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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2720280 |
| Transcript ID | Lj3g3v2720280.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: extended synaptotagmin-2-like [Glycine max] gi|356505439|ref|XP_003521498.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 430 | 430 | 6.30E-280 | ||
| PANTHER | 1 | 430 | 430 | 6.30E-280 | – | |
| SignalP | 1 | 30 | 30 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 1 | 24 | 24 | – | – | |
| Phobius | 4 | 15 | 12 | – | – | |
| Phobius | 16 | 24 | 9 | – | – | |
| Phobius | 25 | 512 | 488 | – | – | |
| Pfam | 62 | 242 | 181 | 1.30E-16 | ||
| Gene3D | 235 | 382 | 148 | 1.10E-27 | ||
| ProSiteProfiles | 245 | 341 | 97 | 15.474 | ||
| SUPERFAMILY | 256 | 385 | 130 | 9.52E-28 | ||
| Pfam | 258 | 351 | 94 | 1.20E-21 | ||
| SMART | 259 | 356 | 98 | 9.70E-21 | ||
| CDD | 260 | 353 | 94 | 2.94E-28 | – | |
| PRINTS | 275 | 287 | 13 | 4.40E-05 | ||
| PRINTS | 300 | 313 | 14 | 4.40E-05 | ||
| PRINTS | 322 | 330 | 9 | 4.40E-05 | ||
| Coils | 385 | 405 | 21 | – | – | |
| TMHMM | 420 | 442 | 23 | – | – | |
| TMHMM | 449 | 471 | 23 | – | – | |
| MobiDBLite | 484 | 512 | 29 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of Lj3g3v2720280.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2720280.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.