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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1022350 |
| Transcript ID | Lj2g3v1022350.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Glycine max] gi|356550937|ref|XP_003543838.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 409 | 409 | 0 | – | |
| PANTHER | 1 | 409 | 409 | 0 | – | |
| MobiDBLite | 1 | 52 | 52 | – | – | |
| Gene3D | 51 | 122 | 72 | 8.10E-22 | ||
| SUPERFAMILY | 51 | 122 | 72 | 3.92E-23 | ||
| ProSiteProfiles | 53 | 123 | 71 | 16.583 | ||
| Pfam | 76 | 120 | 45 | 2.20E-13 | ||
| SUPERFAMILY | 134 | 206 | 73 | 5.62E-25 | ||
| Gene3D | 136 | 206 | 71 | 2.50E-27 | ||
| ProSiteProfiles | 137 | 207 | 71 | 19.377 | ||
| Pfam | 160 | 204 | 45 | 2.20E-18 | ||
| MobiDBLite | 208 | 311 | 104 | – | – | |
| ProSiteProfiles | 332 | 405 | 74 | 12.137 | ||
| SUPERFAMILY | 340 | 405 | 66 | 4.32E-16 | ||
| Gene3D | 341 | 402 | 62 | 6.80E-14 | ||
| Pfam | 359 | 402 | 44 | 6.00E-09 | ||
| MobiDBLite | 426 | 450 | 25 | – | – | |
| Coils | 430 | 450 | 21 | – | – | |
| PANTHER | 440 | 754 | 315 | 0 | – | |
| PANTHER | 440 | 754 | 315 | 0 | – | |
| SMART | 469 | 569 | 101 | 3.80E-53 | ||
| Pfam | 471 | 563 | 93 | 3.70E-34 | ||
| Coils | 542 | 562 | 21 | – | – | |
| MobiDBLite | 746 | 821 | 76 | – | – | |
| MobiDBLite | 879 | 899 | 21 | – | – | |
| MobiDBLite | 928 | 1071 | 144 | – | – | |
| PANTHER | 945 | 977 | 33 | 0 | – | |
| PANTHER | 945 | 977 | 33 | 0 | – | |
| PANTHER | 1002 | 1379 | 378 | 0 | – | |
| PANTHER | 1002 | 1379 | 378 | 0 | – | |
| Pfam | 1102 | 1349 | 248 | 2.40E-53 | ||
| MobiDBLite | 1354 | 1375 | 22 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of Lj2g3v1022350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1022350.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.