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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0359500 |
| Transcript ID | LotjaGi6g1v0359500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G10780.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9SAC4|FB2_ARATH F-box protein At1g10780; TrEMBL-Plants: tr|I1MDP3|I1MDP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0359500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67112316..67115047) extracted from Lotus japonicus Gifu genome v1.2.
CTGAATTCACAAAAGAAAAAAAAATGGTTGTGTTGTTTTGTGTTGTGTGTCTGTGATGGAATCTGTTTGTTTAAAGTTTA AACGGTCCCAAAATTTGAAATAGCTCAAAAACGAAAGCGGGCTAATTTTCAGTGCACCCTCCTCCTCCAAAATTTGAATT CCCTTTTTAAGTCAACCAAACACAATACAAATTCACCACCCAAAAACCTCATCTCAAATCCCAGCCAGATCTTCATTCAT TCTCTTCGGATTTCAATATGTGTAAGCTTTTTCTCTAACTTTTCAATACATATAATAAATCTATAATATAAGGCAGGGTT TAAAGCTAATTAAGCAAACAGTTTAACTAGTGATAGCACAGATGAATTGAGGTTTTTAGATTCTGCTAATATTTGTGTTT GATTTGACGCCTCCAATTTTTCTTCATGAGTGATTAATGTCTTCATTGTTTCCTCTAGTAGTCCTTGTTCATAGTGCTAA TTTGAAAAGATGCTCATGAATCTATCTACCTGCATATATACTGATAATTAGCTATTTTCATTACTGTCCTCAGCCATGGA GTATGTCCCAGATGTCATACTTCAATGCATCTTGTCCCATATCAGTAATGCTCGCGATGTGGCAGCTTGCAACTGTGTTT CTAAGAGATGGAAGGACTCAATGGCTTATGTTAGAAGCCTCTACTTTCCTCGCAACTCGTTTGATAGCTATTCTGCCGAT GAAAGTCCTGATGATGTTGTGAAAAGAATGGTATCGACAGTTGTGCAATTGGAAGCGCTAGTTGTATACCCCCCATTCTC CCCTCGTGGTCTTGCTTCATGGCTATCACTTGTAGGTCTATCTCTTTCCCGGCTCGAGCTTCGAATGGACAACCTTGCTG ACAATCAGGCCTCCTGTGAAAGCCCTTCAAAATTGGATTGCATTGGTGCAGCAAGGAATTTGGAGTCTCTAAAACTTTGG GGTGTGTTGATGATACATTCCCCAAAATGGGATGTCTTCCAAAATCTTAGGACCCTTGAAATAGTTGGTGCAAGATTGGA GGATTCTGTATTGAATGTGGTGCTTCAGTCATGTCCATACCTGACAAGGTTGTTACTGCTTGGATGTGAGGGGATTAGAT CAATCTCAATCGACCTTCCGTATTTAGAGCAATGTAAGCTGGATTTTTATGGTTTGGGGAACTGTTCACTTTCGCTAACT TCCCCAAAGATTGAATCTCTTGAGGTACAAGGCTGTAGTTGGATTAGGGTCCCTGAAACCAAGCATTTGAAGAATCTTAC AATATCCAATAGTGCAGGTAGTTGAATGTCTGAATTGACTCCTGCCCTCATATATTTCTTGTTGCCATGTTTTTCTTGTT GTCAAGCAACCCTGCCAAAGTAATTTGTCTTATTTGATTGTTAGCTTAATTTTCTTTGTTAATTGTTTCCAGGGAGAGTA TACAACATTGATTTCGGAAACCTTTCAGCTCTGGAGTTCCTGTCTATGAGGGGGATCCAGTGGTGCTGGGATGCAATATG CAAAATGCTGAAACTGGCAAGTGAGGTGAAGCATCTTTATATGAAGGTTGAATTCACTGGGGACTATGAGGCTCTTCAAG CCTTTCCAGAGATTGATTTTGTTGAGTTTTTCAACAGCCATCCCAAGCTGCGCAAATTTGATGTCCATGGAGCCATGTTT GCAGCACTATGCCAAAGGAACAGTCTGAAACATGTAATTCAACATGATTTTGATATTACAGGTTTGATTCATGGTGTCCT ATAATATCCTATCTGACAAAGATACTCATTCCCTTTACAGGTGGATCCAGGATTTGTGATTCCATGTTTAGAGGAGGTTG TGATCACAGTGAGATCACCACTGAAGGCTGAACAAAAAATGAGTACTCTAGAGTCCTTGCTGAAGTATGGGAAGAATCTA AGGACCATGGTTATCAAGATTCTTCAGATGAAGAGCTCTGAGAGCAGCGCTGATGATTTTTTTGATGACATTTGCCGATT TAGATACATGAACTATGGGATAGTTCGAATAGAATAAAGCTCAGAACAGGCTATTATTTCTTGATGCGTTCTAATACAGG ACATTTCATGTTGATTTCCAGTTTCAGCTGGACTGCTGAGCTGATGATGACTCAATGTTTTGAGGAGCTAATTTGTTGTT CCGAACATCATTTAAAAATTGATTTTCTTTTTTAGCCAATTTAGAGAATGTGTGTTTGTTTAAATGTTTGATGAATGTGA