Transcript — View — Lotus Base

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LotjaGi6g1v0362900.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0362900
Transcript ID	LotjaGi6g1v0362900.1
Lotus japonicus genome version	Gifu v1.2
Description	cotton fiber protein; TAIR: AT4G14380.1 cotton fiber protein; Swiss-Prot: sp\|Q08234\|YO075_YEAST Uncharacterized ABC transporter ATP-binding protein/permease YOL075C; TrEMBL-Plants: tr\|I3SEC5\|I3SEC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0362900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:67449177..67449875) extracted from Lotus japonicus Gifu genome v1.2.

AAAATCAAACCAATCCCTTTATATGGTATTCCAAACCTACCAACCAAAAGCCATTGCTTAATTGCTGAGATGAGGCTAGG AAAGAAGGTTCAGCCTGCTAAGAGAGCTTGGAAGAAGTTCTCCACAAAACTCAAACTCAATAATATTCCTAAAGCCATCA AAGCCACCTTTAAACACATCACTCGTAGAACACCACATGCTGCTTCTTCTAACCACCATGTTGATTTGATTGCCAACGAG GGAGGGGAATCAAGCATGGAGGAGGACATAGAAACTATTGAGGATGCATGGAAGATTGTAGTTGCTAAGTCATCTCATGA CGATCCGATGCAGGACGAGGACGTGGATCAGAAAGCAGAGGAGTTCATCAGCAAGTTTTATCAAGGTATCAGGAAAGAGA TGTCTCTGCTAGAGTGGAATCCCCGCAGATGATCATGCCTACTATCTCTTTTCCTTTTCATTCATAGTAACATGTGTGTG GAACATTTGCTTTTCTTAATGTTCTTCATTTTTGGTTTTGTTAGGAATTATTTTTCCTTTCATCGATCCTGTTTTAAATT TAATTGTTCATCATCTCATAGCTCTAAGGAAACATGTGATCGATCAATTCAATTGTACAGGTGTTTTGTTTAACGAATTA AGAAAATGAAATCATTATTCACAACCGACGTATCTTCAAAATGTAGAGCTACAAATAAG

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0362900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGCTAGGAAAGAAGGTTCAGCCTGCTAAGAGAGCTTGGAAGAAGTTCTCCACAAAACTCAAACTCAATAATATTCC TAAAGCCATCAAAGCCACCTTTAAACACATCACTCGTAGAACACCACATGCTGCTTCTTCTAACCACCATGTTGATTTGA TTGCCAACGAGGGAGGGGAATCAAGCATGGAGGAGGACATAGAAACTATTGAGGATGCATGGAAGATTGTAGTTGCTAAG TCATCTCATGACGATCCGATGCAGGACGAGGACGTGGATCAGAAAGCAGAGGAGTTCATCAGCAAGTTTTATCAAGGTAT CAGGAAAGAGATGTCTCTGCTAGAGTGGAATCCCCGCAGATGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0362900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRLGKKVQPAKRAWKKFSTKLKLNNIPKAIKATFKHITRRTPHAASSNHHVDLIANEGGESSMEEDIETIEDAWKIVVAK SSHDDPMQDEDVDQKAEEFISKFYQGIRKEMSLLEWNPRR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33098 View details on PTHR33098 Search for proteins/transripts with this domain View external data on PTHR33098	55	117	63	5.6E-20	–
PANTHER	PTHR33098:SF55 View details on PTHR33098:SF55 Search for proteins/transripts with this domain View external data on PTHR33098:SF55	55	117	63	5.6E-20	–
Pfam	PF05553 View details on PF05553 Search for proteins/transripts with this domain View external data on PF05553	89	108	20	2.5E-6	IPR008480 Show description in modal box View details on IPR008480 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0362900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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