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Lj1g3v4538830.1

Overview

Field Value
Gene ID Lj1g3v4538830
Transcript ID Lj1g3v4538830.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description RNI-like superfamily protein [Arabidopsis thaliana] gi|42569177|ref|NP_179611.2|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24106:SF146
56 129 74 2.60E-177 –
PANTHER
PTHR24106
56 129 74 2.60E-177 –
SUPERFAMILY
SSF52047
158 255 98 3.66E-38 –
Gene3D
G3DSA:3.80.10.10
194 252 59 2.40E-39
IPR032675
PANTHER
PTHR24106
194 253 60 2.60E-177 –
PANTHER
PTHR24106:SF146
194 253 60 2.60E-177 –
Gene3D
G3DSA:3.80.10.10
289 573 285 2.40E-39
IPR032675
SUPERFAMILY
SSF52047
291 575 285 3.66E-38 –
PANTHER
PTHR24106
357 574 218 2.60E-177 –
PANTHER
PTHR24106:SF146
357 574 218 2.60E-177 –
SMART
SM00368
359 386 28 1.9 –
Pfam
PF13516
360 380 21 0.69
IPR001611
SMART
SM00368
387 414 28 4.8 –
Pfam
PF13516
387 406 20 0.0083
IPR001611
SMART
SM00368
419 446 28 38 –
SMART
SM00368
448 475 28 90 –
SMART
SM00368
502 529 28 130 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj1g3v4538830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4538830.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.