ACATACGTTTGCCCTCACATCCTTTGGCTTTTTAGCCTCAAAATATGTGCAAATGGATTTTGAGGAGAGTGTTGACAGAA AAACTGTTAGAGCCAGAATGGAATCAGTTTTCTTATCTAGTTTTCTATTTCTTGTTTTCAATAGTTTCAAACACAACACA AGAGTCATCACTTTTAAGTGAATATAATTTTTCTTTTTTAATCATTGCTCCAACTTCATAACTCATTCGGATATACCAGA ATTGCAATTTGTGTAGCTTTAGAGTGGCCAATATCAATGAAAATGTAGCATGAGCAACACCAAATGAAGTCAAGCATGCA TAAGTGGGATCACATAGAGGAGGTAGATGGTGCGGAAATATCTGAAGGGCAACAGAGTGGCGGAAGGGGAGGAGTGGCGG CAACCGAGTCGTCTAGAGCAAGCTGGTAGAGAGGCCTTGAGTTCAGATATGGGAGGGGAAGGGTGGTTGCGACAGCTAGT CTCAGTCTACTT
CDS sequence (LotjaGi6g1v0359500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATGGAGTATGTCCCAGATGTCATACTTCAATGCATCTTGTCCCATATCAGTAATGCTCGCGATGTGGCAGCTTG CAACTGTGTTTCTAAGAGATGGAAGGACTCAATGGCTTATGTTAGAAGCCTCTACTTTCCTCGCAACTCGTTTGATAGCT ATTCTGCCGATGAAAGTCCTGATGATGTTGTGAAAAGAATGGTATCGACAGTTGTGCAATTGGAAGCGCTAGTTGTATAC CCCCCATTCTCCCCTCGTGGTCTTGCTTCATGGCTATCACTTGTAGGTCTATCTCTTTCCCGGCTCGAGCTTCGAATGGA CAACCTTGCTGACAATCAGGCCTCCTGTGAAAGCCCTTCAAAATTGGATTGCATTGGTGCAGCAAGGAATTTGGAGTCTC TAAAACTTTGGGGTGTGTTGATGATACATTCCCCAAAATGGGATGTCTTCCAAAATCTTAGGACCCTTGAAATAGTTGGT GCAAGATTGGAGGATTCTGTATTGAATGTGGTGCTTCAGTCATGTCCATACCTGACAAGGTTGTTACTGCTTGGATGTGA GGGGATTAGATCAATCTCAATCGACCTTCCGTATTTAGAGCAATGTAAGCTGGATTTTTATGGTTTGGGGAACTGTTCAC TTTCGCTAACTTCCCCAAAGATTGAATCTCTTGAGGTACAAGGCTGTAGTTGGATTAGGGTCCCTGAAACCAAGCATTTG AAGAATCTTACAATATCCAATAGTGCAGGGAGAGTATACAACATTGATTTCGGAAACCTTTCAGCTCTGGAGTTCCTGTC TATGAGGGGGATCCAGTGGTGCTGGGATGCAATATGCAAAATGCTGAAACTGGCAAGTGAGGTGAAGCATCTTTATATGA AGGTTGAATTCACTGGGGACTATGAGGCTCTTCAAGCCTTTCCAGAGATTGATTTTGTTGAGTTTTTCAACAGCCATCCC AAGCTGCGCAAATTTGATGTCCATGGAGCCATGTTTGCAGCACTATGCCAAAGGAACAGTCTGAAACATGTGGATCCAGG ATTTGTGATTCCATGTTTAGAGGAGGTTGTGATCACAGTGAGATCACCACTGAAGGCTGAACAAAAAATGAGTACTCTAG AGTCCTTGCTGAAGTATGGGAAGAATCTAAGGACCATGGTTATCAAGATTCTTCAGATGAAGAGCTCTGAGAGCAGCGCT GATGATTTTTTTGATGACATTTGCCGATTTAGATACATGAACTATGGGATAGTTCGAATAGAATAA
Protein sequence (LotjaGi6g1v0359500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMEYVPDVILQCILSHISNARDVAACNCVSKRWKDSMAYVRSLYFPRNSFDSYSADESPDDVVKRMVSTVVQLEALVVY PPFSPRGLASWLSLVGLSLSRLELRMDNLADNQASCESPSKLDCIGAARNLESLKLWGVLMIHSPKWDVFQNLRTLEIVG ARLEDSVLNVVLQSCPYLTRLLLLGCEGIRSISIDLPYLEQCKLDFYGLGNCSLSLTSPKIESLEVQGCSWIRVPETKHL KNLTISNSAGRVYNIDFGNLSALEFLSMRGIQWCWDAICKMLKLASEVKHLYMKVEFTGDYEALQAFPEIDFVEFFNSHP KLRKFDVHGAMFAALCQRNSLKHVDPGFVIPCLEEVVITVRSPLKAEQKMSTLESLLKYGKNLRTMVIKILQMKSSESSA DDFFDDICRFRYMNYGIVRIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 296 | 296 | 2.5E-23 | ||
| PANTHER | 3 | 420 | 418 | 3.8E-188 | – | |
| PANTHER | 3 | 420 | 418 | 3.8E-188 | – | |
| SUPERFAMILY | 5 | 48 | 44 | 9.81E-6 | ||
| SUPERFAMILY | 85 | 301 | 217 | 8.63E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0359500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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