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Lj0g3v0338719.1

Overview

Field Value
Gene ID Lj0g3v0338719
Transcript ID Lj0g3v0338719.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Pierisin [Medicago truncatula] gi|357514961|ref|XP_003627769.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 4 4 – –
Phobius
SIGNAL_PEPTIDE
1 22 22 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
5 15 11 – –
TMHMM
TMhelix
5 22 18 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
16 22 7 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
23 363 341 – –
SUPERFAMILY
SSF50923
119 323 205 6.70E-20
IPR000585
Gene3D
G3DSA:2.110.10.10
122 202 81 2.70E-04
IPR000585
ProSiteProfiles
PS51642
124 177 54 7.602
IPR018487
SMART
SM00120
127 176 50 18
IPR018487
ProSiteProfiles
PS51642
184 235 52 6.964
IPR018487
Gene3D
G3DSA:2.110.10.10
203 332 130 2.30E-14
IPR000585
ProSiteProfiles
PS51642
241 287 47 10.635
IPR018487
Pfam
PF00045
244 292 49 1.90E-06
IPR018487
SMART
SM00120
244 286 43 1.30E-05
IPR018487
ProSiteProfiles
PS51642
293 348 56 9.367
IPR018487
SMART
SM00120
296 350 55 4.8
IPR018487

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0338719.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0338719.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.