA TAGCACCTACGAAAATTCGACTTTATTAAGATTACATTGTCCGCAAAAGTTAAGAATTTATGTTGCAACTATAAAGGGCA CTAATGATAACTGACCAGGTATGACAAAGGAAATATTCCAATAGACTGTACCTTACCATATAAATATCCAATTTGGAAGT GTCTTGATGGGACCTATTCATGTGGTGCAAGCACTGCCAACAAAAGATGAGATTTAAGAGAACATAATAGAGGCATCTCA ACGAATGATCCGGTGAGTGGAAGTGATGGACATGATATTATTCCAAAGAAGAATGACAACAACTATTAGGCATGAACTAT GGACATCATGTTCATTTCATTTAATGTATCATGTTGCTGACAGAAAATTCAGCTCATTCCAACCCTACATATCAAACTTT AAAATGCAATTACACCACTGTCTACTATATGACCTACTCATATATAAGGTGTTGTCCAAAAGAGTCAAGTTCATTCAAAT CGCCATACATATAATTTGACATGTTCAAGCTTCAAGAACAATCATGCAAAGTAGCCATTTGTAAACAATGGGAGGGAAAA TTCTGCTATATTTTCTATCAGCAACTGTACGCATTGGTATGACAATAGACATAACAAATTTCACTTTGTTCTAATTTACA AACTAAACAAAACCACTATATAATACCATGCTCTGATGTGTTGTTAATTGACACCTATATTTTGAAATAATGCAGGAATG GTAGTAGTTATGTAGCATTGACATTTTA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0355000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATTCAACTGCTCCACTTCCATTTAGTGGCAATGGCGAAGATAAACCTCTTCATATAGTCATGATCCCATGGCTCGC CATGGGTCACATAACCCCATACTTTGCGCTGGCCAAGGTTCTTGCTCAAAAGGGTCACTTCATCACATTCATAAACAGCC CAAAGAACATTGATCGCATGCCCAAACCCCCAAAAAGCCTTGAACCATTCATCAACTTGGTGAGGTTGCCCTTGCCACCC ATTGAGCATCTCCCAGAAGGTGCAGAGAGCACCATGGACATCCCCACTAACAAGGGATATTACCTCAAGTTGGCCTATGA AGGCCTCCAAGATGCTGTTGCTGAGATACTTCAAACTTCAAAGCCTGATTGGGTTCTATATGATTTTGCAGCTGACTGGT TGCCACCAACAGCTAAGAGCCTCAACATCCCTTGTGCCCATTACAACATAACCCCAGCTTGGAGCAAATGCTTCTTTGAT CCACCAAAGGATCAGGTAAAGTCATATTTCAATCTTGAAGACATGTGTAGCCCACCCAAGTGGGTTCCTTTCCACACAAC CATGAGTCTAAGGCCTTATGAGATCATTAGAGCATTTGCAGCTGTCAAAGATGAGTCTACAGGACGATCAATTAATTATG ATCCCAACAAAGCATATTCCAGCGGTGACTTGTTTCTTCTCAGAAGCTCCAGAGAACTTGAAGGAGAATGGTTAGATTAT GTTGCTGATAGGTACAAGATGCATGTGGTTCCTGTTGGCTTGCTTCCACCATCCTTGCAAATAAGAGATGTTGAAGAGGA AGACAAACACCCCGACTGGGTGAAAATCAAAGCCTGGTTAGACACACAAGAACCTTCATCTGTGGTGTTCATAGGATTTG GGAGTGAGTTGAAGCTGAGCCAGCAAGACCTCACTGAGTTGGCCCATGGCATTGAGCTTTCTGGGTTGCCTTTCTTCTGG GCTTTGAAGTACCTGAAAGATGGATCACTTGAGTTACCTGAGGGGTTTGAGGACAGAACCAAGGATCGTGGGATTGTTTG GAAAACATGGGCACCCCAGCCGAAGATCTTAGCTCATGGGGTCATTGGGGGATGCATGAGTCACTCGGCTGCAGGTTCTG TCATTGAGATGGTTAATTTTGGGCACGTTCTTGTGACCCTGCCATATTATCTGGACCAGTGTCTGTTTTCAAGAGCATTA GAAGAAAAGAAAGTGGGAATAGAGGTACCAAGGAACGAGCAAGATGGTTCCTTTACTAGGGAGTCGGTGGCGAAGACATT GAGGTTAGCAATAGTTGATGAGGAAGGGAGTGTCTACAGGAAGAATGCCAAAGAGATGGGCAATGTTTTCAGTTCCAAAG TTCTTCATGATCAATACATTGAAGATTGCATTGCTGCTCTTCAAAAATATAGGCTTCATTCCAATAGATAA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0355000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSTAPLPFSGNGEDKPLHIVMIPWLAMGHITPYFALAKVLAQKGHFITFINSPKNIDRMPKPPKSLEPFINLVRLPLPP IEHLPEGAESTMDIPTNKGYYLKLAYEGLQDAVAEILQTSKPDWVLYDFAADWLPPTAKSLNIPCAHYNITPAWSKCFFD PPKDQVKSYFNLEDMCSPPKWVPFHTTMSLRPYEIIRAFAAVKDESTGRSINYDPNKAYSSGDLFLLRSSRELEGEWLDY VADRYKMHVVPVGLLPPSLQIRDVEEEDKHPDWVKIKAWLDTQEPSSVVFIGFGSELKLSQQDLTELAHGIELSGLPFFW ALKYLKDGSLELPEGFEDRTKDRGIVWKTWAPQPKILAHGVIGGCMSHSAAGSVIEMVNFGHVLVTLPYYLDQCLFSRAL EEKKVGIEVPRNEQDGSFTRESVAKTLRLAIVDEEGSVYRKNAKEMGNVFSSKVLHDQYIEDCIAALQKYRLHSNR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	13	279	267	1.7E-40	–
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	16	454	439	2.93E-90	–
CDD	cd03784 View details on cd03784 Search for proteins/transripts with this domain View external data on cd03784	18	446	429	9.84033E-60	–
PANTHER	PTHR11926 View details on PTHR11926 Search for proteins/transripts with this domain View external data on PTHR11926	186	395	210	5.5E-14	–
Pfam	PF00201 View details on PF00201 Search for proteins/transripts with this domain View external data on PF00201	251	449	199	1.8E-9	IPR002213 Show description in modal box View details on IPR002213 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	280	453	174	7.9E-46	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016758 View details of GO:0016758 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016757

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0355000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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