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Lj4g3v3113460.1

Overview

Field Value
Gene ID Lj4g3v3113460
Transcript ID Lj4g3v3113460.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description elongation factor 1-gamma [Glycine max] gi|351722398|ref|NP_001235707.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11260
1 228 228 7.20E-139 –
PANTHER
PTHR11260:SF194
1 228 228 7.20E-139 –
ProSiteProfiles
PS50404
1 82 82 19.67
IPR004045
SUPERFAMILY
SSF52833
2 85 84 4.58E-16
IPR012336
Gene3D
G3DSA:3.40.30.10
3 92 90 2.40E-19
IPR012336
CDD
cd03044
3 77 75 2.65E-24 –
Pfam
PF02798
5 73 69 1.30E-15
IPR004045
SUPERFAMILY
SSF47616
80 210 131 7.66E-31
IPR010987
ProSiteProfiles
PS50405
87 215 129 23.485
IPR010987
CDD
cd03181
90 210 121 4.09E-53 –
Gene3D
G3DSA:1.20.1050.10
93 213 121 7.50E-37
IPR010987
Pfam
PF00043
132 197 66 3.20E-11
IPR004046
MobiDBLite
mobidb-lite
213 265 53 – –
Pfam
PF00647
257 285 29 4.40E-07
IPR001662
Gene3D
G3DSA:3.30.70.1010
258 288 31 7.80E-09
IPR001662
ProSiteProfiles
PS50040
258 291 34 20.957
IPR001662
SUPERFAMILY
SSF89942
259 284 26 4.97E-08
IPR001662
PANTHER
PTHR11260:SF194
273 291 19 7.20E-139 –
PANTHER
PTHR11260
273 291 19 7.20E-139 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003746
Molecular function Translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006414
Biological process Translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
Subterm of
Part of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj4g3v3113460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3113460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.